Information report for LIP1
Gene Details
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Functional Descriptions
- SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.
- Here we report the functional characterization of rice leaf inclination3 (LC3), a SPOC domain-containing transcription suppressor, in regulating leaf inclination through interacting with LIP1 (LC3-interacting protein 1), a HIT zinc finger domain-containing protein.
Literature and News
Gene Resources
- UniProt: Q337A7
- EMBL: AP014966, DP000086
- AlphaFoldDB: Q337A7
- EnsemblPlants: Os10t0520700-01
- Gramene: Os10t0520700-01
- KEGG: dosa:Os10g0520700, osa:4349140
- Orthologous matrix: LMPDYKP
- InterPro: IPR007009, IPR007529, IPR039646
- PANTHER: PTHR15555, PTHR15555:SF0
- SUPFAM: SSF144232
- PROSITE: PS51083
- Gene3D: 3.30.60.190
- OrthoDB: Q337A7
- SWISS-MODEL: Q337A7
- Conserved Domain Database: cd23024
- eggNOG: KOG4317
Sequences
cDNA Sequence
- >LOC_Os10g37640.1
GAAATCTCCGAACCCGCCGCGGCGCACACCGGAATCCACCGCCGACGCTCCGGCGCCACCGAGGGAGGGGGTGAGGAACGCGGGGGAGAAGCGTCGTAGGCGAGGTGCCGGCGATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGAGCGTGAGAATGTATTGATGCAAGTGATACTCATAATCTTCTTACCCCTATATCAGCTGTATCATGTATGGCTGTATAATCTTTGTTGTAAAGAACTTCGGATGTTACTTCCCCATGAGTTTCTGATGTCAAATCTGATATGTTAAAGGAGTTGTATGCAATTCTGAAATCCTGATATGAAAGCCATATTGGCAGAATTCAGATGCCAAATTCTGCAATTCTGAAT - >LOC_Os10g37640.2
GAAATCTCCGAACCCGCCGCGGCGCACACCGGAATCCACCGCCGACGCTCCGGCGCCACCGAGGGAGGGGGTGAGGAACGCGGGGGAGAAGCGTCGTAGGCGAGGTGCCGGCGATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGAGCGTGAGAATGTATTGATGCAAGTGATACTCATAATCTTCTTACCCCTATATCAGCTGTATCATGTATGGCTGTATAATCTTTGTTGTAAAGAACTTCGGATGTTACTTCCCCATGAGTTTCTGATGTCAAATCTGATATGTTAAAGGAGTTGTATGCAATTCTGAAATCCTGATATGAAAGCCATATTGGCAGAATTCAGATGCCAAATTCTGCAATTCTGAAT
CDS Sequence
- >LOC_Os10g37640.1
ATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGA - >LOC_Os10g37640.2
ATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGA
Protein Sequence
- >LOC_Os10g37640.1
MEREVVVSEDAAASSSSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELKQMQPEDESKKKMLDILKRFHLEEEDMDSEGEDESILSEELIQKVMSGDEIKLEDLSDDEIKRFRQALASGELSKMIEPWTPWWKKPSARSISLSPDGSQLIRQVSVEDTDTSDPMADPESSISEIPEGPESALPSLEQLTRAEPSPLLAVHLVDILYSYCFTLRLHNGDWRSDPFGASTVALSVSKVMGEDAKPETVSEALTACIEETCSPAYRHTGGFRFAIALVDDIISLLTLGGNALVCALCDFRRLIHIGERMLKAEKLGKAERSRSTQKLRAADRKLYFMTCWVHEQPNEAWSSLARLVEVQKASLEELDCGSQFQRAGRKNDAQSKVLIEEI* - >LOC_Os10g37640.2
MEREVVVSEDAAASSSSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELKQMQPEDESKKKMLDILKRFHLEEEDMDSEGEDESILSEELIQKVMSGDEIKLEDLSDDEIKRFRQALASGELSKMIEPWTPWWKKPSARSISLSPDGSQLIRQVSVEDTDTSDPMADPESSISEIPEGPESALPSLEQLTRAEPSPLLAVHLVDILYSYCFTLRLHNGDWRSDPFGASTVALSVSKVMGEDAKPETVSEALTACIEETCSPAYRHTGGFRFAIALVDDIISLLTLGGNALVCALCDFRRLIHIGERMLKAEKLGKAERSRSTQKLRAADRKLYFMTCWVHEQPNEAWSSLARLVEVQKASLEELDCGSQFQRAGRKNDAQSKVLIEEI*