Information report for LP1
Gene Details
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Functional Descriptions
- Sequencing analysis of LP1 in two parents and 103 rice accessions indicated that SNP1 is associated with panicle length.
- The LP1 allele of Xiushui79 leads to reduced panicle length, whereas the allele of C-bao relieves the suppression of panicle length.
- LP1 and the elite alleles can be used to improve panicle length in rice.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q67U79
- EMBL: AP005655, AP006057, AP008215
- AlphaFoldDB: Q67U79
- EnsemblPlants: Os09t0456100-01
- Gramene: Os09t0456100-01
- KEGG: dosa:Os09g0456100, osa:4347256
Sequences
cDNA Sequence
- >LOC_Os09g28300.1
GGCTCGCGTCAGACAGACTCCCTCCTCTCCTCGAGATGCTGTACTTGCCATCGGTCCATCACCCTTCCATCCCGCCACGTTGCGATCCCCTCGGCCACTTCTATTAAACGCCAACGTACTCCTCATCACGCCTCCAAACCCGCCGCTTTGATTGTACTTGTGCTTTGCTGTTAAAGAGCTCGCCGGCGTGAGTGGTGGCGGGTAGAAGTTATATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAGTGTCATGTAGTTTAAGAAGGAACAGGACTTAAAGTAATTCTTCGTGTTATCAACACGCTCGTGTTGACTTAGTGAAGTTCAGAGATTTACAGAATAAAGATGATCCAGCAGATGGAAATTATCCCCCCTTGAATTTTGACAAGATGCTGCTGCAACAATGGGGGACCATGCATTATCATGATATAGATTTCTACAGTTCTGCTTTGTGTTAGTTTCGATTCTGCCATGGGGGGACAAGAGAAAATGGTGCCACGAAGGAAAGGTGAAATTCTTCTGCATACATCCCATGTGCCTGATTGATATCTTAGCACAATGATAATTGATAAGGTCCTCCTCTATCATTCATTACCCATTACCAACATTCTAGATGCTATGAGTTTGTGTGCGATGAAAACAAAGCAGATATGTATCATTTGCACCACAATTCCAACGGATAGATAAGAAGGGAATGTTTCAGTCAGAGGGAATACAGTGCCTTACTGTGATTCATGCTGGAAAACTCTACTGGATTGTGAAAGGGAACCAGGTGGAATGCAATAGATTTAGCTAGCGTATGCTACATTTGCATACACAGTTACAATAGCATGTGTTGGAGAAAAATATAGGAATACAGGAAAATAGAGATTCTGTTTGAATTTCATGGCAATTTGACAAGCTCTTCGCAGAACAACTCTCCCATTTCTGTAATGAGCTGTTTCTTGTAATTCCTATTGCAACACATAGGCGTTACTGAATGTTGATAAATGATATTGCCATCGCAATTTTTTTTTAGAAAAATAATCGCTATCGCTGCTCCAACTTCAAAATAAAAGTACTCCGGGATTCTTTAGATC - >LOC_Os09g28300.2
GGCTCGCGTCAGACAGACTCCCTCCTCTCCTCGAGATGCTGTACTTGCCATCGGTCCATCACCCTTCCATCCCGCCACGTTGCGATCCCCTCGGCCACTTCTATTAAACGCCAACGTACTCCTCATCACGCCTCCAAACCCGCCGCTTTGATTGTACTTGTGCTTTGCTGTTAAAGAGCTCGCCGGCGTGAGTGGTGGCGGGTAGAAGTTATATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAGTGTCATGTAGTTTAAGAAGGAACAGGACTTAAAGTAATTCTTCGTGTTATCAACACGCTCGTGTTGACTTAGTGAAGTTCAGAGATTTACAGAATAAAGATGATCCAGCAGATGGAAATTATCCCCCCTTGAATTTTGACAAGATGCTGCTGCAACAATGGGGGACCATGCATTATCATGATATAGATTTCTACAGTTCTGCTTTGTGTTAGTTTCGATTCTGCCATGGGGGGACAAGAGAAAATGGTGCCACGAAGGAAAGGTGAAATTCTTCTGCATACATCCCATGTGCCTGATTGATATCTTAGCACAATGATAATTGATAAGGTCCTCCTCTATCATTCATTACCCATTACCAACATTCTAGATGCTATGAGTTTGTGTGCGATGAAAACAAAGCAGATATGTATCATTTGCACCACAATTCCAACGGATAGATAAGAAGGGAATGTTTCAGTCAGAGGGAATACAGTGCCTTACTGTGATTCATGCTGGAAAACTCTACTGGATTGTGAAAGGGAACCAGGTGGAATGCAATAGATTTAGCTAGCGTATGCTACATTTGCATACACAGTTACAATAGCATGTGTTGGAGAAAAATATAGGAATACAGGAAAATAGAGATTCTGTTTGAATTTCATGGCAATTTGACAAGCTCTTCGCAGAACAACTCTCCCATTTCTGTAATGAGCTGTTTCTTGTAATTCCTATTGCAACACATAGGCGTTACTGAATGTTGATAAATGATATTGCCATCGCAATTTTTTTTTAGAAAAATAATCGCTATCGCTGCTCCAACTTCAAAATAAAAGTACTCCGGGATTCTTTAGATC
CDS Sequence
- >LOC_Os09g28300.1
ATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAG - >LOC_Os09g28300.2
