Information report for SIP1;OsSUF4
Gene Details
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Functional Descriptions
- Together, our results show that the transcription factor SIP1 interacts with OxTrx1, allowing OsTrx1 to specifically target Ehd1, altering H3K4me3 levels, increasing Ehd1 expression and thereby promoting flowering.
- Mutations in SIP1 led to a late heading date under long-day and short-day conditions.
- SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.
- The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.
- Here, we show that the transcription factor OsSUF4 recognizes a specific 7-bp DNA element, broadly distributes throughout the rice genome, and recruits the H3K36 methyltransferase SDG725 to target a set of genes including the key florigen genes RFT1 and Hd3a to promote flowering in rice.
- Biochemical and structural analyses indicate that several positive residues within the zinc finger domain are vital for OsSUF4 function in planta.
Functional Keywords
Literature and News
- SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1 . DOI: 10.1111/nph.15122 ; PMID: 29611871
- The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment . DOI: 10.1038/s41467-019-10850-5 ; PMID: 31278262
- Transcriptional and post-transcriptional regulation of heading date in rice . DOI: 10.1111/nph.17158 ; PMID: 33341945
Gene Resources
- UniProt: B9G525
- EMBL: CM000146
- AlphaFoldDB: B9G525
- EnsemblPlants: Os09t0560900-02
- Gramene: Os09t0560900-02
- InterPro: IPR003656, IPR013087
- PANTHER: PTHR23215, PTHR23215:SF0
- PROSITE: PS00028, PS50808
- Gene3D: 3.30.160.60
- OrthoDB: B9G525
- SWISS-MODEL: B9G525
- Conserved Domain Database: cd20908
Sequences
cDNA Sequence
- >LOC_Os09g38790.3
GACACAAAAATCCATTGAACCCCACACGCCAGCCTCCCGATCCGACACCAAAGGAGAGAGCCGCCTCGCCTTCGTCTTCGTCTTCCCCCCGCCGCGCTCGTGCCCTCGCCTCGCCTCGCCTCGCCGAAACCCTAACCCTAGAATCGTCGATCGCCCGCGAGAGAGGAGGGGGAGGGGGACGAGGGGGAACCGCGCGTGATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCACTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAGACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAACCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAAAACAAATTGAACACATGTCTCGTAAATTGCCCCTATGCAATTCACTGACATATTCGCCTATCTGGGCGAGCATAGGAGTAGCGCCTACAGTCGGTGATTCCCCGATTCCTGTTCTCCATTTGTTTAGCTAGTGACTGGAGGTACTGTGTGCAGTCAAAGGAATATGTTGTTCTGACTTGGAAAGCTTTGAATGTATCTTTCCACCCGAGTGAAGATGTTAGTCTAGAACCCATTTTCCCATTGTCGCCTGAAGAAAATGTGATTTGTTGTCAACTCTGGAAATCTCATCATGAATTAGCAGAATCAGTTTCAGAGGCATGATGTGTATTCATTAATTTGATGGCACATGAGCGCCTACTAATAATAATTTATTGGTATTGATGCTAAACAA - >LOC_Os09g38790.1
GACACAAAAATCCATTGAACCCCACACGCCAGCCTCCCGATCCGACACCAAAGGAGAGAGCCGCCTCGCCTTCGTCTTCGTCTTCCCCCCGCCGCGCTCGTGCCCTCGCCTCGCCTCGCCTCGCCGAAACCCTAACCCTAGAATCGTCGATCGCCCGCGAGAGAGGAGGGGGAGGGGGACGAGGGGGAACCGCGCGTGATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCACTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAGACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAACCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAAAACAAATTGAACACATGTCTCGTAAATTGCCCCTATGCAATTCACTGACATATTCGCCTATCTGGGCGAGCATAGGAGTAGCGCCTACAGTCGGTGATTCCCCGATTCCTGTTCTCCATTTGTTTAGCTAGTGACTGGAGGTACTGTGTGCAGTCAAAGGAATATGTTGTTCTGACTTGGAAAGCTTTGAATGTATCTTTCCACCCGAGTGAAGATGTTAGTCTAGAACCCATTTTCCCATTGTCGCCTGAAGAAAATGTGATTTGTTGTCAACTCTGGAAATCTCATCATGAATTAGCAGAATCAGTTTCAGAGGCATGATGTGTATTCATTAATTTGATGGCACATGAGCGCCTACTAATAATAATTTATTGGTATTGATGCTAAACAA - >LOC_Os09g38790.2
GACACAAAAATCCATTGAACCCCACACGCCAGCCTCCCGATCCGACACCAAAGGAGAGAGCCGCCTCGCCTTCGTCTTCGTCTTCCCCCCGCCGCGCTCGTGCCCTCGCCTCGCCTCGCCTCGCCGAAACCCTAACCCTAGAATCGTCGATCGCCCGCGAGAGAGGAGGGGGAGGGGGACGAGGGGGAACCGCGCGTGATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCACTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAGACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAACCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAAAACAAATTGAACACATGTCTCGTAAATTGCCCCTATGCAATTCACTGACATATTCGCCTATCTGGGCGAGCATAGGAGTAGCGCCTACAGTCGGTGATTCCCCGATTCCTGTTCTCCATTTGTTTAGCTAGTGACTGGAGGTACTGTGTGCAGTCAAAGGAATATGTTGTTCTGACTTGGAAAGCTTTGAATGTATCTTTCCACCCGAGTGAAGATGTTAGTCTAGAACCCATTTTCCCATTGTCGCCTGAAGAAAATGTGATTTGTTGTCAACTCTGGAAATCTCATCATGAATTAGCAGAATCAGTTTCAGAGGCATGATGTGTATTCATTAATTTGATGGCACATGAGCGCCTACTAATAATAATTTATTGGTATTGATGCTAAACAA
CDS Sequence
- >LOC_Os09g38790.3
ATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCACTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAGACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAACCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAA - >LOC_Os09g38790.1
ATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCACTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAGACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAACCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAA - >LOC_Os09g38790.2
ATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGTCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTTGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCACTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAGACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAACCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGGCCCTGTAA
Protein Sequence
- >LOC_Os09g38790.3
MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNPAGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPAPPPQPWFTQPVVSVPQMASGLAPQQPLFPIQNMPAPMTSAPANLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDEAMSMEERRLSLPKYQVHDETSQMNSVDAAIDRRISESRLAGRMAL* - >LOC_Os09g38790.1
MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNPAGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPAPPPQPWFTQPVVSVPQMASGLAPQQPLFPIQNMPAPMTSAPANLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDEAMSMEERRLSLPKYQVHDETSQMNSVDAAIDRRISESRLAGRMAL* - >LOC_Os09g38790.2
MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNPAGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPAPPPQPWFTQPVVSVPQMASGLAPQQPLFPIQNMPAPMTSAPANLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDEAMSMEERRLSLPKYQVHDETSQMNSVDAAIDRRISESRLAGRMAL*