Information report for OsYABBY3;OsYAB4
Gene Details
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Functional Descriptions
- RNAi knockdown of TOB2 or TOB3 in the tob1 mutant caused abnormal spikelet development.
- Furthermore, simultaneous knockdown of both TOB2 and TOB3 in tob1 affected not only spikelet, but also inflorescence development.
- In addition, TAP physically interacts with OsYAB4 and OsYAB5 proteins; phenotypic analysis of OsYAB4 tap-1 and osyab5 tap-1 double mutants indicates that TAP-OsYAB4/OsYAB5 complexes act to maintain normal panicle and spikelet development.
Functional Keywords
Literature and News
- Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1 . DOI: 10.1007/s00438-006-0202-0 ; PMID: 17216490
- Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice . DOI: 10.1111/nph.14617 ; PMID: 28556940
- THERMOSENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature . DOI: 10.1111/nph.18551 ; PMID: 36263719
Gene Resources
- UniProt: Q8L556
- EMBL: AB274015, AC090870, AC091122
- AlphaFoldDB: Q8L556
- EnsemblPlants: Os10t0508300-01
- Gramene: Os10t0508300-01
- KEGG: dosa:Os10g0508300
- Orthologous matrix: RATLACN
- InterPro: IPR006780, IPR036910
- PANTHER: PTHR31675, PTHR31675:SF0
- SUPFAM: SSF47095
- Gene3D: 1.10.30.10
- OrthoDB: Q8L556
- SWISS-MODEL: Q8L556
- Conserved Domain Database: cd00084
- eggNOG: ENOG502QQ88
Sequences
cDNA Sequence
- >LOC_Os10g36420.1
AGAGAGAGAGAGAGAGAGAGAGATCGAGCAGCTAGGAGATAAAAAAAATTGGAAGTATTAATATTATATTCTGCTACAAAAGCGAGAGAGAGCTAGCTGCAAAGAGAGAAGCAAGCAATCGTGTTCTTGTTTGCTGCGTCTGCGTCGAATCAGTCGAGAAGAGAGGGTTTGATTTGGGATGTCGTCGTCGTCCTCGTCGTCGGCGTCGTCGGCGGCGGCGGCCGCGTTTCGGCCGGCTGTTGTGCAGCGGGAGCAGCAGGTGGTGGAGGAGAAATTCCCCGCGGCGGCGGCGGCGATGCGGGAGATGGTCCTCCCGCCGGTGGCGGCGGCGGCGGCGGACTCCGAGCAGGAGCAGCTCTGCTACGTGCACTGCCACTACTGCGACACCGTGCTCGTCGTGAGCGTGCCGAGCAGCAGCCTGTTCGAGACGGTGACGGTGAGGTGCGGCCACTGCAGCAGCCTCCTCACCGTCAACATGAGGGGCCTCCTCCTCCCGACCACCGCCGCCGCCGCGCCACCACCACCTCCTCCCCCGCCGCCGCCGCCGCCGCCGCCGGCCGCGCACTTCCCCCACTCGCTCAACCTCGCGCCGGCCAACCCTCCCCACCACCACTCCCTCCTGGATGAGATATCGACGGCGAACTCCCCGACGCAGCTGCTGCTGGAGCAGCACGGCCTCGGCGGCCTCATGGCGAGCGCGGCAAGCTGCAGGAACAACAACTCCCCGGCGGCGGCGGCGGCTCCGCCGCCGCCAACGTCGCAGGGGAAAGCGGCGGCGAAAGAGCCGTCGCCCCGGACGAACACCGCCGTCATCAACAGACCTCCGGAGAAGAGGCAGCGTGTGCCATCGGCGTACAACCGCTTCATCAAGGACGAAATCCAACGCATCAAGGCTGGCAATCCCGACATCTCGCACAGGGAGGCCTTCAGCGCGGCTGCCAAGAACTGGGCACACTTTCCGCACATCCACTTTGGACTGATGCCGGATCACCAGGGGCTCAAGAAGACCAGCCTGCTTCCTCAGGATCATCAGAGAAAGGATGGGCTACTAAAGGAAGGGCTTTATGCAGCGGCAGCTGCTGCTGCGGCGGCGGCCAACATGGGTGTTGCACCGTACTAAGCCCAGCTAGAATAATTAGTGAGAAGTTAGTTACTATCTACCAAGTCTAGCTAGCTCATCAATTAACTAGTGTGTTCTTCCTATCAAGCTATCTAGGGCTTCCTGATCATCTCTCTTGTTATTAATGAAGTGTACTGTCTCTGTGCGTTGGTTTCACCTAGGTATAATCTGATCATCTAGCTAGCTAATTGAGCTTCTTCTGCTA
CDS Sequence
- >LOC_Os10g36420.1
ATGTCGTCGTCGTCCTCGTCGTCGGCGTCGTCGGCGGCGGCGGCCGCGTTTCGGCCGGCTGTTGTGCAGCGGGAGCAGCAGGTGGTGGAGGAGAAATTCCCCGCGGCGGCGGCGGCGATGCGGGAGATGGTCCTCCCGCCGGTGGCGGCGGCGGCGGCGGACTCCGAGCAGGAGCAGCTCTGCTACGTGCACTGCCACTACTGCGACACCGTGCTCGTCGTGAGCGTGCCGAGCAGCAGCCTGTTCGAGACGGTGACGGTGAGGTGCGGCCACTGCAGCAGCCTCCTCACCGTCAACATGAGGGGCCTCCTCCTCCCGACCACCGCCGCCGCCGCGCCACCACCACCTCCTCCCCCGCCGCCGCCGCCGCCGCCGCCGGCCGCGCACTTCCCCCACTCGCTCAACCTCGCGCCGGCCAACCCTCCCCACCACCACTCCCTCCTGGATGAGATATCGACGGCGAACTCCCCGACGCAGCTGCTGCTGGAGCAGCACGGCCTCGGCGGCCTCATGGCGAGCGCGGCAAGCTGCAGGAACAACAACTCCCCGGCGGCGGCGGCGGCTCCGCCGCCGCCAACGTCGCAGGGGAAAGCGGCGGCGAAAGAGCCGTCGCCCCGGACGAACACCGCCGTCATCAACAGACCTCCGGAGAAGAGGCAGCGTGTGCCATCGGCGTACAACCGCTTCATCAAGGACGAAATCCAACGCATCAAGGCTGGCAATCCCGACATCTCGCACAGGGAGGCCTTCAGCGCGGCTGCCAAGAACTGGGCACACTTTCCGCACATCCACTTTGGACTGATGCCGGATCACCAGGGGCTCAAGAAGACCAGCCTGCTTCCTCAGGATCATCAGAGAAAGGATGGGCTACTAAAGGAAGGGCTTTATGCAGCGGCAGCTGCTGCTGCGGCGGCGGCCAACATGGGTGTTGCACCGTACTAA
Protein Sequence
- >LOC_Os10g36420.1
MSSSSSSSASSAAAAAFRPAVVQREQQVVEEKFPAAAAAMREMVLPPVAAAAADSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLPQDHQRKDGLLKEGLYAAAAAAAAAANMGVAPY*