Gene Details:
- MSU gene ID: LOC_Os10g35550
- RAPdb gene ID: Os10g0498600
- Gene Symbol: Du1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- To understand the molecular mechanism that regulates the starch biosynthesis in rice grains, we characterized a classic rice mutant dull endosperm1 (Du1) and isolated Du1 through a map-based cloning approach.
- Du1, encoding a member of pre-mRNA processing (Prp1) family, is expressed mainly in panicles.
- Du1 specifically affects the splicing efficiency of Wx(b) and regulates starch biosynthesis by mediating the expression of starch biosynthesis genes.
- These results strongly suggest that Du1 may function as a regulator of the starch biosynthesis by affecting the splicing of Wx(b) and the expression of other genes involved in the rice starch biosynthetic pathways.
- Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.).
Function-related keywords:
- grain , panicle , endosperm , starch-biosynthesis , starch
Literature:
- Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.) . DOI: 10.1007/s11103-007-9186-3 ; PMID: 17579813
Related News:
Gene Resources:
- NCBI ID: NP_922169
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os10g35550.1
ATTCTTCCTCACGACCTCAAAAACCCAAACCAATCTACTCCGCCGCCGCCGCCGCGATGGTGTTCGTCCGCGCGCCGGACGGGAGGACCCACCACGTCGACCTCGACCCCTCCACCGCCACGCTCGCCGACCTCACGGCCTCCGCCTCCCGCGTCTGCGGCGGCGTCCCGCCGGAGCAGCTGCGGCTCTACCTCGCCCACCGCCGCCTCCTCCCGGCCGAGCCGTCCCCGCTGCTGTCCTCCCTCCGGGTCTCGGCCTCCTCCTCCCTGCTACTCCACCTCCCCCTGCTCGGAGGGATGACCGGCCCGACGACGACCCCCGCGGCACCCCCGCCCCCGCCGCCGCCGTCGGCGCAGCCGCCCGCCCGCCCCGCGCGCTACGACTTCCTCAACTCCAAGCCGCCCCCGAACTACGTGGCCGGTCTGGGGCGTGGCGCCACCGGGTTCACCACCCGTTCGGATATCGGGCCGGCCCGCGCGGCGCCCGATCTGCCTGACCGGTCCGCCGCCGCCGCCGCCGCCCCCGCCGTCGGGCGCGGCCGTGGGAAGCCACCCGGGGACGACGACGGCGACGACGATGGCGGCGACGAGGAGAAGGGGTACGACGAGAACCAGAAGTTCGACGAGTTCGAGGGCAACGACGCCGGGCTGTTCTCCAACGCCGACTACGACGACGACGACCGCGAGGCGGATGCGGTCTGGGAGAGCATCGACCAGAGGATGGACTCTCGCCGGAAGGATCGGCGGGAGGCGCGGCTGAAGCAGGAGATCGAGAAGTACCGTGCTTCCAACCCTAAGATCACCGAGCAATTCGCTGATTTGAAGCGTAAGTTGGTCGATTTGTCGGCGCAGGAGTGGGAAAGCATACCTGAAATTGGGGACTACTCGCTGCGCAACAAGAAGAAGCGATTTGAGAGCTTCGTTCCCGTGCCGGACACCCTGCTCGAGAAGGCTCGGCAGGAGCAGGAGCATGTCACGGCACTGGATCCCAAGAGCCGTGCAGCTGGTGGCACCGAGACGCCATGGGCGCAGACTCCGGTTACCGATCTGACGGCTGTGGGCGAAGGTCGTGGCACCGTGCTCTCCTTGAAGCTGGACAGGTTGTCGGATTCGGTATCTGGTCTTACTGTTGTTGATCCAAAGGGTTACTTGACGGACCTGAAAAGTATGAAGATTACTAGTGATGCTGAGATTTCTGACATTAAAAAGGCGCGATTGTTGCTTAAGTCAGTGACACAGACAAACCCGAAGCATCCACCAGGATGGATTGCTGCTGCTAGGCTTGAAGAGGTTGCTGGCAAGCTTCAGGTTGCTCGGCAGCTTATCCAGCGTGGCTGTGAGGAGTGCCCCACAAATGAGGATGTTTGGGTCGAGGCATGCCGGCTGGCCAGCCCAGACGAGGCAAAGGCAGTGATTGCTAGGGGCGTGAAGGCAATTCCCAATTCTGTGAAGCTGTGGTTGCAGGCAGCAAAGTTGGAAACTAGTGATTTGAATAAGAGCAGGGTTTTGAGAAAAGGGTTGGAACACATTCCTGATTCAGTCAGACTGTGGAAAGCAGTAGTAGAGCTTGCAAATGAGGAGGATGCAAGACTGTTGCTTCACAGGGCTGTGGAGTGCTGCCCACTCCATGTGGAACTGTGGCTTGCCCTAGCAAGGCTGGAGACATATGACCAAGCAAAGAAGGTACTTAACAAGGCAAGAGAAAAGCTTCCTAAGGAACCTGCCATCTGGATTACAGCTGCAAAGCTGGAGGAAGCTAATGGAAACACCCAGTCAGTAATCAAGGTGATTGAGAGAAGTATAAAAACTTTACAGAGAGAAGGATTGGATATTGACAGGGAGGCATGGCTAAAGGAAGCAGAAGCTGCTGAGCGTGCTGGATCTGTATTGACTTGCCAGGCTATTGTTAAGAGCACTATTGGCATTGGTGTTGATGAGGAAGACAGAAAACGCACATGGGTTGCCGATGCTGAGGAATGCAAGAAGCGTGGTTCAATTGAGACAGCCCGTGCCATCTATGCGCATGCACTCAGTGTCTTCGTTTCCAAGAAGAGTATTTGGCTGAAAGCGGCTCAGCTTGAGAAGAGCCATGGAACCAAGGAGTCTCTTTATAATCTCCTCAGAAAGGCTGTTACCTACAATCCACGTGCAGAAGTTTTATGGCTTATGAGTGCAAAGGAGAAATGGCTGGCTGGAGATGTCCCGGCTGCCCGAGCCATTCTTCAGGAAGCTTATGCTTCTCTCCCCAATTCAGAGGAGATCTGGCTAGCTGCCTTCAAGCTTGAGTTTGAGAACAATGAACCAGAGAGAGCAAGAATTCTTTTGTCAAAGGCCAGGGAAAGAGGAGGCACTGAGAGGGTCTGGATGAAATCTGCGATTGTTGAAAGGGAGTTAGGGAATGTAGACGAAGAAAGGAAGCTGTTGGAGGAAGGTCTGAAGTTATTCCCCTCATTCTTCAAGCTGTGGTTAATGCTTGGACAAATGGAAGACCGGCTTGGCCATGGATCCAAGGCAAAGGAGGTTTACGAGAATGCACTGAAGCACTGCCCGAGTTGCATCCCTCTTTGGCTCTCTCTAGCTAATCTAGAGGAGAAGATAAATGGCTTGAGCAAGTCACGTGCTGTCCTCACCATGGCAAGAAAGAAGAACCCAGCTACACCTGAACTCTGGCTTGCAGCAGTTAGGGCTGAATTGAGACATGGGAACAAGAAGGAAGCTGATGCTCTACTAGCCAAGGCATTACAGGAATGCCCGACAAGTGGTATTTTGTGGGCTGCAGCTATAGAGATGGTGCCACGTCCCCAGCGTAAAGCAAAGAGCTCAGATGCTATAAAACGATGTGACCATGATCCCCATGTCATTGCAGCTGTGGCCAAACTTTTCTGGCATGATAGGAAGGTTGATAAAGCTAGAAGTTGGTTGAATAGAGCTGTTACTCTTGCTCCAGACATTGGAGATTTTTGGGCCTTGTACTACAAATTTGAACTGCAACATGGAAATGCTGATACACAAAAGGATGTCCTACAAAGATGTGTTGCAGCAGAACCAAAGCATGGAGAGAGATGGCAAGCAATAACAAAGGCTGTTGAGAACTCACATCTGTCAATTGAGGCCCTTCTGAAGAAAGCTGTGTTGGCTCTTGGCCAGGAAGAAAATCCAAATGCTGCAGATCCCTAGTTTGTCTCACTTTTAACTTTTGATAAGTCTGGTCACAGGTCTAATTCTTCTGCGCATGCTGGCAATGGAATATATAGAGAAAGAAACACAGTTGGGTAGTGAACTGGGATGGACTCGAGCTGCGACCTCGTGATTCTGTGTACCACCGAACTGATTGCTGCACTCCTCCAACCATGAAGCCTTACCTGAAGAAGAATCAGGCATGCGATTACTACAATTTGTATCGGCGATCACCAGTTAAAACCTGTATCGTTTGTATGCCCTAATTGCCAGCAATACTTCTGTACTACCATGAGCATGTTTATTCCTCCAGATGCATACCACAAATTCTTAGATGGGTGTATTTGCTAGCCGCGACTTGGGATGATGTAATTTTTCTTGGGTTCGGTTTATTCTCAGAGCACTGGCGTCTGTATCTACGACTGTAAGATCTGCCTGAATGTCGGCTTAATATATGAGATAATGCCCCATTTTTCAGCACAGGCTGTGAGCATTTCTTC
CDS Sequence
- >LOC_Os10g35550.1
ATGGTGTTCGTCCGCGCGCCGGACGGGAGGACCCACCACGTCGACCTCGACCCCTCCACCGCCACGCTCGCCGACCTCACGGCCTCCGCCTCCCGCGTCTGCGGCGGCGTCCCGCCGGAGCAGCTGCGGCTCTACCTCGCCCACCGCCGCCTCCTCCCGGCCGAGCCGTCCCCGCTGCTGTCCTCCCTCCGGGTCTCGGCCTCCTCCTCCCTGCTACTCCACCTCCCCCTGCTCGGAGGGATGACCGGCCCGACGACGACCCCCGCGGCACCCCCGCCCCCGCCGCCGCCGTCGGCGCAGCCGCCCGCCCGCCCCGCGCGCTACGACTTCCTCAACTCCAAGCCGCCCCCGAACTACGTGGCCGGTCTGGGGCGTGGCGCCACCGGGTTCACCACCCGTTCGGATATCGGGCCGGCCCGCGCGGCGCCCGATCTGCCTGACCGGTCCGCCGCCGCCGCCGCCGCCCCCGCCGTCGGGCGCGGCCGTGGGAAGCCACCCGGGGACGACGACGGCGACGACGATGGCGGCGACGAGGAGAAGGGGTACGACGAGAACCAGAAGTTCGACGAGTTCGAGGGCAACGACGCCGGGCTGTTCTCCAACGCCGACTACGACGACGACGACCGCGAGGCGGATGCGGTCTGGGAGAGCATCGACCAGAGGATGGACTCTCGCCGGAAGGATCGGCGGGAGGCGCGGCTGAAGCAGGAGATCGAGAAGTACCGTGCTTCCAACCCTAAGATCACCGAGCAATTCGCTGATTTGAAGCGTAAGTTGGTCGATTTGTCGGCGCAGGAGTGGGAAAGCATACCTGAAATTGGGGACTACTCGCTGCGCAACAAGAAGAAGCGATTTGAGAGCTTCGTTCCCGTGCCGGACACCCTGCTCGAGAAGGCTCGGCAGGAGCAGGAGCATGTCACGGCACTGGATCCCAAGAGCCGTGCAGCTGGTGGCACCGAGACGCCATGGGCGCAGACTCCGGTTACCGATCTGACGGCTGTGGGCGAAGGTCGTGGCACCGTGCTCTCCTTGAAGCTGGACAGGTTGTCGGATTCGGTATCTGGTCTTACTGTTGTTGATCCAAAGGGTTACTTGACGGACCTGAAAAGTATGAAGATTACTAGTGATGCTGAGATTTCTGACATTAAAAAGGCGCGATTGTTGCTTAAGTCAGTGACACAGACAAACCCGAAGCATCCACCAGGATGGATTGCTGCTGCTAGGCTTGAAGAGGTTGCTGGCAAGCTTCAGGTTGCTCGGCAGCTTATCCAGCGTGGCTGTGAGGAGTGCCCCACAAATGAGGATGTTTGGGTCGAGGCATGCCGGCTGGCCAGCCCAGACGAGGCAAAGGCAGTGATTGCTAGGGGCGTGAAGGCAATTCCCAATTCTGTGAAGCTGTGGTTGCAGGCAGCAAAGTTGGAAACTAGTGATTTGAATAAGAGCAGGGTTTTGAGAAAAGGGTTGGAACACATTCCTGATTCAGTCAGACTGTGGAAAGCAGTAGTAGAGCTTGCAAATGAGGAGGATGCAAGACTGTTGCTTCACAGGGCTGTGGAGTGCTGCCCACTCCATGTGGAACTGTGGCTTGCCCTAGCAAGGCTGGAGACATATGACCAAGCAAAGAAGGTACTTAACAAGGCAAGAGAAAAGCTTCCTAAGGAACCTGCCATCTGGATTACAGCTGCAAAGCTGGAGGAAGCTAATGGAAACACCCAGTCAGTAATCAAGGTGATTGAGAGAAGTATAAAAACTTTACAGAGAGAAGGATTGGATATTGACAGGGAGGCATGGCTAAAGGAAGCAGAAGCTGCTGAGCGTGCTGGATCTGTATTGACTTGCCAGGCTATTGTTAAGAGCACTATTGGCATTGGTGTTGATGAGGAAGACAGAAAACGCACATGGGTTGCCGATGCTGAGGAATGCAAGAAGCGTGGTTCAATTGAGACAGCCCGTGCCATCTATGCGCATGCACTCAGTGTCTTCGTTTCCAAGAAGAGTATTTGGCTGAAAGCGGCTCAGCTTGAGAAGAGCCATGGAACCAAGGAGTCTCTTTATAATCTCCTCAGAAAGGCTGTTACCTACAATCCACGTGCAGAAGTTTTATGGCTTATGAGTGCAAAGGAGAAATGGCTGGCTGGAGATGTCCCGGCTGCCCGAGCCATTCTTCAGGAAGCTTATGCTTCTCTCCCCAATTCAGAGGAGATCTGGCTAGCTGCCTTCAAGCTTGAGTTTGAGAACAATGAACCAGAGAGAGCAAGAATTCTTTTGTCAAAGGCCAGGGAAAGAGGAGGCACTGAGAGGGTCTGGATGAAATCTGCGATTGTTGAAAGGGAGTTAGGGAATGTAGACGAAGAAAGGAAGCTGTTGGAGGAAGGTCTGAAGTTATTCCCCTCATTCTTCAAGCTGTGGTTAATGCTTGGACAAATGGAAGACCGGCTTGGCCATGGATCCAAGGCAAAGGAGGTTTACGAGAATGCACTGAAGCACTGCCCGAGTTGCATCCCTCTTTGGCTCTCTCTAGCTAATCTAGAGGAGAAGATAAATGGCTTGAGCAAGTCACGTGCTGTCCTCACCATGGCAAGAAAGAAGAACCCAGCTACACCTGAACTCTGGCTTGCAGCAGTTAGGGCTGAATTGAGACATGGGAACAAGAAGGAAGCTGATGCTCTACTAGCCAAGGCATTACAGGAATGCCCGACAAGTGGTATTTTGTGGGCTGCAGCTATAGAGATGGTGCCACGTCCCCAGCGTAAAGCAAAGAGCTCAGATGCTATAAAACGATGTGACCATGATCCCCATGTCATTGCAGCTGTGGCCAAACTTTTCTGGCATGATAGGAAGGTTGATAAAGCTAGAAGTTGGTTGAATAGAGCTGTTACTCTTGCTCCAGACATTGGAGATTTTTGGGCCTTGTACTACAAATTTGAACTGCAACATGGAAATGCTGATACACAAAAGGATGTCCTACAAAGATGTGTTGCAGCAGAACCAAAGCATGGAGAGAGATGGCAAGCAATAACAAAGGCTGTTGAGAACTCACATCTGTCAATTGAGGCCCTTCTGAAGAAAGCTGTGTTGGCTCTTGGCCAGGAAGAAAATCCAAATGCTGCAGATCCCTAG
Protein Sequence
- >LOC_Os10g35550.1
MVFVRAPDGRTHHVDLDPSTATLADLTASASRVCGGVPPEQLRLYLAHRRLLPAEPSPLLSSLRVSASSSLLLHLPLLGGMTGPTTTPAAPPPPPPPSAQPPARPARYDFLNSKPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSAAAAAAPAVGRGRGKPPGDDDGDDDGGDEEKGYDENQKFDEFEGNDAGLFSNADYDDDDREADAVWESIDQRMDSRRKDRREARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGGTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKLQVARQLIQRGCEECPTNEDVWVEACRLASPDEAKAVIARGVKAIPNSVKLWLQAAKLETSDLNKSRVLRKGLEHIPDSVRLWKAVVELANEEDARLLLHRAVECCPLHVELWLALARLETYDQAKKVLNKAREKLPKEPAIWITAAKLEEANGNTQSVIKVIERSIKTLQREGLDIDREAWLKEAEAAERAGSVLTCQAIVKSTIGIGVDEEDRKRTWVADAEECKKRGSIETARAIYAHALSVFVSKKSIWLKAAQLEKSHGTKESLYNLLRKAVTYNPRAEVLWLMSAKEKWLAGDVPAARAILQEAYASLPNSEEIWLAAFKLEFENNEPERARILLSKARERGGTERVWMKSAIVERELGNVDEERKLLEEGLKLFPSFFKLWLMLGQMEDRLGHGSKAKEVYENALKHCPSCIPLWLSLANLEEKINGLSKSRAVLTMARKKNPATPELWLAAVRAELRHGNKKEADALLAKALQECPTSGILWAAAIEMVPRPQRKAKSSDAIKRCDHDPHVIAAVAKLFWHDRKVDKARSWLNRAVTLAPDIGDFWALYYKFELQHGNADTQKDVLQRCVAAEPKHGERWQAITKAVENSHLSIEALLKKAVLALGQEENPNAADP*