Information report for OsCSLD1;rth-2
Gene Details
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Functional Descriptions
- Here we show that the Oryza sativa cellulose synthase-like D1 (OsCSLD1) gene is required for root hair development, as rice (Oryza sativa) mutants that lack OsCSLD1 function develop abnormal root hairs.
- Because the csld1 mutants develop the same density and number of root hairs along their seminal root as the wild-type plants, we propose that OsCSLD1 function is required for hair elongation but not initiation.
- Both gene trap expression pattern and in situ hybridization analyses indicate that OsCSLD1 is expressed in only root hair cells.
- Given that the Arabidopsis (Arabidopsis thaliana) gene KOJAK/AtCSLD3 is required for root hair elongation and is expressed in the root hair, it appears that OsCSLD1 may be the functional ortholog of KOJAK/AtCSLD3 and that these two genes represent the root hair-specific members of this family of proteins.
- OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice.
- In situ hybridization showed that OsCSLD1 was expressed not only in root hairs but also in epidermal and cortex cell walls except for stele.
- qRT-PCR analysis revealed that OsCSLD1 was expressed not only in root but also in shoot.
- Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.).
- Positional cloning and complementation test revealed that the causal gene of rth2 was Cellulose Synthase-Like D1 (OsCSLD1).
- Furthermore, OsCSLD1 is the only member of the four rice CSLD genes that shows root-specific expression.
- OsCSLD1 Mediates NH(4)(+)-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.).
Literature and News
- Root hairless 2 rth2 mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.) . DOI: 10.1270/jsbbs.61.225
- OsCSLD1, a cellulose synthase-like D1 gene, is required for root hair morphogenesis in rice . DOI: 10.1104/pp.106.091546 ; PMID: 17259288
- OsCSLD1 Mediates NH4+-Dependent Root Hair Growth Suppression and AMT1;2 Expression in Rice (Oryza sativa L.) . DOI: 10.3390/plants11243580 ; PMID: 36559692
Gene Resources
- UniProt: Q8W3F9
