Gene Details:
- MSU gene ID: LOC_Os09g28300
- RAPdb gene ID: Os09g0456100
- Gene Symbol: LP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Sequencing analysis of LP1 in two parents and 103 rice accessions indicated that SNP1 is associated with panicle length.
- The LP1 allele of Xiushui79 leads to reduced panicle length, whereas the allele of C-bao relieves the suppression of panicle length.
- LP1 and the elite alleles can be used to improve panicle length in rice.
Function-related keywords:
Literature:
- Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis . DOI: 10.3389/fpls.2016.00596 ; PMID: 27200064
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g28300.1
GGCTCGCGTCAGACAGACTCCCTCCTCTCCTCGAGATGCTGTACTTGCCATCGGTCCATCACCCTTCCATCCCGCCACGTTGCGATCCCCTCGGCCACTTCTATTAAACGCCAACGTACTCCTCATCACGCCTCCAAACCCGCCGCTTTGATTGTACTTGTGCTTTGCTGTTAAAGAGCTCGCCGGCGTGAGTGGTGGCGGGTAGAAGTTATATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAGTGTCATGTAGTTTAAGAAGGAACAGGACTTAAAGTAATTCTTCGTGTTATCAACACGCTCGTGTTGACTTAGTGAAGTTCAGAGATTTACAGAATAAAGATGATCCAGCAGATGGAAATTATCCCCCCTTGAATTTTGACAAGATGCTGCTGCAACAATGGGGGACCATGCATTATCATGATATAGATTTCTACAGTTCTGCTTTGTGTTAGTTTCGATTCTGCCATGGGGGGACAAGAGAAAATGGTGCCACGAAGGAAAGGTGAAATTCTTCTGCATACATCCCATGTGCCTGATTGATATCTTAGCACAATGATAATTGATAAGGTCCTCCTCTATCATTCATTACCCATTACCAACATTCTAGATGCTATGAGTTTGTGTGCGATGAAAACAAAGCAGATATGTATCATTTGCACCACAATTCCAACGGATAGATAAGAAGGGAATGTTTCAGTCAGAGGGAATACAGTGCCTTACTGTGATTCATGCTGGAAAACTCTACTGGATTGTGAAAGGGAACCAGGTGGAATGCAATAGATTTAGCTAGCGTATGCTACATTTGCATACACAGTTACAATAGCATGTGTTGGAGAAAAATATAGGAATACAGGAAAATAGAGATTCTGTTTGAATTTCATGGCAATTTGACAAGCTCTTCGCAGAACAACTCTCCCATTTCTGTAATGAGCTGTTTCTTGTAATTCCTATTGCAACACATAGGCGTTACTGAATGTTGATAAATGATATTGCCATCGCAATTTTTTTTTAGAAAAATAATCGCTATCGCTGCTCCAACTTCAAAATAAAAGTACTCCGGGATTCTTTAGATC - >LOC_Os09g28300.2
GGCTCGCGTCAGACAGACTCCCTCCTCTCCTCGAGATGCTGTACTTGCCATCGGTCCATCACCCTTCCATCCCGCCACGTTGCGATCCCCTCGGCCACTTCTATTAAACGCCAACGTACTCCTCATCACGCCTCCAAACCCGCCGCTTTGATTGTACTTGTGCTTTGCTGTTAAAGAGCTCGCCGGCGTGAGTGGTGGCGGGTAGAAGTTATATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAGTGTCATGTAGTTTAAGAAGGAACAGGACTTAAAGTAATTCTTCGTGTTATCAACACGCTCGTGTTGACTTAGTGAAGTTCAGAGATTTACAGAATAAAGATGATCCAGCAGATGGAAATTATCCCCCCTTGAATTTTGACAAGATGCTGCTGCAACAATGGGGGACCATGCATTATCATGATATAGATTTCTACAGTTCTGCTTTGTGTTAGTTTCGATTCTGCCATGGGGGGACAAGAGAAAATGGTGCCACGAAGGAAAGGTGAAATTCTTCTGCATACATCCCATGTGCCTGATTGATATCTTAGCACAATGATAATTGATAAGGTCCTCCTCTATCATTCATTACCCATTACCAACATTCTAGATGCTATGAGTTTGTGTGCGATGAAAACAAAGCAGATATGTATCATTTGCACCACAATTCCAACGGATAGATAAGAAGGGAATGTTTCAGTCAGAGGGAATACAGTGCCTTACTGTGATTCATGCTGGAAAACTCTACTGGATTGTGAAAGGGAACCAGGTGGAATGCAATAGATTTAGCTAGCGTATGCTACATTTGCATACACAGTTACAATAGCATGTGTTGGAGAAAAATATAGGAATACAGGAAAATAGAGATTCTGTTTGAATTTCATGGCAATTTGACAAGCTCTTCGCAGAACAACTCTCCCATTTCTGTAATGAGCTGTTTCTTGTAATTCCTATTGCAACACATAGGCGTTACTGAATGTTGATAAATGATATTGCCATCGCAATTTTTTTTTAGAAAAATAATCGCTATCGCTGCTCCAACTTCAAAATAAAAGTACTCCGGGATTCTTTAGATC
CDS Sequence
- >LOC_Os09g28300.1
ATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAG - >LOC_Os09g28300.2
ATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAG
Protein Sequence
- >LOC_Os09g28300.1
MERMRCVGGGDTPLGFRGVVEEELEEEVAAVSASGRPMQRQRRRRRRWGEDADDGYSASSTGGGGSSGCGSFGCDSPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEVLCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPGFNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRPKSKSGPLGPPGKFGGQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASIITPIILRKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCFSDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVIDVKKKTVESKSSSWELTEAKSISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHAF* - >LOC_Os09g28300.2
MERMRCVGGGDTPLGFRGVVEEELEEEVAAVSASGRPMQRQRRRRRRWGEDADDGYSASSTGGGGSSGCGSFGCDSPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEVLCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPGFNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRPKSKSGPLGPPGKFGGQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASIITPIILRKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCFSDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVIDVKKKTVESKSSSWELTEAKSISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHAF*