Information report for D53
Gene Details
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Functional Descriptions
- D14-SCF(D3)-dependent degradation of D53 regulates strigolactone signalling.
- We demonstrate that, in a D14- and D3-dependent manner, SLs induce D53 degradation by the proteasome and abrogate its activity in promoting axillary bud outgrowth.
- Here we report the characterization of a dominant SL-insensitive rice (Oryza sativa) mutant dwarf 53 (D53) and the cloning of D53, which encodes a substrate of the SCF(D3) ubiquitination complex and functions as a repressor of SL signalling.
- Here we show that DWARF 53 (D53) acts as a repressor of SL signalling and that SLs induce its degradation.
- The D53 gene product shares predicted features with the class I Clp ATPase proteins and can form a complex with the alpha/beta hydrolase protein DWARF 14 (D14) and the F-box protein DWARF 3 (D3), two previously identified signalling components potentially responsible for SL perception.
- We find that the rice (Oryza sativa) D53 mutant, which produces an exaggerated number of tillers compared to wild-type plants, is caused by a gain-of-function mutation and is insensitive to exogenous SL treatment.
- Treatments with GR24, a synthetic SL analogue, cause D53 degradation via the proteasome in a manner that requires D14 and the SCF(D3) ubiquitin ligase, whereas the dominant form of D53 is resistant to SL-mediated degradation.
- Sucrose promotes D53 accumulation and tillering in rice.
- Overexpression of D3 antagonizes sucrose inhibition of D53 degradation and enables the SL inhibition of tillering under high sucrose.
- Sucrose prevents SL-induced degradation of D14, the SL receptor involved in D53 degradation.
Literature and News
- DWARF 53 acts as a repressor of strigolactone signalling in rice . DOI: 10.1038/nature12870 ; PMID: 24336200
- D14-SCFD3-dependent degradation of D53 regulates strigolactone signalling . DOI: 10.1038/nature12878 ; PMID: 24336215
- A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex . DOI: 10.1126/sciadv.1601217 ; PMID: 28630893
- Characterization of dwarf and narrow leaf (dnl-4) mutant in rice . DOI: 10.1080/15592324.2020.1849490 ; PMID: 33300429
- Sucrose promotes D53 accumulation and tillering in rice . DOI: 10.1111/nph.17834 ; PMID: 34716593
- Strigolactone and gibberellin signaling coordinately regulate metabolic adaptations to changes in nitrogen availability in rice . DOI: 10.1016/j.molp.2023.01.009 ; PMID: 36683328
Gene Resources
- UniProt: Q2RBP2
- EMBL: AP008217, AP014967, CM000148
- AlphaFoldDB: Q2RBP2
- EnsemblPlants: Os11t0104300-01
- Gramene: Os11t0104300-01
- KEGG: dosa:Os11g0104300
- InterPro: IPR004176, IPR027417, IPR036628
- PANTHER: PTHR43572, PTHR43572:SF38
- SUPFAM: SSF52540
- PROSITE: PS51903
- Gene3D: 1.10.1780.10, 3.40.50.300
- OrthoDB: Q2RBP2
- SWISS-MODEL: Q2RBP2
- Conserved Domain Database: cd19499
Sequences
cDNA Sequence
- >LOC_Os11g01330.1
TCAATTCCTTCCTTCTTTCCATTTATTTTCTTTTATTTTCCCAAGAGAAAGAGGGTGAGGAGGCTCCATCCGCGAAAAGCTACTCGACCAACCCACCTGCCACCCTGCACTTTCCGTTATTCTCATTTCAACCCTCGCATTTTTTACACTCCGCTCCCCATGCCCTGTGAAAACTAATTACAATCCAGTCCTTCACCGGTCAGCGATGCCCACTCCGGTGGCCGCCGCGAGGCAGTGCCTCTCGCCGGCCGCCGTCCCCGCCCTCGACGCCGCCGTCGCCTCCTCTCGCCGCCGCGCCCACGCCCAGACTACCTCCCTCCACCTCATCTCCTCCCTCCTCGCCCCGCCCGCACCTCCCCTCCTCCGCGACGCCCTCGCCCGCGCCCGCAGCGCCGCCTACTCACCCCGCGTCCAGCTCAAGGCCCTCGACCTCTGCTTCGCCGTCTCCCTCGACAGGCTCCCCTCCGTCTCCGCATCCTCCTCCTCCTCTGGCGCCGCCGACGAGCCCCCCGTCTCCAACTCCCTCATGGCCGCCATCAAGCGCTCCCAGGCCAACCAGCGCCGCAACCCGGACACCTTCCACTTCTATCACCAGGCCGCCACCGCCCAGACTCCCGCCGCCGTCAAGGTCGAGCTCTCCCACCTCGTCCTCGCCATCCTCGATGACCCCGTCGTCAGCCGCGTCTTCGCCGAGGCCGGATTCCGCAGCGGGGACATCAAGCTCGCCATCCTCCGCCCGGCTCCGCCCATGCCGCTCCTCGGCCGCCTCCCCACGCGCACCCGTCCGCCGCCTCTCTTCCTCTGCAGCTTCGCCGCCGCGGACGACGCCGACGTCCCTTCGCCGGCCGGGAATCTCGCCGGCGCGGGGGAGGAGAACTGCCGCCGCATCGCGGAGATCCTCTCCCGCGGCCGCAACCCCATGCTCGTCGGCGTCGGGGCCGCCTCCGCCGCCGACGACTTCGCGGCCGCCTCCCCGTATCGTATCATCCATGTCGACCCCAACACCATCGACCGCTCAGACCTCGGCGTGGCGGCGGCAATGGCCAGTGCCACCTCCGGCCTCATCATAAGCATCGGAGACCTCAAGCAGCTGGTCCCCGATGAGGACGCGGAGGCGCAGGAGAAGGGGCGGCGGGTGGTGGCGGAGGTGACGCGAGTGCTGGAGACGCACAGCAAGGTCGGCCGCGTCTGGGTGATGGGGTGGTCGGCAACGTACGAGACCTACCTCGCCTTCCTCTCCAAATTCCCCTTGGTCGACAAGGATTGGGACCTCCAGCTGCTGCCAATCACCGCGGTGCATGCCGCCGCCACCGCTGGCCCTGCTGCTGCTGCTGCTGGACTCATGCCTCCGGCAACCACTGTTGCTGCCTTCTCCAAGCCAGCTGCAAGCTTGATGGACTCCTTTGTTCCTTTTGGAGGCTTTCTCTGTGATAACTACGAAGAGAACAGCCTGACAGCAAATTCATGCCCACAGGCCCTGCGGTGCCAGCAGTGCAATGATAAATATGAGCAAGAAGTTGCAACTATCATTAGCGCAAGTGGCATTACAGCTGAAGACCATCACCAGGGAGGTCTTCCTTCCCTGCTGCAGAATGGCAGCATGATGGGTCCTAACAATGGATTTGATCCAGTCAAGGCTAGAGATGATCGGATGGTATTGAATTCAAAAATATTGAATCTACGGAAGAAGTGGAATGAGTACTGCCTGCGGCTCCACCAAGACCACCAGAGGATCAACAGAGATCCTTACAAACCATTTCCGCGCTATATTGGTGTTCCCACTGACAAAGAAAGATCAGCAAATTCAAGCAAAGGTTCTGAGTCAGTTGGGGTTCAAAAGGATGTTATTAAACCTTGTGCGGTGTCTGCTGTACATTCCAGCTCAACTGCAAGGCCTATTTCATCTCCATCTGTCACCAACAAAAGAAATGAAGATCTTGTATTGAACCTTCAAGCCAGGCATTCCAAGAGTGATGAAAACCTTCAAGAAAGGGGCATGCAATCCCAACATGGCACCCTGTCGAATGTTGACAATCCGGATGATCATGTCTCACCATCATCTGCTGCACCTGTGGAAACTGACTTGGTTTTGGGCACCCCTCGAGAGTGTAGTTCGAAAGGTTCAAGTTCCACCTGCAGTAAACGTGTAGAGGATTCAGAGAGGTCTGTCCATCTGGTACCCAAGAAGGTGGATGATTTAAATCTGAAGCATCCACAACTCTCTGTTCAACCTAATTCCTGCTCCTGGAGTTCCATAAATGTTGGGAAAACATCACACAGTACACTACACTCAGTAGCTTCAGGAGGCTTCTCTGCCTTTGGCCAATGGCAGAAACGGTCACCTCTTGCTGCACAAAATTCTGATCTGAGCAATTACAAGCTACTTGTTGAACGCCTGTTCAAGGTAGTTGGAAGGCAGGAGGAAGCCTTGAGTGCTATTTGTGAATCCATTGTGCGGTGCCGGTCAACAGAGTCGCGCCGTGGTCCTAACAGGAATGACATCTGGTTGTGTTTTCATGGTTCTGACAGCATGGCCAAGAAGAGAATCGCCGTGGCACTTGCAGAGCTCATGCACGGCAGCAAAGATAACTTGATTTATCTGGACCTAAACCTTCAGGATTGGGATGACTCCAGTTTCAGAGGGAAGACTGGCATAGACTGCATTGTGGAGCAGTTGAGCAAGAAACGGCAATCTGTTCTCTTCCTTGACAACATTGATAGAGCTGACTGCCTTGTTCAGGATAGTCTATCTGATGCTATTAAGTCTGGCAGGTTCCAAGACATGCGAGGCAAGGTGGTTGACATTAATGACTCGATTGTGGTTTTGTCAAGAAGCATGATACAGGGCAGCAAAAATGGGTTGGAAGAGGGCCTTTCATTTTCTGAAGAAAAGATTCTGGCAACTCGCGGACATCGACTGAAGATCCTGGTTGAACCGGGTAGGGCAATCACCAGTGGATGCCCTAGTGGTAAGGTGGTAGTTTCCCCAAGGCATTTTCTCACCAAAATTCAAGCATCTTTGTGCTCTGGTTCCATCAGCAAGAGAAAGCTCAGTATTTCTGATGATCAGGAAAAGCTACAAGAGTCGCCAAGCAGTTCAAAGCGACTGCACAGAACATCGAGTGTACCATTCGACCTGAACCTCCCTGTTGATGAAGATGAACCCCTTGATGCTGATGACGACAGTAGTAGCCATGAAAATTCATATGGCAACACAGAAAAATCCATTGATGCCCTTTTGCATTCGGTTGATGGATCAATCAACTTTAAGCCGTTTGACTTTGATAAACTTGCTGATGACATGCTGCAGGAGTTCAGCAACATACTCAGGAAAAATCTGGGTTCTGAGTGCATGTTGGAGATTGATGTTGGTGCAATGGAACAAATACTTGCCGCAGCATGGAAATCAGAGGAGGATAGGAAACCTGTGCCGACCTGGCTGGAGCAGGTTTTTGCCAGGAGCCTTGACGAGCTGAAGCTCAAGCGTAAGCATGTGAGTAGCTCTACCCTTAGACTAGTGGCCTGTGAGGACACAGTACCAGCAGTGAAAGGAGACGGTTTAGGAGTTTTGCTCCCGCCAAGAATAATTCTAGATTGTTGATGATATTATCTGTATAGGGATCGCTGTAATTATCTGTAGTCCACAATAGTATAGCATTATTTGTTGGCTAAATAAGCTCTAGTCTAGCTGATGCATTGCCTTGGGTTCTCTAATTAGCTACTGCCATTACTGTCATATCATTTTCTACCTCAGGGCCTTTTCCAGATATATGGGCATCCGAATGTATATTGGTTGTAACTACTATGGATTGTCAATATTTGATTGTTCTATATATACATGGACACATGGTGCTCAGTCAGTGTACTTGTGTGGTTCATGCTGAAATCCACAACTGCAAGGTTGCTTACATATTTTGTTGGCCAACTTGTATATGTGCTCTCATCTCGTCTTAATTTGTGGCAGGAGTTGATTGCTACTCCAATAACTACGTTTTTATTATTCCTGAATGATGCTATCA
CDS Sequence
- >LOC_Os11g01330.1