- EMBL: AC027037, AK110534, AP008216
- AlphaFoldDB: Q8W3F9
- EnsemblPlants: Os10t0578200-01
- Gramene: Os10t0578200-01
- KEGG: dosa:Os10g0578200
- InterPro: IPR005150, IPR013083, IPR029044
- PANTHER: PTHR13301
- SUPFAM: SSF57850
- Gene3D: 3.30.40.10, 3.90.550.10
- OrthoDB: Q8W3F9
- SWISS-MODEL: Q8W3F9
Sequences
cDNA Sequence
- >LOC_Os10g42750.1
ATGGCGTCGAAGGGCATCCTCAAGAACGGCGGTAAGCCGCCGACGGCGCCATCGTCGGCGGCGCCCACGGTGGTGTTCGGTCGGCGGACGGACTCGGGGCGATTCATCAGCTACTCCCGCGACGACCTTGACTCGGAGATCAGCAGCGTGGACTTCCAGGACTACCACGTCCACATCCCCATGACGCCGGACAACCAGCCCATGGACCCTGCCGCCGGCGACGAGCAGCAGTACGTGTCCAGCTCGCTCTTCACCGGCGGGTTCAACAGCGTGACACGCGCGCACGTGATGGAGAAGCAGGCGTCGTCGGCGAGGGCGACGGTGTCGGCGTGCATGGTGCAGGGGTGCGGGTCCAAGATCATGCGCAACGGGCGCGGCGCCGACATCCTCCCCTGCGAGTGCGACTTCAAGATCTGCGTGGACTGCTTCACCGACGCCGTCAAGGGCGGCGGCGGCGTGTGCCCGGGGTGCAAGGAGCCGTACAAGCACGCGGAGTGGGAGGAGGTGGTGTCGGCGTCCAACCACGACGCCATCAACAGGGCGCTGTCGCTGCCGCACGGGCACGGGCATGGCCCCAAGATGGAGAGGCGGCTGTCGCTGGTGAAGCAGAACGGGGGGGCGCCCGGCGAGTTCGACCACAACCGCTGGCTCTTCGAGACCAAGGGCACCTACGGCTACGGCAACGCAATCTGGCCCGAGGACGACGGCGTGGCGGGGCACCCCAAGGAGCTGATGAGCAAGCCATGGCGGCCGCTGACCCGCAAGCTCCGGATCCAGGCGGCGGTGATCAGCCCGTACAGGCTGCTGGTCCTGATCCGGCTGGTGGCGCTGGGGTTGTTCCTGATGTGGCGCATCAAGCACCAGAACGAGGACGCCATCTGGCTGTGGGGGATGTCCATCGTGTGCGAGCTGTGGTTCGCCTTGTCGTGGGTGCTGGACCAGCTGCCCAAGCTGTGCCCCATCAACCGCGCCACCGACCTGAGCGTGCTCAAGGACAAGTTCGAGACGCCCACGCCGAGCAACCCCACCGGCAAGTCCGACCTCCCCGGGATCGACATCTTCGTCTCCACCGCCGACCCGGAGAAGGAGCCCGTGCTGGTGACGGCCAACACCATCCTCTCCATCCTGGCCGCCGACTACCCCGTCGACAAGTTGGCGTGCTACGTGTCCGACGACGGCGGGGCGCTGCTGACGTTCGAGGCCATGGCGGAGGCGGCGAGCTTCGCCAACCTGTGGGTGCCATTCTGCCGGAAGCACGAGATCGAGCCGAGGAACCCCGACAGCTACTTCAACCTCAAGAGGGACCCGTTCAAGAACAAGGTGAAGGGCGACTTCGTCAAGGACAGGCGGCGGGTGAAGCGGGAGTACGACGAGTTCAAGGTCCGCGTCAATGGCCTCCCCGACGCCATCCGCCGCCGCTCCGACGCGTACCACGCCCGCGAGGAGATCCAGGCCATGAACCTGCAGCGGGAGAAGATGAAGGCCGGCGGCGACGAGCAGCAGCTGGAGCCGATAAAGATCCCCAAGGCGACGTGGATGGCGGACGGCACGCACTGGCCGGGGACGTGGCTGCAGGCGTCGCCGGAGCACGCGAGGGGCGACCACGCGGGGATCATACAGGTGATGCTAAAGCCTCCCAGTCCCAGTCCCAGCAGCAGCGGCGGCGACATGGAAAAGAGGGTGGATTTGTCGGGCGTGGACACCCGGCTGCCGATGCTGGTGTACGTGTCGCGGGAGAAGCGGCCGGGGTACGACCACAACAAGAAGGCGGGCGCCATGAACGCGCTGGTGCGGGCGTCGGCGATCATGTCCAACGGGCCGTTCATCCTCAACCTGGACTGCGACCACTACGTGTACAACTCCAAGGCGTTCCGGGAGGGGATGTGCTTCATGATGGACCGCGGCGGCGACCGCCTCTGCTACGTCCAGTTCCCGCAGCGCTTCGAGGGCATCGACCCCTCCGACCGCTACGCCAACCACAACACCGTCTTCTTCGACGTCAACATGCGCGCCCTCGATGGCCTCCAGGGCCCCGTCTATGTCGGAACTGGCTGCCTCTTCCGCCGCATCGCGCTCTACGGCTTCGACCCGCCCAGGTCCAAGGACCACACCACCCCGTGGTCCTGCTGCCTGCCACGTCGCCGCCGAACAAGATCCCAGCCCCAGCCCCAGGAGGAGGAGGAGGAGACGATGGCCCTCCGCATGGACATGGACGGCGCGATGAACATGGCGAGCTTCCCCAAGAAGTTCGGCAACTCGAGCTTCCTGATCGACTCCATCCCGGTGGCGGAGTTCCAGGGACGGCCGCTGGCGGACCACCCGTCGGTGAAGAACGGGCGGCCGCCGGGGGCGCTGACGATCCCGCGGGAGACGCTGGACGCGTCGATCGTGGCGGAGGCGATCAGCGTGGTGTCGTGCTGGTACGAGGAGAAGACGGAGTGGGGGACGAGGGTGGGTTGGATATACGGGTCGGTGACGGAGGACGTGGTCACCGGCTACCGCATGCACAACCGGGGGTGGAAGTCCGTCTACTGCGTCACCCACCGCGACGCCTTCCGCGGCACCGCCCCCATCAACCTCACCGACCGCCTCCACCAGGTCCTCCGATGGGCCACTGGCTCCGTCGAGATCTTCTTCTCACGCAACAACGCACTCTTCGCTTCCTCAAAGATGAAGGTTCTCCAGCGCATCGCTTACCTCAACGTTGGCATCTACCCCTTCACCTCCGTCTTCCTCATCGTCTACTGCTTCCTCCCGGCGCTCTCCCTCTTCTCGGGGCAGTTCATCGTGCAGACGCTCAACGTCACCTTCCTCACCTACCTGCTCATCATCACCATCACGCTCTGCCTCCTGGCCATGCTGGAGATCAAGTGGTCCGGCATCGCGCTGGAGGAGTGGTGGCGGAACGAGCAGTTCTGGCTCATCGGCGGAACCAGCGCCCACCTCGCCGCCGTCCTGCAGGGCCTTCTCAAGGTCATCGCCGGCATCGAGATCTCCTTCACCCTCACCTCCAAGCAGCTCGGCGACGACGTCGACGACGAGTTCGCCGAGCTCTACGCGGTCAAGTGGACGTCCCTCATGATACCGCCGCTCACCATCATAATGATCAACCTCGTCGCCATCGCCGTCGGCTTCAGCCGCACCATCTACAGCACCATCCCGCAGTGGAGCAAGCTTCTCGGTGGAGTCTTCTTCAGCTTCTGGGTCCTCGCGCATCTCTACCCCTTCGCCAAGGGCCTCATGGGCAGGAGGGGAAGGACACCCACCATCGTCTACGTCTGGTCTGGCCTCGTCGCCATCACCATCTCCTTGCTCTGGATTGCAATCAAGCCTCCTTCTGCACAAGCCAACTCACAGCTAGGAGGATCCTTCTCTTTCCCCTGATATACATATATTCTCATTCCACACACCCAATCCAGACTACCTGTCTCTCTGCTATCTGCTTGCTTAGGATTCATTCATATGCTAGCTGGTCGATCGAGCTACCGCAGCCTAGGGAACATGATCATATCACCCACAGTCTGTTTGCTTCATGGAGCAAACTGCACTTCACCCCAGTCCAGATCTGCTTCTTCACAGTGAGTGAGATCACTATTTTTGCTTGTTTGTGATTTTTTTTTCTAAAATTGTTTAGAGCTCATTGTCATTTGAATGGCATTCCTAGAAAAGGGAGAAAGAAAAGACACTTGACATCAACACAGGTGTAATACATTGTTACTAGAGAATCGGCAATATAATGTTACTAGAGTATC
CDS Sequence
- >LOC_Os10g42750.1