ATGGAGAGAATGCGGTGTGTTGGTGGTGGTGACACCCCGTTGGGGTTTCGGGGCGTCGTGGAGGAGGAGCTAGAGGAGGAGGTGGCGGCGGTGTCAGCGTCGGGGAGGCCAATGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGGGAGAGGATGCCGACGATGGCTACTCGGCGAGCTCGACTGGCGGCGGCGGGAGCAGCGGATGCGGCTCCTTCGGCTGTGACTCGCCTTTGGCTGGGTTCGTGCGTGCTGATGGCGACCCGGACACAGATCTGGAGACAGATGGGGTGGCCACTCCATCCTCCAATGCCTCTGCAGCATTCGCCGAGCCACACGACGAGGAGGAGGGGGACGAGGTGTTGTGTGGGGTGGTGGAAGGGGACTGGGCACAGCTGCAAGAACCAACCAAGAGTCCGGCAGACCGTACCACCGGAGAATGCCTGTACCAGCGGCGCCGGTCAGAAGCTGTTCTTTTGCAGGGTAGGAAGGGGTTGAAGCAACGGCCAGCCTCTCTGGACTTTGGCAGCGGCAGCCCCGGGTTCAATGGAGCCCCTCTTTCTCCGGGCTTTGTGGTTGGGGGTGTGGGTTTGATGAACAAGGGTCTTGTGTCATCATCATTCATCAGATCAGACGTTTTTCCTAGTCCCAGGACACCGAACTATCGGCGGCATCGTTCATCAGTATTTGGTTACCAAAAGGGGTGGAGCTCTGAGAGAGTACCGCTTGCTTCCAAAGGTAACAGGAGGTACCCAGGCAGCAGCATGGCATTTCCCTTCAGCAATGGGAGGACATTGCCCTCCAAATGGGAGGATGCAGAGAGATGGATCTTCAGTCCGAATTCGAGTGACGTGCTCGAGAAGACTTCATTTGCTCCTGCTCGGCGACCAAAGTCCAAAAGTGGTCCATTAGGGCCTCCTGGAAAATTTGGTGGACAATACTCATCTGTGTCATTGCTTGACAATGGGAGAGTTGGACATTTGACAGCAAACTCGCCTTTCTTGGCTGGAGTACTGATACCAGAACATTATTGTGGAGAGAAAGATAACATTGGGAGGTATATGAGCAGAACAGCTGGTGAGGAGGCCAGCATTGGCATTGGAGGCAAGTCTTGTCTGGCAAATGGTGGGTCTCATGCTACTCAATATAACAGAGTTCGTCGACGACTGGATACTGCGATTGAGTCATCACCTTCATTGCCTAGCACCCAAGCGTCTGTACAAGATGAACAGGTTGGAATCACAGAAGAGTCAGCCTCCATTATCACCCCTATAATTTTGCGGAAGGATGCGGCAACTCAAACAAGCCCAAATCTAAGTCGGTCATCTTCGCCCAGTGTCAGTACTCCATTTATCCATTTGCTTACGACACACCAAGTCAGAGAAAAGGAGAATTGTTTCTCTGATGTTATCAGGGATGTGCACATGGACGATCGAGTGACTCTTACCAGGTGGTCCAAGAAACATGTTACACGAGCATCTAGCAAGAACTCAACAAATGTTATAGATGTGAAGAAAAAGACAGTGGAGTCTAAGTCTTCTTCCTGGGAATTAACAGAAGCAAAATCCATATCAAAGGTTGAGCGAGAGCAAGAAAAAATTACTGCTTGGGAACACCTCCAAAAAGCCAAGGCTGAGGCAGCAATCCAAAAGTTAGTGATGAAAATCGAGAAAAAGAGATCATCTTCACTGGACAAGATTTGGAACACCCTCAGGTCTGCACAAAGAAGAGCACAGGTAATGCGTGAAACTGCAGCAGCAAACCAGGATGAGCAATCTTCCGGGAAGGCTAAAAGGACATCACACCTTAATAAGAACGGCCAGATCAGCTCTCTGAGTGGCTGCTTCACTTGCCATGCCTTCTAG
Protein Sequence
- >LOC_Os09g28300.1
MERMRCVGGGDTPLGFRGVVEEELEEEVAAVSASGRPMQRQRRRRRRWGEDADDGYSASSTGGGGSSGCGSFGCDSPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEVLCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPGFNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRPKSKSGPLGPPGKFGGQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASIITPIILRKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCFSDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVIDVKKKTVESKSSSWELTEAKSISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHAF* - >LOC_Os09g28300.2
MERMRCVGGGDTPLGFRGVVEEELEEEVAAVSASGRPMQRQRRRRRRWGEDADDGYSASSTGGGGSSGCGSFGCDSPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEVLCGVVEGDWAQLQEPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPGFNGAPLSPGFVVGGVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRPKSKSGPLGPPGKFGGQYSSVSLLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQDEQVGITEESASIITPIILRKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCFSDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVIDVKKKTVESKSSSWELTEAKSISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHAF*