Gene Details:
- MSU gene ID: LOC_Os10g37640
- RAPdb gene ID: Os10g0520700
- Gene Symbol: LIP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.
- Here we report the functional characterization of rice leaf inclination3 (LC3), a SPOC domain-containing transcription suppressor, in regulating leaf inclination through interacting with LIP1 (LC3-interacting protein 1), a HIT zinc finger domain-containing protein.
Function-related keywords:
Literature:
- SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling . DOI: 10.1371/journal.pgen.1007829 ; PMID: 30496185
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os10g37640.1
GAAATCTCCGAACCCGCCGCGGCGCACACCGGAATCCACCGCCGACGCTCCGGCGCCACCGAGGGAGGGGGTGAGGAACGCGGGGGAGAAGCGTCGTAGGCGAGGTGCCGGCGATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGAGCGTGAGAATGTATTGATGCAAGTGATACTCATAATCTTCTTACCCCTATATCAGCTGTATCATGTATGGCTGTATAATCTTTGTTGTAAAGAACTTCGGATGTTACTTCCCCATGAGTTTCTGATGTCAAATCTGATATGTTAAAGGAGTTGTATGCAATTCTGAAATCCTGATATGAAAGCCATATTGGCAGAATTCAGATGCCAAATTCTGCAATTCTGAAT - >LOC_Os10g37640.2
GAAATCTCCGAACCCGCCGCGGCGCACACCGGAATCCACCGCCGACGCTCCGGCGCCACCGAGGGAGGGGGTGAGGAACGCGGGGGAGAAGCGTCGTAGGCGAGGTGCCGGCGATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGAGCGTGAGAATGTATTGATGCAAGTGATACTCATAATCTTCTTACCCCTATATCAGCTGTATCATGTATGGCTGTATAATCTTTGTTGTAAAGAACTTCGGATGTTACTTCCCCATGAGTTTCTGATGTCAAATCTGATATGTTAAAGGAGTTGTATGCAATTCTGAAATCCTGATATGAAAGCCATATTGGCAGAATTCAGATGCCAAATTCTGCAATTCTGAAT
CDS Sequence
- >LOC_Os10g37640.1
ATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGA - >LOC_Os10g37640.2
ATGGAGAGGGAAGTCGTGGTCTCCGAGGACGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCGTTCTCCCTCGCGGAAACCAGGGTCATCTGCCGCGTGTGCCAGAAGCAGTTCGCGCAGTACACTTGCCCCCGTTGTAACGCCCGGTACTGCTCGCTCCCGTGCTACAAGGGGCATAGTGTTCAGTGCACTGAATCCTTCATGCGTGAGAATGTTATGGATGAGCTTAAGCAGATGCAACCTGAAGATGAATCAAAGAAGAAGATGTTAGACATACTTAAAAGGTTCCACTTGGAAGAAGAAGATATGGATTCAGAAGGCGAAGATGAGTCAATTCTGTCAGAGGAGCTTATTCAAAAAGTTATGTCTGGAGATGAGATCAAGCTTGAAGACCTCTCTGATGATGAAATCAAACGATTTCGTCAAGCTCTGGCTTCAGGTGAACTCAGCAAGATGATCGAGCCATGGACACCATGGTGGAAAAAACCTTCCGCTAGATCGATTTCCCTCAGTCCAGATGGAAGCCAGCTTATCAGACAAGTGAGTGTAGAAGACACTGATACGTCAGATCCAATGGCTGACCCAGAGTCTAGCATCAGTGAAATCCCAGAAGGGCCAGAATCTGCTCTCCCGTCACTCGAACAGCTAACCAGAGCGGAGCCATCTCCGCTGCTTGCGGTTCACTTGGTTGATATACTGTACAGTTACTGCTTCACACTTCGCCTCCACAATGGCGATTGGCGCTCTGATCCTTTTGGTGCCTCTACTGTTGCGTTGTCTGTGTCAAAAGTCATGGGGGAGGATGCTAAACCTGAGACAGTATCTGAAGCCCTCACGGCATGTATAGAGGAGACATGCTCACCGGCTTACAGGCACACCGGAGGTTTCAGGTTTGCTATAGCTCTCGTGGATGATATCATCAGCCTTCTCACGTTAGGAGGCAATGCGCTTGTTTGTGCCCTCTGTGACTTCCGCAGGCTCATTCATATCGGTGAGAGGATGCTCAAGGCAGAGAAATTGGGCAAGGCGGAGCGATCACGGAGCACCCAAAAGCTTCGTGCCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTCGTTGAGGTGCAGAAAGCATCTCTGGAGGAGTTGGATTGCGGGAGTCAATTTCAAAGGGCTGGTAGAAAGAACGATGCCCAATCCAAGGTTCTTATTGAGGAGATTTGA
Protein Sequence
- >LOC_Os10g37640.1
MEREVVVSEDAAASSSSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELKQMQPEDESKKKMLDILKRFHLEEEDMDSEGEDESILSEELIQKVMSGDEIKLEDLSDDEIKRFRQALASGELSKMIEPWTPWWKKPSARSISLSPDGSQLIRQVSVEDTDTSDPMADPESSISEIPEGPESALPSLEQLTRAEPSPLLAVHLVDILYSYCFTLRLHNGDWRSDPFGASTVALSVSKVMGEDAKPETVSEALTACIEETCSPAYRHTGGFRFAIALVDDIISLLTLGGNALVCALCDFRRLIHIGERMLKAEKLGKAERSRSTQKLRAADRKLYFMTCWVHEQPNEAWSSLARLVEVQKASLEELDCGSQFQRAGRKNDAQSKVLIEEI* - >LOC_Os10g37640.2
MEREVVVSEDAAASSSSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELKQMQPEDESKKKMLDILKRFHLEEEDMDSEGEDESILSEELIQKVMSGDEIKLEDLSDDEIKRFRQALASGELSKMIEPWTPWWKKPSARSISLSPDGSQLIRQVSVEDTDTSDPMADPESSISEIPEGPESALPSLEQLTRAEPSPLLAVHLVDILYSYCFTLRLHNGDWRSDPFGASTVALSVSKVMGEDAKPETVSEALTACIEETCSPAYRHTGGFRFAIALVDDIISLLTLGGNALVCALCDFRRLIHIGERMLKAEKLGKAERSRSTQKLRAADRKLYFMTCWVHEQPNEAWSSLARLVEVQKASLEELDCGSQFQRAGRKNDAQSKVLIEEI*