ATGGCGTCGAAGGGCATCCTCAAGAACGGCGGTAAGCCGCCGACGGCGCCATCGTCGGCGGCGCCCACGGTGGTGTTCGGTCGGCGGACGGACTCGGGGCGATTCATCAGCTACTCCCGCGACGACCTTGACTCGGAGATCAGCAGCGTGGACTTCCAGGACTACCACGTCCACATCCCCATGACGCCGGACAACCAGCCCATGGACCCTGCCGCCGGCGACGAGCAGCAGTACGTGTCCAGCTCGCTCTTCACCGGCGGGTTCAACAGCGTGACACGCGCGCACGTGATGGAGAAGCAGGCGTCGTCGGCGAGGGCGACGGTGTCGGCGTGCATGGTGCAGGGGTGCGGGTCCAAGATCATGCGCAACGGGCGCGGCGCCGACATCCTCCCCTGCGAGTGCGACTTCAAGATCTGCGTGGACTGCTTCACCGACGCCGTCAAGGGCGGCGGCGGCGTGTGCCCGGGGTGCAAGGAGCCGTACAAGCACGCGGAGTGGGAGGAGGTGGTGTCGGCGTCCAACCACGACGCCATCAACAGGGCGCTGTCGCTGCCGCACGGGCACGGGCATGGCCCCAAGATGGAGAGGCGGCTGTCGCTGGTGAAGCAGAACGGGGGGGCGCCCGGCGAGTTCGACCACAACCGCTGGCTCTTCGAGACCAAGGGCACCTACGGCTACGGCAACGCAATCTGGCCCGAGGACGACGGCGTGGCGGGGCACCCCAAGGAGCTGATGAGCAAGCCATGGCGGCCGCTGACCCGCAAGCTCCGGATCCAGGCGGCGGTGATCAGCCCGTACAGGCTGCTGGTCCTGATCCGGCTGGTGGCGCTGGGGTTGTTCCTGATGTGGCGCATCAAGCACCAGAACGAGGACGCCATCTGGCTGTGGGGGATGTCCATCGTGTGCGAGCTGTGGTTCGCCTTGTCGTGGGTGCTGGACCAGCTGCCCAAGCTGTGCCCCATCAACCGCGCCACCGACCTGAGCGTGCTCAAGGACAAGTTCGAGACGCCCACGCCGAGCAACCCCACCGGCAAGTCCGACCTCCCCGGGATCGACATCTTCGTCTCCACCGCCGACCCGGAGAAGGAGCCCGTGCTGGTGACGGCCAACACCATCCTCTCCATCCTGGCCGCCGACTACCCCGTCGACAAGTTGGCGTGCTACGTGTCCGACGACGGCGGGGCGCTGCTGACGTTCGAGGCCATGGCGGAGGCGGCGAGCTTCGCCAACCTGTGGGTGCCATTCTGCCGGAAGCACGAGATCGAGCCGAGGAACCCCGACAGCTACTTCAACCTCAAGAGGGACCCGTTCAAGAACAAGGTGAAGGGCGACTTCGTCAAGGACAGGCGGCGGGTGAAGCGGGAGTACGACGAGTTCAAGGTCCGCGTCAATGGCCTCCCCGACGCCATCCGCCGCCGCTCCGACGCGTACCACGCCCGCGAGGAGATCCAGGCCATGAACCTGCAGCGGGAGAAGATGAAGGCCGGCGGCGACGAGCAGCAGCTGGAGCCGATAAAGATCCCCAAGGCGACGTGGATGGCGGACGGCACGCACTGGCCGGGGACGTGGCTGCAGGCGTCGCCGGAGCACGCGAGGGGCGACCACGCGGGGATCATACAGGTGATGCTAAAGCCTCCCAGTCCCAGTCCCAGCAGCAGCGGCGGCGACATGGAAAAGAGGGTGGATTTGTCGGGCGTGGACACCCGGCTGCCGATGCTGGTGTACGTGTCGCGGGAGAAGCGGCCGGGGTACGACCACAACAAGAAGGCGGGCGCCATGAACGCGCTGGTGCGGGCGTCGGCGATCATGTCCAACGGGCCGTTCATCCTCAACCTGGACTGCGACCACTACGTGTACAACTCCAAGGCGTTCCGGGAGGGGATGTGCTTCATGATGGACCGCGGCGGCGACCGCCTCTGCTACGTCCAGTTCCCGCAGCGCTTCGAGGGCATCGACCCCTCCGACCGCTACGCCAACCACAACACCGTCTTCTTCGACGTCAACATGCGCGCCCTCGATGGCCTCCAGGGCCCCGTCTATGTCGGAACTGGCTGCCTCTTCCGCCGCATCGCGCTCTACGGCTTCGACCCGCCCAGGTCCAAGGACCACACCACCCCGTGGTCCTGCTGCCTGCCACGTCGCCGCCGAACAAGATCCCAGCCCCAGCCCCAGGAGGAGGAGGAGGAGACGATGGCCCTCCGCATGGACATGGACGGCGCGATGAACATGGCGAGCTTCCCCAAGAAGTTCGGCAACTCGAGCTTCCTGATCGACTCCATCCCGGTGGCGGAGTTCCAGGGACGGCCGCTGGCGGACCACCCGTCGGTGAAGAACGGGCGGCCGCCGGGGGCGCTGACGATCCCGCGGGAGACGCTGGACGCGTCGATCGTGGCGGAGGCGATCAGCGTGGTGTCGTGCTGGTACGAGGAGAAGACGGAGTGGGGGACGAGGGTGGGTTGGATATACGGGTCGGTGACGGAGGACGTGGTCACCGGCTACCGCATGCACAACCGGGGGTGGAAGTCCGTCTACTGCGTCACCCACCGCGACGCCTTCCGCGGCACCGCCCCCATCAACCTCACCGACCGCCTCCACCAGGTCCTCCGATGGGCCACTGGCTCCGTCGAGATCTTCTTCTCACGCAACAACGCACTCTTCGCTTCCTCAAAGATGAAGGTTCTCCAGCGCATCGCTTACCTCAACGTTGGCATCTACCCCTTCACCTCCGTCTTCCTCATCGTCTACTGCTTCCTCCCGGCGCTCTCCCTCTTCTCGGGGCAGTTCATCGTGCAGACGCTCAACGTCACCTTCCTCACCTACCTGCTCATCATCACCATCACGCTCTGCCTCCTGGCCATGCTGGAGATCAAGTGGTCCGGCATCGCGCTGGAGGAGTGGTGGCGGAACGAGCAGTTCTGGCTCATCGGCGGAACCAGCGCCCACCTCGCCGCCGTCCTGCAGGGCCTTCTCAAGGTCATCGCCGGCATCGAGATCTCCTTCACCCTCACCTCCAAGCAGCTCGGCGACGACGTCGACGACGAGTTCGCCGAGCTCTACGCGGTCAAGTGGACGTCCCTCATGATACCGCCGCTCACCATCATAATGATCAACCTCGTCGCCATCGCCGTCGGCTTCAGCCGCACCATCTACAGCACCATCCCGCAGTGGAGCAAGCTTCTCGGTGGAGTCTTCTTCAGCTTCTGGGTCCTCGCGCATCTCTACCCCTTCGCCAAGGGCCTCATGGGCAGGAGGGGAAGGACACCCACCATCGTCTACGTCTGGTCTGGCCTCGTCGCCATCACCATCTCCTTGCTCTGGATTGCAATCAAGCCTCCTTCTGCACAAGCCAACTCACAGCTAGGAGGATCCTTCTCTTTCCCCTGA
Protein Sequence
- >LOC_Os10g42750.1
MASKGILKNGGKPPTAPSSAAPTVVFGRRTDSGRFISYSRDDLDSEISSVDFQDYHVHIPMTPDNQPMDPAAGDEQQYVSSSLFTGGFNSVTRAHVMEKQASSARATVSACMVQGCGSKIMRNGRGADILPCECDFKICVDCFTDAVKGGGGVCPGCKEPYKHAEWEEVVSASNHDAINRALSLPHGHGHGPKMERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYGNAIWPEDDGVAGHPKELMSKPWRPLTRKLRIQAAVISPYRLLVLIRLVALGLFLMWRIKHQNEDAIWLWGMSIVCELWFALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRVNGLPDAIRRRSDAYHAREEIQAMNLQREKMKAGGDEQQLEPIKIPKATWMADGTHWPGTWLQASPEHARGDHAGIIQVMLKPPSPSPSSSGGDMEKRVDLSGVDTRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYVYNSKAFREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKDHTTPWSCCLPRRRRTRSQPQPQEEEEETMALRMDMDGAMNMASFPKKFGNSSFLIDSIPVAEFQGRPLADHPSVKNGRPPGALTIPRETLDASIVAEAISVVSCWYEEKTEWGTRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTHRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKQLGDDVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP*