Information report for NF-YC12;OsNF-YC12
Gene Details
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Functional Descriptions
- NF-YB1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).
- NF-YC12 and bHLH144 maintain NF-YB1 stability from the degradation mediated by ubiquitin/26S proteasome, while NF-YB1 directly binds to the ‘G-box’ domain of Wx promoter and activates Wx transcription, hence to regulate rice grain quality.
- Knockout of NF-YC12 significantly decreased grain weight as well as altering starch and protein accumulation and starch granule formation.
- This study demonstrates a transcriptional regulatory network involving NF-YC12, which coordinates multiple pathways to regulate endosperm development and the accumulation of storage substances in rice seeds.
Functional Keywords
Literature and News
- NF-YB1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.) . DOI: 10.1111/pbi.13048 ; PMID: 30552799
- NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice . DOI: 10.1093/jxb/erz168 ; PMID: 31211389
- Transcription factor OsNF-YB9 regulates reproductive growth and development in rice . DOI: 10.1007/s00425-019-03268-2 ; PMID: 31482329
Gene Resources
- UniProt: Q8LMX6
- EMBL: AP014966, DP000086
- AlphaFoldDB: Q8LMX6
- EnsemblPlants: Os10t0191900-01
- Gramene: Os10t0191900-01
- KEGG: osa:4348238
- Orthologous matrix: EMSSICP
- InterPro: IPR007125, IPR009072, IPR050568
- PANTHER: PTHR10252, PTHR10252:SF143
- SUPFAM: SSF47113
- Gene3D: 1.10.20.10
- OrthoDB: Q8LMX6
- SWISS-MODEL: Q8LMX6
- Conserved Domain Database: cd22908
- eggNOG: KOG1657
Sequences
cDNA Sequence
- >LOC_Os10g11580.1
TCATCAATCATCCTATAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAATCCGCAGGCAACGAAGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTTCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCAATATTCCTGTTTGTCCTCCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCTATTGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAATTTCATGACAATACTAGGAATACAAAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCATGATATAATCAAGCTCTCATAAGTTGTATAGCTGATTTAGCAATACCTCGCAAGCTAGAAAGATTGTCTGTAATTGTTCATTTTATCATCATATTCAAATCTTTGTG
CDS Sequence
- >LOC_Os10g11580.1
ATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAATCCGCAGGCAACGAAGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTTCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCAATATTCCTGTTTGTCCTCCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCTATTGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGA
Protein Sequence
- >LOC_Os10g11580.1
MPIPEKDGVEDNQEDDTFSRLQLLAQQRHAMEKFWRMSQEQIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFLANVVHGHQALGSNIPEIGVSAWKRHKLDEMTSLCHPPQAVQVTDLANHPPNIPVCPPIGQSGTQHTTSTHVLMMQGESIHKASKEKSPLKEVMVPTNKVGMTNSSYGVPNGGGATSSKVVIDSPKGETAQVFSSQHACPSLEDNYVIPIPAGHGDSFRTLDEANIPQLHQEQKNFISQDAIVGENIPLNESLEKSKHKDEDLLFPDKDLPE*