Gene Details:
- MSU gene ID: LOC_Os09g32080
- RAPdb gene ID: Os09g0494200
- Gene Symbol: bc15 OsCTL1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Mutation of BC15/OsCTL1 causes reduced cellulose content and mechanical strength without obvious alterations in plant growth.
- Investigation of the global expression profile of wild-type and bc15 plants, using Illumina RNA sequencing, further suggested a possible mechanism by which BC15/OsCTL1 mediates cellulose biosynthesis and cell wall remodeling.
- In this study, we report the isolation of a brittle culm mutant, bc15, and the map-based cloning of the BC15/OsCTL1 (for chitinase-like1) gene affected in the mutant.
Function-related keywords:
Literature:
- Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice . DOI: 10.1104/pp.112.195529 ; PMID: 22665444
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g32080.2
GACACACACAACGGCAACGTCTTACCAGCTCGGAGCTCTCTCGCTTGCTGCCTCTTCTCTTCTTCCTCCCGCCACCGACACCACCTCCACCAGCAGCTTCGCCTTCGCCGCGTCGGCATCTGCAGTTGCCACTTCGCTTTCTTCCACTCCCTCCTCCTCCTCGCTTACCTCACACTCCTCCCCCCCAATTTCATCCCCCACCCACCACCAGATCCCCCACCACCTGCCGCATTCTCCCCCCCAAGATCCAGATCGCCGGTCACCCCCACGAACTCGCTCGAGATCCAGAGAGAGAGAGAGAGGCAGTTTCTTGGTTGATTTTCGAGGATGAAGAGGAAGACTCGGAACAAGATAATCCTGACGACGCTGCTGGTGTCGGCGGCGGCGATCCTGATCGGCGGGACGGTGGCGCTGATCCTGACGGCGGGGACATGGAAGGTGAAGATGAAGGAGTCGCGCGAGAAGATCTGCGACAAGGGGTGGGAGTGCTCGGGTAGCAAGTACTGCTGCAACGACACCATCACCGACTTCTTCAAGGTGTACCAGTTCGAGAACCTCTTCTCCAAGCGCAACAGCCCCGTCGCCCACGCCGTCGGCTTCTGGGACTACCAGTCCTTCATCACCGCCGCCGCCCTCTTCGAGCCCCTCGGCTTCTGCACCACCGGCGGCAAGCAGATGCAGATGATGGAGCTCTGCGCCTTCCTCGGCCATGTCGGCTCCAAGACCTCATGTGGATTTGGTGTGGCGACCGGCGGGCCGACGGCGTGGGGGCTCTGCTACAACCACGAGATGAGCCCTAAGGAGGATTACTGCGACAAGACGAACCTGCAGTATCCCTGCGTCGAGGGCGCCGAGTACTACGGCCGCGGCGCCATCCCCGTCTTCTGGAACTACAACTATGGCGCGGCGGGCGACGGGATACACGAGGACCTGCTCCACCACCCGGAGTACCTGGAGCAGAACGCGACGATGGCGTTCATGGCGGCGATGTGGCGGTGGATGACGCCGATGAAGAAGAAGCAGCCGTCGGCGCACGACGTGTTCGTGGGCAACTGGAAGCCCACCAAGAACGACACGCTCGCCAAGCGCCTCCCCGGGTTCGGCGCCACCATGAACGTGCTCTACGGCGACCAGATCTGCGGCAAGGGCTACATCGACGACATGAACGTCATCATCTCGCACTACCAGTACTACCTCGACCTCATGGGCGTCGGCCGCGAGCACTCCGGCGACAACCGCGACTGCGCCGAGCAGGCCGCCTTCAACCCCTCCTACAAGAAGCCCGACGATCAGCAGCAACAAAGCTAGAACAGATCACCCCCAATTCCCCCCAATTCCACGATTAACGGATTCTTCATCAGTGTGAGGAGCTGTGGTTTGCATTGGTGTATTTCTGAGTAGCGGATTTTGAGGGAAGTGTCAACTGTGTGTGTGATGCCTATGGGATTTGGGAAATTTGTTGTAGCCCTTGTTGTACCATAGTGTACATTTTCATTCCATTTGATTTTTGTCACATATACATGTTTAAAGAGGAGGATTCAGGATAAACATACCATGATTTTGATGAGCTTGCTGTGTATCTGTTATTGAGGTGTGTGTAGCTGTTTAGCATGCATGCAATAGTTTTCATGCATCAGTGCGTGATAATGCTGTGTGTCATAATTTGGGCTGGGTAAAAATACTCAGTCCTCAGTTACTTCTCGCTATTGATCTTTCAGCTTTGATC - >LOC_Os09g32080.1
GACACACACAACGGCAACGTCTTACCAGCTCGGAGCTCTCTCGCTTGCTGCCTCTTCTCTTCTTCCTCCCGCCACCGACACCACCTCCACCAGCAGCTTCGCCTTCGCCGCGTCGGCATCTGCAGTTGCCACTTCGCTTTCTTCCACTCCCTCCTCCTCCTCGCTTACCTCACACTCCTCCCCCCCAATTTCATCCCCCACCCACCACCAGATCCCCCACCACCTGCCGCATTCTCCCCCCCAAGATCCAGATCGCCGGTCACCCCCACGAACTCGCTCGAGATCCAGAGAGAGAGAGAGAGGCAGTTTCTTGGTTGATTTTCGAGGATGAAGAGGAAGACTCGGAACAAGATAATCCTGACGACGCTGCTGGTGTCGGCGGCGGCGATCCTGATCGGCGGGACGGTGGCGCTGATCCTGACGGCGGGGACATGGAAGGTGAAGATGAAGGAGTCGCGCGAGAAGATCTGCGACAAGGGGTGGGAGTGCTCGGGTAGCAAGTACTGCTGCAACGACACCATCACCGACTTCTTCAAGGTGTACCAGTTCGAGAACCTCTTCTCCAAGCGCAACAGCCCCGTCGCCCACGCCGTCGGCTTCTGGGACTACCAGTCCTTCATCACCGCCGCCGCCCTCTTCGAGCCCCTCGGCTTCTGCACCACCGGCGGCAAGCAGATGCAGATGATGGAGCTCTGCGCCTTCCTCGGCCATGTCGGCTCCAAGACCTCATGTGGATTTGGTGTGGCGACCGGCGGGCCGACGGCGTGGGGGCTCTGCTACAACCACGAGATGAGCCCTAAGGAGGATTACTGCGACAAGACGAACCTGCAGTATCCCTGCGTCGAGGGCGCCGAGTACTACGGCCGCGGCGCCATCCCCGTCTTCTGGAACTACAACTATGGCGCGGCGGGCGACGGGATACACGAGGACCTGCTCCACCACCCGGAGTACCTGGAGCAGAACGCGACGATGGCGTTCATGGCGGCGATGTGGCGGTGGATGACGCCGATGAAGAAGAAGCAGCCGTCGGCGCACGACGTGTTCGTGGGCAACTGGAAGCCCACCAAGAACGACACGCTCGCCAAGCGCCTCCCCGGGTTCGGCGCCACCATGAACGTGCTCTACGGCGACCAGATCTGCGGCAAGGGCTACATCGACGACATGAACGTCATCATCTCGCACTACCAGTACTACCTCGACCTCATGGGCGTCGGCCGCGAGCACTCCGGCGACAACCGCGACTGCGCCGAGCAGGCCGCCTTCAACCCCTCCTACAAGAAGCCCGACGATCAGCAGCAACAAAGCTAGAACAGATCACCCCCAATTCCCCCCAATTCCACGATTAACGGATTCTTCATCAGTGTGAGGAGCTGTGGTTTGCATTGGTGTATTTCTGAGTAGCGGATTTTGAGGGAAGTGTCAACTGTGTGTGTGATGCCTATGGGATTTGGGAAATTTGTTGTAGCCCTTGTTGTACCATAGTGTACATTTTCATTCCATTTGATTTTTGTCACATATACATGTTTAAAGAGGAGGATTCAGGATAAACATACCATGATTTTGATGAGCTTGCTGTGTATCTGTTATTGAGGTGTGTGTAGCTGTTTAGCATGCATGCAATAGTTTTCATGCATCAGTGCGTGATAATGCTGTGTGTCATAATTTGGGCTGGGTAAAAATACTCAGTCCTCAGTTACTTCTCGCTATTGATCTTTCAGCTTTGATC
CDS Sequence
- >LOC_Os09g32080.2
