Gene Details:

Functional Descriptions:

  • In the previous study, we identified a cold-tolerant QTL at the seedling stage, qCTS-9 which could be detected under different cold environments using a recombinant inbred line (RIL) population derived from a cold-tolerant variety Lijiangxintuanheigu (LTH) and a cold-sensitive variety Shanhuangzhan 2 (SHZ-2).
  • Identification of the functional gene underlying qCTS-9 and development of the gene-specific marker will facilitate molecular breeding for cold tolerance at the seedling stage in rice through transgenic approach and marker-assisted selection (MAS).

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os09g24440.1
    ATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTTCAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTAGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCTGATGATCAAGCTGTTAATGGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATGGGAACTGATGAGAAGGAGAAGGAGAAGGAGAAGGAGGATGAGAATGAGGAGGAGAAGTTGGAGGAGGAGGAGAAGAAGGATAAGGAGGAGAAGTTGGAGGAGAAGGAGAAGGAGAATGAAGAGGAAAATGGAAATGAGAAGGACAAGGAAAATGATAATGAAATTGAAAAGGTGAAGAACACAAAACTGGTTCACATAGATTATATTTTGGAGAAGGCTGAAACTGGACTTTACTTCACTGGCAACATCTTACATAGTAACAATCAAATAAGGCGTGCACACTGCTGGTTTCCTTGCATTGATAGTGCAACACAGCGCTGTCCATTTGACCTAGAGTTCACAGTTAGCACGAATCTAGTTGCTGTCAGTAACGGTGACTTGCTTTACCAGGTCTTAAGCAAGGAAGATCCTCCAAGAAAAACATATGTGTATAAATTGAGCACTCCAGTTAGTGCACAGTGGATATCTTTGGTTGTTGGTCCATTTGAAGTTCTTCCTGACAGGAATGACATAAGTGTATCACACATGTGCTTATCTCAGAGTTTATCAAAGCTTGAAAATACCATCTCATTTTTCCACAGTGTCTACAGCTGTTATGAAGATTATCTTGCTGCATCATTTCCTTTTGGACTATACAAACAGGTTTTTCTTCCACCTGAAATGATAGTATCACCAACAAGCTTAGGAGCTTCCACTTGCATCTTCAATTCAGATATCTTACACGACGAAAAGGTTATAGATCAGATAATTGACACGAGAATCAAAGTAGCATATGCTCTTGCAAGGCAATGGTTTGGCATATACACAAATGCAGAGGAGGCAACCGATGAGTGGTTATTGGATGGTTTGGCTGGTTTTCTCACTGAGCATTTTGTCAAGCGTTATCTTGGCAATAATGAGGCACGATATAGGCGTTTCAAGGATGTTGCTGCTGATTTGACCATATTTACTTTGCTTTTGAAACCAGTGCACGAGAGTTATGTTGCACACAGTTTTGGTGTTGATTCACATATTAACTTGTCATTCACCTTCCAACCAAATTCACTGGCAAATTATGTGTTTGCTTCTTGTCTTGCATTCATTCACCTTAATCTTAACGGTTGGTGTCGGGCGGCCAATTGCATTGTGTGTGAGTTTGATGTCAGTGGTGCAACTGCTTTGAGCTCTCCTTCAGCTTCAAGTGATTTATTTGGAACTCAAACAATCGGTTCATATGGGAAAATTCGTTCTTTGAAGGCAGTATCTGTTCTTCAAATGTTGGAGAAACAGATGGGGCCAGACTCTTTTCGGAAGATTCTGCAGATGATAGTTGCTCCAACTCGTGCCTCAAGAACACTAAGTACAAAAGAGTTCAGGCATCTTGCAAACAAGGTCGGTAATCTTGAACGGCCATTCCTGAAAGAATTCTTCCCAAGGTGGGTTGAATCTTCTGGATGCCCAGTTATGAGATTGGGAATCTCCTATAGCAAGAGGAGAAACTTGGTTGAATTAGCTGTTTCACGTGGTTGCACCACAAAAGTTGATCCTGGTCCTGATATTCGCACGAATGGTGATTCTCGAGAAGGTGATACTGGATGGCCAGGAATGATGAGCGTACGTGTCCATGAAACTGATGGAGTGTACGATCATCCAATTGTACCCATGGCTGGTGAAGCTTTGCAGGTGGTGGAAATACAATGTCATTCCAAAGTAGCAGCAAAGCGCTTTCAGAAAACTAAAAAAGGCTCAAAGCCTGATGGTTCTGATGAAAACATAGATGCTTCAAATCAAGATAACCGTGCGAGTATGGATGCACCTTTACTGTGGATCAGAGTGGACCCAGAAATGGAGTATCTCGCTGAGATACATTTTCACCAGCCTGTGCAGATGTGGATCAATCAATTGGAAAAGGACAAAGATGTCATTTCACAATCACAAGCAATATCTGTACTGGAGAAATCACCTCAACTCACTTTTGCTGTGACTAATGCCCTCAATAATTTCTTAAATGATACAAAGGCATTTTGGAGAGTTAGAGTTGAAGCAGCATATGCTTTAGCTGTAACTGCATCAGAGGGCACAGAACTAACTGGACTGCTTCATCTGGTTAAGTTCTATAAAAGCCGCCGATTTGATGCAGATATTGGATTACCCAGGCCGAATGACTTCCATGATATTCCGGAGTACTTTGTTCTTGAGGCAATTCCTCATGCAGTAGCTCTTGTTAGATCAGCAGACAAGAGCAGCCCAAAAGAAGCCATTGAATTTATCCTTCAGCTTCTAAAGTATAATGATAACAACGGAAATGTATACTCTGATGTCTACTGGCTATCTGCAATGGTGCAGGCGATAGGTGAATTAGAATTTGGCCAGCAGGGTGTAGGTCTATTGTCGTCTCTTCTCAAGCGCATTGATCGGCTCCTGCAATTTGATAACTTTATGCCTGGATACAATGGGGTTTTGACTGTCAGCTGCATTCGCACCCTTGCACGTATTGCACAGAGGGTGTCATCTTCCATTTGCCTTGATCGCGTCTGTGAACTAATTGTGCCCTATCGCAACATGGACAAACCATGGAAAGTTCGAATGGAAGCTGGCAGGGTTCTTATTGATCTCGAGTTTCACCATAAAGGACTTGATGCAGCTCTTTTATTATTCTTGAAATATGCTAATGAAGAAAGATCTTTGAGAGTTGGCCTCCTTTGCCTGCTTGCTGGCAAAAAGGCCTACAACAATGTATATCTTCGACATAATGTGTTCTGCATATTGCAAATTGCTGCTGGAAGGTCTCCAACACTGCATGGAGTTCCGAAGGTTGTCACTCCACCTCAAGTTGTCCTGGAGATATCTAGTGATCAGCACACTAAAGCTGATTCCTCAGTTCCTCAACAATCAAGGCCTCAAGAACCTTCCACTAGCACTCCTAGTGTCCGTGAAGTCTTACCTACCTCTGGACCCTTAAAAGATGCGGATAATATATCTAACTGCAGTGAGAGAAGGAATGTTATTTTTATACCCACAAAAGATGCGGATAATATATCTAACTGCAGTGAGAGAAGGAATGTTATTTCTATACCCACAAAAGATGCGGATAATATATCTAACTGCAGTGAGAGAAGGAATGTTGTCAAAATAAGGGTTAAACGTGCTTCATCATCCAGTAAAGCAGATGATGCTGATCACAGAGATCATTCACATGGTAGAAATGAAAATGAAGCAGGTCCATGTAGCTCTATGTCAGTGGATGCACCTATGACTGAAGCACCAGAACCAGTAAATGTAAGTAATCATAACATCGAGGAGCAAAACTCATGCCATGATAGGGAACAAAACTCTTGCCACGATAGGGAATCAAGGATGTCAGCAAGCATTGGCAATGTCAAACTAATGGACAAGCATGAAGTATCCAAGGAGCTACAGTGCACAGCCGATTCCAGGCTAGATGCTCTCCCCAAGGATCACTTCTCTCCCGTTGTTAATGGACAGGAAGTCCTAGACAAGCCACGGAGTCAGCTAGAAGTAGTCTCCACAAGCTATGATGGAAATCAAGCCCCAGACTCCATGAATGGATTGGAAACGAAGGAGAAGAAGAAGGACAAGAAAGACAAAAAGCGGCATCGAGATAAGAAAGATGATCCTGAGTATCTGGAGAAAAAACGGCTTAAGAAAGAGAAGAAAAGGATGGAGAAAGAAAAAGGCAAAAAGCAGAAGGAAGGTGAAGGGGTTTCTTCTTCCGAACAGAAGAACACAGCGAAACCTTCAGACTCGCAAGGAACCTCATCGGCAAGGCCACCAGCTCCAATGCGAATTCCTGAACCCAAGATATCAAATGTGGGTACGCCAGTAGATACTACACGGACATTGACAACTACTAAGATTAGGATCAAAGTCAAGCCTCTGCAAAGATAA
CDS Sequence
  • >LOC_Os09g24440.1
    ATGGCGAAGGCGAGGAAGCAGAAGGGCGAAGAGCAGAAGCCCGACGGCGGCGGGGCTGGCGGCGGGGGAGGGGGCGCCACCGTGCTCCACCAGAAGCTGTGCCTCTCCATCGACATGGAGAACCGGCTGATCTATGGGTACACTGAGATAAAAGTTCAAGCTGAAAATGATACTTTTGCTCTGCATGCTGACAACATGACGATTAGGAACATATTAGTGGATGGTCAAGCTGCTGAGTTTGAGTATTCTCCTCAGTGGAAAAATGCTGGTGATCAACAGAGTTGGTCTTCAGTATCATGTTCGAAGACTGCTGCTGATGCTGCATGCTCAGTATATATCTCTTCTCTAAATAGTGAAGCTGCACCTAATCTCATCATCTCGTCAGAGAGATCAAGCAAGGCAATAACTGAGCCACAGTACGAAGAAAATGGTGAAAACCACGAAGAAAATGGTGAAAAACATGAAGAAAATGGTGAAAAACAAAATGAAAATGGTGAAAAATGTGAAGAAAATGGTGGGAAACCTGCTCAAATATCTGATGATCAAGCTGTTAATGGCTGCAACGGTTCTGCTGATAAGAAGGACAAAGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTGAGAAGGACAATGAAAAAGAAAAGGAGGACAAGGAAGAGGAAACTAAGAAGGACAATGAAAAAGAAAAGGAGCAGCTAATGGGAACTGATGAGAAGGAGAAGGAGAAGGAGAAGGAGGATGAGAATGAGGAGGAGAAGTTGGAGGAGGAGGAGAAGAAGGATAAGGAGGAGAAGTTGGAGGAGAAGGAGAAGGAGAATGAAGAGGAAAATGGAAATGAGAAGGACAAGGAAAATGATAATGAAATTGAAAAGGTGAAGAACACAAAACTGGTTCACATAGATTATATTTTGGAGAAGGCTGAAACTGGACTTTACTTCACTGGCAACATCTTACATAGTAACAATCAAATAAGGCGTGCACACTGCTGGTTTCCTTGCATTGATAGTGCAACACAGCGCTGTCCATTTGACCTAGAGTTCACAGTTAGCACGAATCTAGTTGCTGTCAGTAACGGTGACTTGCTTTACCAGGTCTTAAGCAAGGAAGATCCTCCAAGAAAAACATATGTGTATAAATTGAGCACTCCAGTTAGTGCACAGTGGATATCTTTGGTTGTTGGTCCATTTGAAGTTCTTCCTGACAGGAATGACATAAGTGTATCACACATGTGCTTATCTCAGAGTTTATCAAAGCTTGAAAATACCATCTCATTTTTCCACAGTGTCTACAGCTGTTATGAAGATTATCTTGCTGCATCATTTCCTTTTGGACTATACAAACAGGTTTTTCTTCCACCTGAAATGATAGTATCACCAACAAGCTTAGGAGCTTCCACTTGCATCTTCAATTCAGATATCTTACACGACGAAAAGGTTATAGATCAGATAATTGACACGAGAATCAAAGTAGCATATGCTCTTGCAAGGCAATGGTTTGGCATATACACAAATGCAGAGGAGGCAACCGATGAGTGGTTATTGGATGGTTTGGCTGGTTTTCTCACTGAGCATTTTGTCAAGCGTTATCTTGGCAATAATGAGGCACGATATAGGCGTTTCAAGGATGTTGCTGCTGATTTGACCATATTTACTTTGCTTTTGAAACCAGTGCACGAGAGTTATGTTGCACACAGTTTTGGTGTTGATTCACATATTAACTTGTCATTCACCTTCCAACCAAATTCACTGGCAAATTATGTGTTTGCTTCTTGTCTTGCATTCATTCACCTTAATCTTAACGGTTGGTGTCGGGCGGCCAATTGCATTGTGTGTGAGTTTGATGTCAGTGGTGCAACTGCTTTGAGCTCTCCTTCAGCTTCAAGTGATTTATTTGGAACTCAAACAATCGGTTCATATGGGAAAATTCGTTCTTTGAAGGCAGTATCTGTTCTTCAAATGTTGGAGAAACAGATGGGGCCAGACTCTTTTCGGAAGATTCTGCAGATGATAGTTGCTCCAACTCGTGCCTCAAGAACACTAAGTACAAAAGAGTTCAGGCATCTTGCAAACAAGGTCGGTAATCTTGAACGGCCATTCCTGAAAGAATTCTTCCCAAGGTGGGTTGAATCTTCTGGATGCCCAGTTATGAGATTGGGAATCTCCTATAGCAAGAGGAGAAACTTGGTTGAATTAGCTGTTTCACGTGGTTGCACCACAAAAGTTGATCCTGGTCCTGATATTCGCACGAATGGTGATTCTCGAGAAGGTGATACTGGATGGCCAGGAATGATGAGCGTACGTGTCCATGAAACTGATGGAGTGTACGATCATCCAATTGTACCCATGGCTGGTGAAGCTTTGCAGGTGGTGGAAATACAATGTCATTCCAAAGTAGCAGCAAAGCGCTTTCAGAAAACTAAAAAAGGCTCAAAGCCTGATGGTTCTGATGAAAACATAGATGCTTCAAATCAAGATAACCGTGCGAGTATGGATGCACCTTTACTGTGGATCAGAGTGGACCCAGAAATGGAGTATCTCGCTGAGATACATTTTCACCAGCCTGTGCAGATGTGGATCAATCAATTGGAAAAGGACAAAGATGTCATTTCACAATCACAAGCAATATCTGTACTGGAGAAATCACCTCAACTCACTTTTGCTGTGACTAATGCCCTCAATAATTTCTTAAATGATACAAAGGCATTTTGGAGAGTTAGAGTTGAAGCAGCATATGCTTTAGCTGTAACTGCATCAGAGGGCACAGAACTAACTGGACTGCTTCATCTGGTTAAGTTCTATAAAAGCCGCCGATTTGATGCAGATATTGGATTACCCAGGCCGAATGACTTCCATGATATTCCGGAGTACTTTGTTCTTGAGGCAATTCCTCATGCAGTAGCTCTTGTTAGATCAGCAGACAAGAGCAGCCCAAAAGAAGCCATTGAATTTATCCTTCAGCTTCTAAAGTATAATGATAACAACGGAAATGTATACTCTGATGTCTACTGGCTATCTGCAATGGTGCAGGCGATAGGTGAATTAGAATTTGGCCAGCAGGGTGTAGGTCTATTGTCGTCTCTTCTCAAGCGCATTGATCGGCTCCTGCAATTTGATAACTTTATGCCTGGATACAATGGGGTTTTGACTGTCAGCTGCATTCGCACCCTTGCACGTATTGCACAGAGGGTGTCATCTTCCATTTGCCTTGATCGCGTCTGTGAACTAATTGTGCCCTATCGCAACATGGACAAACCATGGAAAGTTCGAATGGAAGCTGGCAGGGTTCTTATTGATCTCGAGTTTCACCATAAAGGACTTGATGCAGCTCTTTTATTATTCTTGAAATATGCTAATGAAGAAAGATCTTTGAGAGTTGGCCTCCTTTGCCTGCTTGCTGGCAAAAAGGCCTACAACAATGTATATCTTCGACATAATGTGTTCTGCATATTGCAAATTGCTGCTGGAAGGTCTCCAACACTGCATGGAGTTCCGAAGGTTGTCACTCCACCTCAAGTTGTCCTGGAGATATCTAGTGATCAGCACACTAAAGCTGATTCCTCAGTTCCTCAACAATCAAGGCCTCAAGAACCTTCCACTAGCACTCCTAGTGTCCGTGAAGTCTTACCTACCTCTGGACCCTTAAAAGATGCGGATAATATATCTAACTGCAGTGAGAGAAGGAATGTTATTTTTATACCCACAAAAGATGCGGATAATATATCTAACTGCAGTGAGAGAAGGAATGTTATTTCTATACCCACAAAAGATGCGGATAATATATCTAACTGCAGTGAGAGAAGGAATGTTGTCAAAATAAGGGTTAAACGTGCTTCATCATCCAGTAAAGCAGATGATGCTGATCACAGAGATCATTCACATGGTAGAAATGAAAATGAAGCAGGTCCATGTAGCTCTATGTCAGTGGATGCACCTATGACTGAAGCACCAGAACCAGTAAATGTAAGTAATCATAACATCGAGGAGCAAAACTCATGCCATGATAGGGAACAAAACTCTTGCCACGATAGGGAATCAAGGATGTCAGCAAGCATTGGCAATGTCAAACTAATGGACAAGCATGAAGTATCCAAGGAGCTACAGTGCACAGCCGATTCCAGGCTAGATGCTCTCCCCAAGGATCACTTCTCTCCCGTTGTTAATGGACAGGAAGTCCTAGACAAGCCACGGAGTCAGCTAGAAGTAGTCTCCACAAGCTATGATGGAAATCAAGCCCCAGACTCCATGAATGGATTGGAAACGAAGGAGAAGAAGAAGGACAAGAAAGACAAAAAGCGGCATCGAGATAAGAAAGATGATCCTGAGTATCTGGAGAAAAAACGGCTTAAGAAAGAGAAGAAAAGGATGGAGAAAGAAAAAGGCAAAAAGCAGAAGGAAGGTGAAGGGGTTTCTTCTTCCGAACAGAAGAACACAGCGAAACCTTCAGACTCGCAAGGAACCTCATCGGCAAGGCCACCAGCTCCAATGCGAATTCCTGAACCCAAGATATCAAATGTGGGTACGCCAGTAGATACTACACGGACATTGACAACTACTAAGATTAGGATCAAAGTCAAGCCTCTGCAAAGATAA
Protein Sequence
  • >LOC_Os09g24440.1
    MAKARKQKGEEQKPDGGGAGGGGGGATVLHQKLCLSIDMENRLIYGYTEIKVQAENDTFALHADNMTIRNILVDGQAAEFEYSPQWKNAGDQQSWSSVSCSKTAADAACSVYISSLNSEAAPNLIISSERSSKAITEPQYEENGENHEENGEKHEENGEKQNENGEKCEENGGKPAQISDDQAVNGCNGSADKKDKEEETEKDNEKEKEDKEEETEKDNEKEKEDKEEETKKDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKENDNEIEKVKNTKLVHIDYILEKAETGLYFTGNILHSNNQIRRAHCWFPCIDSATQRCPFDLEFTVSTNLVAVSNGDLLYQVLSKEDPPRKTYVYKLSTPVSAQWISLVVGPFEVLPDRNDISVSHMCLSQSLSKLENTISFFHSVYSCYEDYLAASFPFGLYKQVFLPPEMIVSPTSLGASTCIFNSDILHDEKVIDQIIDTRIKVAYALARQWFGIYTNAEEATDEWLLDGLAGFLTEHFVKRYLGNNEARYRRFKDVAADLTIFTLLLKPVHESYVAHSFGVDSHINLSFTFQPNSLANYVFASCLAFIHLNLNGWCRAANCIVCEFDVSGATALSSPSASSDLFGTQTIGSYGKIRSLKAVSVLQMLEKQMGPDSFRKILQMIVAPTRASRTLSTKEFRHLANKVGNLERPFLKEFFPRWVESSGCPVMRLGISYSKRRNLVELAVSRGCTTKVDPGPDIRTNGDSREGDTGWPGMMSVRVHETDGVYDHPIVPMAGEALQVVEIQCHSKVAAKRFQKTKKGSKPDGSDENIDASNQDNRASMDAPLLWIRVDPEMEYLAEIHFHQPVQMWINQLEKDKDVISQSQAISVLEKSPQLTFAVTNALNNFLNDTKAFWRVRVEAAYALAVTASEGTELTGLLHLVKFYKSRRFDADIGLPRPNDFHDIPEYFVLEAIPHAVALVRSADKSSPKEAIEFILQLLKYNDNNGNVYSDVYWLSAMVQAIGELEFGQQGVGLLSSLLKRIDRLLQFDNFMPGYNGVLTVSCIRTLARIAQRVSSSICLDRVCELIVPYRNMDKPWKVRMEAGRVLIDLEFHHKGLDAALLLFLKYANEERSLRVGLLCLLAGKKAYNNVYLRHNVFCILQIAAGRSPTLHGVPKVVTPPQVVLEISSDQHTKADSSVPQQSRPQEPSTSTPSVREVLPTSGPLKDADNISNCSERRNVIFIPTKDADNISNCSERRNVISIPTKDADNISNCSERRNVVKIRVKRASSSSKADDADHRDHSHGRNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESRMSASIGNVKLMDKHEVSKELQCTADSRLDALPKDHFSPVVNGQEVLDKPRSQLEVVSTSYDGNQAPDSMNGLETKEKKKDKKDKKRHRDKKDDPEYLEKKRLKKEKKRMEKEKGKKQKEGEGVSSSEQKNTAKPSDSQGTSSARPPAPMRIPEPKISNVGTPVDTTRTLTTTKIRIKVKPLQR*