Information report for YGL138(t);OscpSRP54a
Gene Details
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Functional Descriptions
- The defective OscpSRP54a (LOC_Os11g05552) was responsible for the pale green leaf phenotype of the viable pale green leaf 14 (pgl14) mutant.
- Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice.
- OscpSRP54a and OscpSRP54b might play distinct roles in transporting different chloroplast proteins into thylakoids through cpSRP-mediated pathway.
- Both OscpSRP54a and OscpSRP54b were constitutively expressed mainly in shoots and leaves at the vegetative growth stage.
- Here, we isolated and characterized a thermosensitive yellow-green leaf mutant named TSYL1 (thermosensitive yellow leaf 1) from an ethylmethylsulfone (EMS)-mutagenized pool of rice.
- Furthermore, and chloroplast development-related genes was influenced in TSYL1 at different temperatures.
- The expression of TSYL1 was induced by high temperature.
- These results indicated that the TSYL1 gene plays a key role in chlorophyll biosynthesis and is affected by temperature at the transcriptional level.
- At the mature stage of the TSYL1 mutant, the plant height, tiller number, number of spikelets per panicle and 1000 seed weight were decreased significantly compared to those of wild-type plants, but the seed setting rate and panicle length were not.
Functional Keywords
- leaf , chloroplast , growth , development , vegetative , chloroplast-development , temperature , panicle , tiller , seed , seed-weight , plant-height , chlorophyll , tiller-number , panicle-length , spikelets-per-panicle
Literature and News
- YGL138(t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice . DOI: 10.1186/1939-8433-6-7 ; PMID: 24280537
- Chloroplast SRP54s are Essential for Chloroplast Development in Rice . DOI: 10.1186/s12284-020-00415-2 ; PMID: 32761436
- Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa) . DOI: 10.1016/j.jplph.2022.153782 ; PMID: 35963041
Gene Resources
- UniProt: C7J940
- EMBL: AP008217
- AlphaFoldDB: C7J940
- KEGG: dosa:Os11g0153600
- InterPro: IPR000897, IPR013822, IPR022941
- PANTHER: PTHR11564, PTHR11564:SF5
- SUPFAM: SSF47364, SSF52540
- Gene3D: 1.20.120.140, 3.40.50.300
- SWISS-MODEL: C7J940
Sequences
cDNA Sequence
- >LOC_Os11g05552.1
TGGGCCCACCTACAGTTGATTCTCTTATCTTCCTCCTCGCGTTCGCGTCTTCTCTTCTCTTCGCTCCGCTCGCTCATCGGCAATGGAGGCCACGGCGCTCACGCTCTCCTCCCGCCCCGCCGCCGCCAGCCGCTCGCCGGCGAAGGGAACCTTCGCCTCCCTCCACCCCCGCCGCCGCTTCTCCGCGCACGCTGTCCACCTCCGCGCGGCCCAGAGCGCCTCCCTGCGCGCCCCCTCCCCGGGGGCGAGGAGGAGACGGAGGAGGGGGAGCGGGCTGGTGGTGCGGGCGGAGATGTTCGGGCAGCTCACCACCGGCCTGGAGTCCGCCTGGAACAAGCTGCGTGGCGTCGATGTACTAACAAAGGAGAATATCGTTGAGCCAATGCGGGATATAAGAAGAGCACTTCTGGAAGCTGATGTTAGTTTGCCTGTAGTGAGAAGATTTGTTTCGTCTATAAGTGAAAAGGCTCTGGGTTCTGATCTTATAAGAGGAGTCCGACCGGAACAGCAATTGGTGAAGATTGTGCATGATGAACTTGTAAAACTGATGGGTGGAGAAGTATCAGATCTGGTATTTGCAAAAAGTGGCCCCACAGTAATCTTACTGGCAGGCCTGCAAGGTGTTGGGAAGACTACTGTTTGCGCAAAGCTTGCATTTTACCTGAAGAAATTGATACTTATGCCAGAGTTAGGTGACAGGGAAAGAGTTGTATGCTGGTCGCTGCAGATGTTTACAGGCCTGCAGCCATTGATCAACTCACTATACTTGGTGAACAGGTCGGTGTACCAGTTTACTCAGAAGGAACAGAAGCCAAACCTGCACAAATAACCAAGAATGCCGTGGAAGAGGCCAAAAGAAAGAATATTGATGCCATTGTAATGGATACTGCTGGAAGACTGCAGATTGACAAATCAATGATGGTTGAATTGAAAGAAGTGAAGAAGGCAGTTAATCCTACGGAAGTTCTGCTTGTTGTTGATGCTATGACTGGACAGGAAGCTGCAGGTATGCAACTGTTCCACTTGCTATTTAAGTCCCTCTTTTTGCTACTAAAGGCCAACACTATTTGTTCGTATAGCAGAAATGCAACGAACAACCAGAATTTTTTCAACGGTTCTCAAATTCTACTATATGACAAATTCTTACAGCGCGACATGTTCTATCTGCTATATTTATACGAGCTTAAGAAGTATTATTGTTTGATAGAGTTGCAACAGCCACTTACAATACTTCTCTGAGATGCAGCATTGGTCACCACCTTCAATATTGAGATTGGTATCACTGGTGCTATATTGACTAAACTGGATGGTGATTCGAGGGGTGGAGCAGCACTAAGTGTTAAAGAGGTCCTTATTTGCCAGAAAACTTTCCTACCATCATATCTACAAATGCTTCTGCCACTTTTATATTTTTGCTTTGAAGTTACTCTGCATCTATGTTGGTCAAAACTGCAAATTCCTATTGTCCACATGCTTCTTTCATCAATTGACAATTTACTGCAAATCTCCGCACTAGTCTTCTCACTTTTATGCTGTATTTATATAAAAAAAATCTAGTGTTTATCATCTGGCTACCTACTTGAATGTATATACGGTCAACATTAAATCGTTCGTAGTAAGCTGTGTTTGCATGCTTGCTGCTTTGCCCTTCAACGAATATTAATGCTTAACGGACCATGCAGGTGTCTGGAAAGCCCATCAAGTTTGTAGGGCGTGGAGAACGAATGGAGGACCTTGAGCTTTTTTATCCTGACCGTATGGCACAACGTGTTTTGGGAATGGGCGATGTACTTTCATTTGTTGAAAAAGCACAAGAAGTCATGCGTCAAGAAGATGCTGTAGAATTACAGAAGAAGATCATGAGTGCAAAATTCGACTTCAATGACTTCCTAAAGCAATCACAGAATGTTGCAAAAATGGGTTCCATGAGCCGTGTAGTTGGAATGATTCCAGGCATGAACAAGGTTACTCCTGCACAAATTCGAGAAGCCGAGAAAAGACTTGCATTTGTGGAGTCTATGATCAATGCAATGACTGCCGAGGAAAGGGAAAAGCCAGAATTACTGGCTGAATCACGTGACAGGAGGATAAGAGTGGCTGAAGAGTCCGGAAAGAGTGAACAAGAGGTGAGCCAGTTGGTTGCCCAGCTTTTCCAAATGCGTGCTCAGATGCAGAAGCTGATGGGTGTGATGACCGGACAAGAAGCACTTCCAGGCATGGGGAATCTCATGGAATCTCTTAACGCCGATGAGAAGGCACCTCCTGGCACTGCACGGCGGAAGAGGAGGCACAGCAAGACGAGGCAGAGGGAGCTGGATGCAGTCCCTAGTTCTTGAGCTGGTGAGCGTTGTAGTTCAGAGTTACTGCTCTTTTGCTTCAGAGACCCGGATCTGAGAAAAAAGAGATGAAAAAAAAATGTTGTCTTGCTACCTTTTTTAGTTTGTACGTAGGAGATCTGCAGGAAGTTCATAGGAAACAGTAATTTCCTACCAAATTGTAATGTTACTTAGCCAGTCCTACTCAGCAATGCAATCGGTTCACTCGAATGCTCGGACTTTTTACATTACATTAATCATGAATGTATATGTTGTAGAAGGATCAGGTTCATTTCAAAACTTC
CDS Sequence
- >LOC_Os11g05552.1
ATGGAGGCCACGGCGCTCACGCTCTCCTCCCGCCCCGCCGCCGCCAGCCGCTCGCCGGCGAAGGGAACCTTCGCCTCCCTCCACCCCCGCCGCCGCTTCTCCGCGCACGCTGTCCACCTCCGCGCGGCCCAGAGCGCCTCCCTGCGCGCCCCCTCCCCGGGGGCGAGGAGGAGACGGAGGAGGGGGAGCGGGCTGGTGGTGCGGGCGGAGATGTTCGGGCAGCTCACCACCGGCCTGGAGTCCGCCTGGAACAAGCTGCGTGGCGTCGATGTACTAACAAAGGAGAATATCGTTGAGCCAATGCGGGATATAAGAAGAGCACTTCTGGAAGCTGATGTTAGTTTGCCTGTAGTGAGAAGATTTGTTTCGTCTATAAGTGAAAAGGCTCTGGGTTCTGATCTTATAAGAGGAGTCCGACCGGAACAGCAATTGGTGAAGATTGTGCATGATGAACTTGTAAAACTGATGGGTGGAGAAGTATCAGATCTGGTATTTGCAAAAAGTGGCCCCACAGTAATCTTACTGGCAGGCCTGCAAGGTGTTGGGAAGACTACTGTTTGCGCAAAGCTTGCATTTTACCTGAAGAAATTGATACTTATGCCAGAGTTAGGTGACAGGGAAAGAGTTGTATGCTGGTCGCTGCAGATGTTTACAGGCCTGCAGCCATTGATCAACTCACTATACTTGGTGAACAGGTCGGTGTACCAGTTTACTCAGAAGGAACAGAAGCCAAACCTGCACAAATAA
Protein Sequence
- >LOC_Os11g05552.1
MEATALTLSSRPAAASRSPAKGTFASLHPRRRFSAHAVHLRAAQSASLRAPSPGARRRRRRGSGLVVRAEMFGQLTTGLESAWNKLRGVDVLTKENIVEPMRDIRRALLEADVSLPVVRRFVSSISEKALGSDLIRGVRPEQQLVKIVHDELVKLMGGEVSDLVFAKSGPTVILLAGLQGVGKTTVCAKLAFYLKKLILMPELGDRERVVCWSLQMFTGLQPLINSLYLVNRSVYQFTQKEQKPNLHK*