ATGAAGAGGAAGACTCGGAACAAGATAATCCTGACGACGCTGCTGGTGTCGGCGGCGGCGATCCTGATCGGCGGGACGGTGGCGCTGATCCTGACGGCGGGGACATGGAAGGTGAAGATGAAGGAGTCGCGCGAGAAGATCTGCGACAAGGGGTGGGAGTGCTCGGGTAGCAAGTACTGCTGCAACGACACCATCACCGACTTCTTCAAGGTGTACCAGTTCGAGAACCTCTTCTCCAAGCGCAACAGCCCCGTCGCCCACGCCGTCGGCTTCTGGGACTACCAGTCCTTCATCACCGCCGCCGCCCTCTTCGAGCCCCTCGGCTTCTGCACCACCGGCGGCAAGCAGATGCAGATGATGGAGCTCTGCGCCTTCCTCGGCCATGTCGGCTCCAAGACCTCATGTGGATTTGGTGTGGCGACCGGCGGGCCGACGGCGTGGGGGCTCTGCTACAACCACGAGATGAGCCCTAAGGAGGATTACTGCGACAAGACGAACCTGCAGTATCCCTGCGTCGAGGGCGCCGAGTACTACGGCCGCGGCGCCATCCCCGTCTTCTGGAACTACAACTATGGCGCGGCGGGCGACGGGATACACGAGGACCTGCTCCACCACCCGGAGTACCTGGAGCAGAACGCGACGATGGCGTTCATGGCGGCGATGTGGCGGTGGATGACGCCGATGAAGAAGAAGCAGCCGTCGGCGCACGACGTGTTCGTGGGCAACTGGAAGCCCACCAAGAACGACACGCTCGCCAAGCGCCTCCCCGGGTTCGGCGCCACCATGAACGTGCTCTACGGCGACCAGATCTGCGGCAAGGGCTACATCGACGACATGAACGTCATCATCTCGCACTACCAGTACTACCTCGACCTCATGGGCGTCGGCCGCGAGCACTCCGGCGACAACCGCGACTGCGCCGAGCAGGCCGCCTTCAACCCCTCCTACAAGAAGCCCGACGATCAGCAGCAACAAAGCTAG - >LOC_Os09g32080.1
ATGAAGAGGAAGACTCGGAACAAGATAATCCTGACGACGCTGCTGGTGTCGGCGGCGGCGATCCTGATCGGCGGGACGGTGGCGCTGATCCTGACGGCGGGGACATGGAAGGTGAAGATGAAGGAGTCGCGCGAGAAGATCTGCGACAAGGGGTGGGAGTGCTCGGGTAGCAAGTACTGCTGCAACGACACCATCACCGACTTCTTCAAGGTGTACCAGTTCGAGAACCTCTTCTCCAAGCGCAACAGCCCCGTCGCCCACGCCGTCGGCTTCTGGGACTACCAGTCCTTCATCACCGCCGCCGCCCTCTTCGAGCCCCTCGGCTTCTGCACCACCGGCGGCAAGCAGATGCAGATGATGGAGCTCTGCGCCTTCCTCGGCCATGTCGGCTCCAAGACCTCATGTGGATTTGGTGTGGCGACCGGCGGGCCGACGGCGTGGGGGCTCTGCTACAACCACGAGATGAGCCCTAAGGAGGATTACTGCGACAAGACGAACCTGCAGTATCCCTGCGTCGAGGGCGCCGAGTACTACGGCCGCGGCGCCATCCCCGTCTTCTGGAACTACAACTATGGCGCGGCGGGCGACGGGATACACGAGGACCTGCTCCACCACCCGGAGTACCTGGAGCAGAACGCGACGATGGCGTTCATGGCGGCGATGTGGCGGTGGATGACGCCGATGAAGAAGAAGCAGCCGTCGGCGCACGACGTGTTCGTGGGCAACTGGAAGCCCACCAAGAACGACACGCTCGCCAAGCGCCTCCCCGGGTTCGGCGCCACCATGAACGTGCTCTACGGCGACCAGATCTGCGGCAAGGGCTACATCGACGACATGAACGTCATCATCTCGCACTACCAGTACTACCTCGACCTCATGGGCGTCGGCCGCGAGCACTCCGGCGACAACCGCGACTGCGCCGAGCAGGCCGCCTTCAACCCCTCCTACAAGAAGCCCGACGATCAGCAGCAACAAAGCTAG
Protein Sequence
- >LOC_Os09g32080.2
MKRKTRNKIILTTLLVSAAAILIGGTVALILTAGTWKVKMKESREKICDKGWECSGSKYCCNDTITDFFKVYQFENLFSKRNSPVAHAVGFWDYQSFITAAALFEPLGFCTTGGKQMQMMELCAFLGHVGSKTSCGFGVATGGPTAWGLCYNHEMSPKEDYCDKTNLQYPCVEGAEYYGRGAIPVFWNYNYGAAGDGIHEDLLHHPEYLEQNATMAFMAAMWRWMTPMKKKQPSAHDVFVGNWKPTKNDTLAKRLPGFGATMNVLYGDQICGKGYIDDMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAAFNPSYKKPDDQQQQS* - >LOC_Os09g32080.1
MKRKTRNKIILTTLLVSAAAILIGGTVALILTAGTWKVKMKESREKICDKGWECSGSKYCCNDTITDFFKVYQFENLFSKRNSPVAHAVGFWDYQSFITAAALFEPLGFCTTGGKQMQMMELCAFLGHVGSKTSCGFGVATGGPTAWGLCYNHEMSPKEDYCDKTNLQYPCVEGAEYYGRGAIPVFWNYNYGAAGDGIHEDLLHHPEYLEQNATMAFMAAMWRWMTPMKKKQPSAHDVFVGNWKPTKNDTLAKRLPGFGATMNVLYGDQICGKGYIDDMNVIISHYQYYLDLMGVGREHSGDNRDCAEQAAFNPSYKKPDDQQQQS*