ATGCCCACTCCGGTGGCCGCCGCGAGGCAGTGCCTCTCGCCGGCCGCCGTCCCCGCCCTCGACGCCGCCGTCGCCTCCTCTCGCCGCCGCGCCCACGCCCAGACTACCTCCCTCCACCTCATCTCCTCCCTCCTCGCCCCGCCCGCACCTCCCCTCCTCCGCGACGCCCTCGCCCGCGCCCGCAGCGCCGCCTACTCACCCCGCGTCCAGCTCAAGGCCCTCGACCTCTGCTTCGCCGTCTCCCTCGACAGGCTCCCCTCCGTCTCCGCATCCTCCTCCTCCTCTGGCGCCGCCGACGAGCCCCCCGTCTCCAACTCCCTCATGGCCGCCATCAAGCGCTCCCAGGCCAACCAGCGCCGCAACCCGGACACCTTCCACTTCTATCACCAGGCCGCCACCGCCCAGACTCCCGCCGCCGTCAAGGTCGAGCTCTCCCACCTCGTCCTCGCCATCCTCGATGACCCCGTCGTCAGCCGCGTCTTCGCCGAGGCCGGATTCCGCAGCGGGGACATCAAGCTCGCCATCCTCCGCCCGGCTCCGCCCATGCCGCTCCTCGGCCGCCTCCCCACGCGCACCCGTCCGCCGCCTCTCTTCCTCTGCAGCTTCGCCGCCGCGGACGACGCCGACGTCCCTTCGCCGGCCGGGAATCTCGCCGGCGCGGGGGAGGAGAACTGCCGCCGCATCGCGGAGATCCTCTCCCGCGGCCGCAACCCCATGCTCGTCGGCGTCGGGGCCGCCTCCGCCGCCGACGACTTCGCGGCCGCCTCCCCGTATCGTATCATCCATGTCGACCCCAACACCATCGACCGCTCAGACCTCGGCGTGGCGGCGGCAATGGCCAGTGCCACCTCCGGCCTCATCATAAGCATCGGAGACCTCAAGCAGCTGGTCCCCGATGAGGACGCGGAGGCGCAGGAGAAGGGGCGGCGGGTGGTGGCGGAGGTGACGCGAGTGCTGGAGACGCACAGCAAGGTCGGCCGCGTCTGGGTGATGGGGTGGTCGGCAACGTACGAGACCTACCTCGCCTTCCTCTCCAAATTCCCCTTGGTCGACAAGGATTGGGACCTCCAGCTGCTGCCAATCACCGCGGTGCATGCCGCCGCCACCGCTGGCCCTGCTGCTGCTGCTGCTGGACTCATGCCTCCGGCAACCACTGTTGCTGCCTTCTCCAAGCCAGCTGCAAGCTTGATGGACTCCTTTGTTCCTTTTGGAGGCTTTCTCTGTGATAACTACGAAGAGAACAGCCTGACAGCAAATTCATGCCCACAGGCCCTGCGGTGCCAGCAGTGCAATGATAAATATGAGCAAGAAGTTGCAACTATCATTAGCGCAAGTGGCATTACAGCTGAAGACCATCACCAGGGAGGTCTTCCTTCCCTGCTGCAGAATGGCAGCATGATGGGTCCTAACAATGGATTTGATCCAGTCAAGGCTAGAGATGATCGGATGGTATTGAATTCAAAAATATTGAATCTACGGAAGAAGTGGAATGAGTACTGCCTGCGGCTCCACCAAGACCACCAGAGGATCAACAGAGATCCTTACAAACCATTTCCGCGCTATATTGGTGTTCCCACTGACAAAGAAAGATCAGCAAATTCAAGCAAAGGTTCTGAGTCAGTTGGGGTTCAAAAGGATGTTATTAAACCTTGTGCGGTGTCTGCTGTACATTCCAGCTCAACTGCAAGGCCTATTTCATCTCCATCTGTCACCAACAAAAGAAATGAAGATCTTGTATTGAACCTTCAAGCCAGGCATTCCAAGAGTGATGAAAACCTTCAAGAAAGGGGCATGCAATCCCAACATGGCACCCTGTCGAATGTTGACAATCCGGATGATCATGTCTCACCATCATCTGCTGCACCTGTGGAAACTGACTTGGTTTTGGGCACCCCTCGAGAGTGTAGTTCGAAAGGTTCAAGTTCCACCTGCAGTAAACGTGTAGAGGATTCAGAGAGGTCTGTCCATCTGGTACCCAAGAAGGTGGATGATTTAAATCTGAAGCATCCACAACTCTCTGTTCAACCTAATTCCTGCTCCTGGAGTTCCATAAATGTTGGGAAAACATCACACAGTACACTACACTCAGTAGCTTCAGGAGGCTTCTCTGCCTTTGGCCAATGGCAGAAACGGTCACCTCTTGCTGCACAAAATTCTGATCTGAGCAATTACAAGCTACTTGTTGAACGCCTGTTCAAGGTAGTTGGAAGGCAGGAGGAAGCCTTGAGTGCTATTTGTGAATCCATTGTGCGGTGCCGGTCAACAGAGTCGCGCCGTGGTCCTAACAGGAATGACATCTGGTTGTGTTTTCATGGTTCTGACAGCATGGCCAAGAAGAGAATCGCCGTGGCACTTGCAGAGCTCATGCACGGCAGCAAAGATAACTTGATTTATCTGGACCTAAACCTTCAGGATTGGGATGACTCCAGTTTCAGAGGGAAGACTGGCATAGACTGCATTGTGGAGCAGTTGAGCAAGAAACGGCAATCTGTTCTCTTCCTTGACAACATTGATAGAGCTGACTGCCTTGTTCAGGATAGTCTATCTGATGCTATTAAGTCTGGCAGGTTCCAAGACATGCGAGGCAAGGTGGTTGACATTAATGACTCGATTGTGGTTTTGTCAAGAAGCATGATACAGGGCAGCAAAAATGGGTTGGAAGAGGGCCTTTCATTTTCTGAAGAAAAGATTCTGGCAACTCGCGGACATCGACTGAAGATCCTGGTTGAACCGGGTAGGGCAATCACCAGTGGATGCCCTAGTGGTAAGGTGGTAGTTTCCCCAAGGCATTTTCTCACCAAAATTCAAGCATCTTTGTGCTCTGGTTCCATCAGCAAGAGAAAGCTCAGTATTTCTGATGATCAGGAAAAGCTACAAGAGTCGCCAAGCAGTTCAAAGCGACTGCACAGAACATCGAGTGTACCATTCGACCTGAACCTCCCTGTTGATGAAGATGAACCCCTTGATGCTGATGACGACAGTAGTAGCCATGAAAATTCATATGGCAACACAGAAAAATCCATTGATGCCCTTTTGCATTCGGTTGATGGATCAATCAACTTTAAGCCGTTTGACTTTGATAAACTTGCTGATGACATGCTGCAGGAGTTCAGCAACATACTCAGGAAAAATCTGGGTTCTGAGTGCATGTTGGAGATTGATGTTGGTGCAATGGAACAAATACTTGCCGCAGCATGGAAATCAGAGGAGGATAGGAAACCTGTGCCGACCTGGCTGGAGCAGGTTTTTGCCAGGAGCCTTGACGAGCTGAAGCTCAAGCGTAAGCATGTGAGTAGCTCTACCCTTAGACTAGTGGCCTGTGAGGACACAGTACCAGCAGTGAAAGGAGACGGTTTAGGAGTTTTGCTCCCGCCAAGAATAATTCTAGATTGTTGA
Protein Sequence
- >LOC_Os11g01330.1
MPTPVAAARQCLSPAAVPALDAAVASSRRRAHAQTTSLHLISSLLAPPAPPLLRDALARARSAAYSPRVQLKALDLCFAVSLDRLPSVSASSSSSGAADEPPVSNSLMAAIKRSQANQRRNPDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPAPPMPLLGRLPTRTRPPPLFLCSFAAADDADVPSPAGNLAGAGEENCRRIAEILSRGRNPMLVGVGAASAADDFAAASPYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDEDAEAQEKGRRVVAEVTRVLETHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPITAVHAAATAGPAAAAAGLMPPATTVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSCPQALRCQQCNDKYEQEVATIISASGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKARDDRMVLNSKILNLRKKWNEYCLRLHQDHQRINRDPYKPFPRYIGVPTDKERSANSSKGSESVGVQKDVIKPCAVSAVHSSSTARPISSPSVTNKRNEDLVLNLQARHSKSDENLQERGMQSQHGTLSNVDNPDDHVSPSSAAPVETDLVLGTPRECSSKGSSSTCSKRVEDSERSVHLVPKKVDDLNLKHPQLSVQPNSCSWSSINVGKTSHSTLHSVASGGFSAFGQWQKRSPLAAQNSDLSNYKLLVERLFKVVGRQEEALSAICESIVRCRSTESRRGPNRNDIWLCFHGSDSMAKKRIAVALAELMHGSKDNLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRQSVLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIQGSKNGLEEGLSFSEEKILATRGHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKLSISDDQEKLQESPSSSKRLHRTSSVPFDLNLPVDEDEPLDADDDSSSHENSYGNTEKSIDALLHSVDGSINFKPFDFDKLADDMLQEFSNILRKNLGSECMLEIDVGAMEQILAAAWKSEEDRKPVPTWLEQVFARSLDELKLKRKHVSSSTLRLVACEDTVPAVKGDGLGVLLPPRIILDC*