Information report for OsPIN1c
Gene Details
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Functional Descriptions
- These data suggest that OsPIN1a and OsPIN1b are involved in root, shoot and inflorescence development in rice, whereas OsPIN1c and OsPIN1d mainly function in panicle formation.
- Cadmium rapidly downregulated the expression of the auxin efflux transporter genes OsPIN1b, OsPIN1c and OsPIN9 in the stele and LPR.
- In addition to significantly decreased plant height and tiller number, panicle development was severely disrupted in double mutant lines of OsPIN1c and OsPIN1d.
- Additionally, several critical regulators of reproductive development, such as OsPID, LAX1, OsMADS1, and OsSPL14/IPA1, were differentially expressed in OsPIN1c-1 ospin1d-1, supporting the hypothesis that OsPIN1c and OsPIN1d are involved in regulating panicle development.
- Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.
- Results showed that OsPIN1c and OsPIN1d were mainly expressed in young panicles and exhibited a redundant function.
Functional Keywords
- shoot , panicle , development , inflorescence , auxin , transporter , cadmium , tiller , reproductive , height , plant-height , reproductive-development , tiller-number , young-panicles
Literature and News
- Functional Divergence of PIN1 Paralogous Genes in Rice . DOI: 10.1093/pcp/pcz159 ; PMID: 31410483
- Cadmium Inhibits Lateral Root Emergence in Rice by Disrupting OsPIN-Mediated Auxin Distribution and the Protective Effect of OsHMA3 . DOI: 10.1093/pcp/pcaa150 ; PMID: 33300991
- The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants . DOI: 10.1186/s12284-020-00446-9 ; PMID: 33409665
- Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development . DOI: 10.1093/pcp/pcab172 ; PMID: 34888695
Gene Resources
- UniProt: P0C0X5
- EMBL: AK103181, AP008217, AP014967
- AlphaFoldDB: P0C0X5
- EnsemblPlants: Os11t0137000-01
- Gramene: Os11t0137000-01
- KEGG: dosa:Os11g0137000
- Orthologous matrix: YSMVNNG
- InterPro: IPR004776, IPR014024, IPR051107
- PANTHER: PTHR31752, PTHR31752:SF66
- OrthoDB: P0C0X5
- SWISS-MODEL: P0C0X5
- eggNOG: ENOG502QS61
Sequences
cDNA Sequence
- >LOC_Os11g04190.1
CTCGCTGCTGCTGCTTTTGCCCAAAGCTGCACAACCTGCATTGCCTCTCGCCTGACCCTCTTGCCTCATCTGTGTCTCCCCCCTTCTCTTTTTCTTCAACCCCTCTTTATGCTCGTTTCTCCATTGCAGCTCACCTCCATCTCCTATTCTCCTCCTCCTTGTTGAAGGAGTTCGTGTGCCTCTACCAAGAACAAGAAGAAGCCTCTTGCATCGGCAGCCATGATCACGGTGGTGGACCTGTACCACGTCCTGACGGCGGTGGTGCCGCTGTACGTGGCGATGACGCTGGCGTACGCCTCCGTCCGGTGGTGGCGCATCTTCTCCCCGGACCAGTGCTCCGGCATCAACCGCTTCGTCGCGCTCTTCGCCGTCCCGCTCCTCTCCTTCCACTTCATCTCCACCAACAACCCCTTCGCCATGAACCTCCGCTTCCTCGCCGCCGACACGCTCCAGAAGCTCATCGTCCTCGCCCTCCTCGCCCTCTGGTGCCGCCTCTCCGCGCGCGGGTCACTCGACTGGCTCATCACCCTCTTCTCCCTCTCCACCCTCCCCAACACCCTCGTCATGGGCATCCCGCTGCTCAAGGGGATGTACGCCGCCGCCGCCGACGTCGACTCCGGCAGCCTCATGGTGCAGATCGTCGTGCTCCAGTGCATCATCTGGTACACGCTCATGCTGTTCCTCTTCGAGTACCGCGGCGCGCGGCTTCTTGTCATGGAGCAGTTCCCGGACACCGCCGCCTCCATCGTCTCCTTCCGGGTGGATTCCGACGTCGTCTCGCTCGCCGGCGGCGGTGGTGGAGCCGCGGAGCTGCAGGCGGAGGCGGAGGTCGGGGACGATGGCAGGATGCGGGTCACCGTGCGCAAGTCGACGAGCTCGCGCTCCGAGGCGGCGTGCTCGCACGGGACGCAGTCACACTCGCAGTCCATGCAGCCGCGCGTCTCCAACCTCTCCGGCGTCGAGATTTACTCGCTGCAGTCGTCGCGGAACCCGACGCCGCGTGGCTCCAGCTTCAACCACGCCGAGTTCTTCAACATCGTCGGCAACGGCAAGCAGGGCGACGAGGAGAAGGGCGCCGCCGGTGGCGGGGGCCACTCGCCGCAGCCGGTGGTGGGGAAGAGGAAGGACCTGCACATGTTCGTGTGGAGCTCAAGCGCCTCGCCGGTGTCGGAGCGCGCCGCCGCAGCAGCAGCTGGCGCGGTGCACGTCTTCGGCGGTGGTGGCGCCGACCACGGCGACGCCAAAGGAGCTCAGGCCTATGATGAGTACAGTTTCGGGAACAAGAACGAGAAGGACGGGCCGACGCTGTCCAAGCTGGGGTCCAACTCGACGGCGCAGCTCCGGCCAAAGGACGACGGCGAGGGGATGGCGGCGGCGATGCCGCCGGCGAGCGTGATGACGAGGCTCATCCTGATCATGGTTTGGAGGAAGCTGATCAGGAACCCCAACACTTACTCCAGCCTCCTTGGTGTCATCTGGTCCCTCGTCTCCTACAGGTGGGGGATTGAGATGCCAGCCATCATCGCCCGGTCGATTTCGATCCTGTCAGATGCAGGGCTTGGAATGGCCATGTTCAGCCTAGGATTGTTCATGGCATTGCAGCCACGGATCATTGCCTGTGGGAACTCCCTTGCTTCGTATGCCATGGCCGTCAGGTTCCTCGTGGGTCCGGCCGTCATGGCTGCCGCCTCCATCGCCGTCGGACTTCGCGGGGTGCTTCTGCACATTGCCATTGTTCAGGCCGCTCTTCCTCAAGGAATCGTGCCCTTTGTGTTTGCCAAGGAGTACAATGTTCATCCTAACATTCTGAGCACAGCCGTGATATTCGGGATGCTGATTGCTCTCCCCATCACATTGGTCTACTACATACTGCTGGGGCTCTGAAGAGCTCTCCAAGTCTCAACTCAACTGTGCAAGAACTTGATGTTACTGACAGTTTGATTAGGATTTATGGTTCTGTTTTAGTTGCTCAGATTTTGTTTGGATGATAGGTCAGCTTAGTGATGCTAGTTAGACAATTATCCGAGGACTTTTGGGTTCAAGTGACGGCCAGCCACGGTTTCTGATTGAAGATTAGGAACATAGACATCACATTAGTGACAACAGGCATCTAATTTGTAAGACATTGAGAAGGTCTGTTTCAAATTACTGACAATGTAGTAAGACATTGAACAGTGCTTATAAGCTTATTTAGCATTCCAATAACTGATGGTAATGCACTTAAAGGAGCTACTCTGAAGGACTTTTTTAATCTCTTGAGAGATTAGCTCCGGATTTTTTC
CDS Sequence
- >LOC_Os11g04190.1
ATGATCACGGTGGTGGACCTGTACCACGTCCTGACGGCGGTGGTGCCGCTGTACGTGGCGATGACGCTGGCGTACGCCTCCGTCCGGTGGTGGCGCATCTTCTCCCCGGACCAGTGCTCCGGCATCAACCGCTTCGTCGCGCTCTTCGCCGTCCCGCTCCTCTCCTTCCACTTCATCTCCACCAACAACCCCTTCGCCATGAACCTCCGCTTCCTCGCCGCCGACACGCTCCAGAAGCTCATCGTCCTCGCCCTCCTCGCCCTCTGGTGCCGCCTCTCCGCGCGCGGGTCACTCGACTGGCTCATCACCCTCTTCTCCCTCTCCACCCTCCCCAACACCCTCGTCATGGGCATCCCGCTGCTCAAGGGGATGTACGCCGCCGCCGCCGACGTCGACTCCGGCAGCCTCATGGTGCAGATCGTCGTGCTCCAGTGCATCATCTGGTACACGCTCATGCTGTTCCTCTTCGAGTACCGCGGCGCGCGGCTTCTTGTCATGGAGCAGTTCCCGGACACCGCCGCCTCCATCGTCTCCTTCCGGGTGGATTCCGACGTCGTCTCGCTCGCCGGCGGCGGTGGTGGAGCCGCGGAGCTGCAGGCGGAGGCGGAGGTCGGGGACGATGGCAGGATGCGGGTCACCGTGCGCAAGTCGACGAGCTCGCGCTCCGAGGCGGCGTGCTCGCACGGGACGCAGTCACACTCGCAGTCCATGCAGCCGCGCGTCTCCAACCTCTCCGGCGTCGAGATTTACTCGCTGCAGTCGTCGCGGAACCCGACGCCGCGTGGCTCCAGCTTCAACCACGCCGAGTTCTTCAACATCGTCGGCAACGGCAAGCAGGGCGACGAGGAGAAGGGCGCCGCCGGTGGCGGGGGCCACTCGCCGCAGCCGGTGGTGGGGAAGAGGAAGGACCTGCACATGTTCGTGTGGAGCTCAAGCGCCTCGCCGGTGTCGGAGCGCGCCGCCGCAGCAGCAGCTGGCGCGGTGCACGTCTTCGGCGGTGGTGGCGCCGACCACGGCGACGCCAAAGGAGCTCAGGCCTATGATGAGTACAGTTTCGGGAACAAGAACGAGAAGGACGGGCCGACGCTGTCCAAGCTGGGGTCCAACTCGACGGCGCAGCTCCGGCCAAAGGACGACGGCGAGGGGATGGCGGCGGCGATGCCGCCGGCGAGCGTGATGACGAGGCTCATCCTGATCATGGTTTGGAGGAAGCTGATCAGGAACCCCAACACTTACTCCAGCCTCCTTGGTGTCATCTGGTCCCTCGTCTCCTACAGGTGGGGGATTGAGATGCCAGCCATCATCGCCCGGTCGATTTCGATCCTGTCAGATGCAGGGCTTGGAATGGCCATGTTCAGCCTAGGATTGTTCATGGCATTGCAGCCACGGATCATTGCCTGTGGGAACTCCCTTGCTTCGTATGCCATGGCCGTCAGGTTCCTCGTGGGTCCGGCCGTCATGGCTGCCGCCTCCATCGCCGTCGGACTTCGCGGGGTGCTTCTGCACATTGCCATTGTTCAGGCCGCTCTTCCTCAAGGAATCGTGCCCTTTGTGTTTGCCAAGGAGTACAATGTTCATCCTAACATTCTGAGCACAGCCGTGATATTCGGGATGCTGATTGCTCTCCCCATCACATTGGTCTACTACATACTGCTGGGGCTCTGA
Protein Sequence
- >LOC_Os11g04190.1
MITVVDLYHVLTAVVPLYVAMTLAYASVRWWRIFSPDQCSGINRFVALFAVPLLSFHFISTNNPFAMNLRFLAADTLQKLIVLALLALWCRLSARGSLDWLITLFSLSTLPNTLVMGIPLLKGMYAAAADVDSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLLVMEQFPDTAASIVSFRVDSDVVSLAGGGGGAAELQAEAEVGDDGRMRVTVRKSTSSRSEAACSHGTQSHSQSMQPRVSNLSGVEIYSLQSSRNPTPRGSSFNHAEFFNIVGNGKQGDEEKGAAGGGGHSPQPVVGKRKDLHMFVWSSSASPVSERAAAAAAGAVHVFGGGGADHGDAKGAQAYDEYSFGNKNEKDGPTLSKLGSNSTAQLRPKDDGEGMAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPITLVYYILLGL*