Gene Details:
- MSU gene ID: LOC_Os09g24220
- RAPdb gene ID: Os09g0407600
- Gene Symbol: OsMSH6
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Our data suggests that OsMSH6 (LOC_Os09g24220) is important in ensuring genome stability by recognizing mismatches that arise spontaneously and provides useful information for investigating the function of the OsMSH6 gene in DNA repair and exploiting MMR mutants in rice induced mutation breeding.
Function-related keywords:
Literature:
- Specific-Locus Amplified Fragment Sequencing Reveals Spontaneous Single-Nucleotide Mutations in Rice OsMsh6 Mutants . DOI: 10.1155/2017/4816973 ; PMID: 28589142
- Effects of OsMSH6 Mutations on Microsatellite Stability and Homeologous Recombination in Rice . DOI: 10.3389/fpls.2020.00220 ; PMID: 32194600
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g24220.1
ATGGCGTCGCCGTCGTCGCGCCGCCTCAGCAACGGCCGCTCCCCGCTCCTCCGCAAGCAGAGCCAGATCACCGCCTTCTTCTCCTCCCCCACCGCCAAGCCCTCGCCCTCGCCGCTGAACCCTAGGGCGACGAAGCCCCCTCTCGCCGTCCCCTCCCCTCCCCCTCCCAACCCGCCATCCCCGCCGCAGGAGGAGGAGACGGCGGTGGGGAGGCGGCTGCGGGTGTACTGGCCGCTGGACGACGCGTGGTACGAGGGGAGGGTGGAGGGCTACGACGTGGGGTCCAGGCGGCACCGCGTCAGGTACGACGACGGCGAGGAGGAGGTGGTGGACCTCGCGAGCGAGAGGTACGAGTGGGCCGCCGCCGCCGATGAGGAGGAGGTGACCCCGCAGCCGTCGAGGAAGCTGCGGCGGCTCCGGCGGATGTCGGATGCCGCAACGGCCAAGTCACCTGGTGCGGTGGATGGTGGTGGGGGTGGGGATGAGACTGCGGATTCCGCTGAGGAGGAGGACGAGGACTGGAAGAATGATGCTGCGGCAGAGAATGATTCGGAGGAGGTGGAGCTGGATGATGAAGAAGACGATGAGGAGGAGGTTGTTGCTGTGAAAACAAGAAAGGGAAAGAAAAATAACCCTTTGTCGACGTCGGCTTCGACGCCAAAATTAGCATCCGGTTTGGGCTCGGCTTCTATTTCAGGGTCCACATTGTCGAAGAAGAGGAGAAAAGTCGATGCGGGTGCGTTGGACTGCGCTAAAAAGTTCAGCTTTGAACCAGCTAATACCACTGGAAAAGTCGAATTGAAAGTGCCAATCAGCTGTAGCCAGAGGGAGCAGCCGTTAGAGAATGCTCTCACCGCTCTTACTGGAGAGGTCGCCGAGCGCTTTGCGCAGCGGCAAGCAGAAAAGTTTAAATTCCTTGGGGAAGGGCGTAAGGATGCGAAAGGGAGACGACCCGGAAACCCCAACTATGATCCTAGAACTCTTTCCTTGCCTTCCCAGTTCTTGAATAGCTTGACAGGCGGACAGAGGCAATGGTGGGAATTTAAATCACAGCACATGGATAAAGTTCTGTTCTTCAAGTATACTGCTGTCACTGCACAATCCAGCTTTTGTTTTAATTCTTATGGCATAACGGGTGACAAGCCTCACTGTGGATTCCCGGAGAAGAATTTTGAATTGAATTTGGAGAAATTAGCTAAGAAGGGTTATCGAGTTCTGGTTATCGAGCAGACTGAAACACCGGAGCAGCTTGACCTCCGCCGTAAAGAAACTGGTGTAAAAGACAAGGTTGTGAGGCGTGAAATATGTGCAATGGTCACAAAAGGAACATTGACAGAAGGGGAGTCTCTGCTGGCAAATCCAGATCCATCATATCTATTTTCTGTGGCTGAAAGTTATCAGTGTGGTTCAGAGAAGGATCAAGATGGTCATACAATTGGTGTTTGCATAGTTGATGTTTCAACAAGCAAATTTATTGTAGGACAGTTCCAAGATGATGCTGAACGCCATGGGCTATGTTCTATTTTATCTGAGATTAGGCCTGCAGAAATCATAAAACCAGCTAAAATGTTGAGTCCAGAAACTGAGAAAGCACTGAAGAGCAATACGAGAGACCCTTTAATAAACAATTTGCTTCCATCCATGGAGTTCTGGGATGCAGAGAAAACTATTCATGAAATAAAGCAATACTATTGCTCATTGGACACACCTGGTGCCGGTGCACAAATCAGTTCTGCCTATCTGCCTGAGCTATTGAGTGAGCTAATTGAAGCGGGAGACAAAACATATGCACTTTCTGCTCTTGGTGGTTCTTTGTTTTATTTAAGGCAATCCCTTCTGGATGAGAAATTGCTTCCATGTGCTGAGTTTGAGCGCCTTACATGCTCAGGGCTCACCAACCCTATCCGCAAGCATATGATACTTGATGCGGCAGCATTGGAAAATCTGGAAATTTTAGAAAATGCAAGAAATGGTGGTCTCTCAGGGACATTGTATGCGCAGTTAAATCATTGTGTTACTGGATTTGGAAAAAGGTTGCTTAAAAGGTGGATTGCAAGGCCATTGTATGAACGCCAGGCAATACTACAGCGTCAAAGTGCCATCGCTACTTTCAAGGGATCTGGGCATGAATGTGCTATCCAATTCCGTAAGGATCTGTCTCGGCTTCCAGACATGGAGCGCCTACTTGCACGCCTTTTTTCTAGCTGTGATAAGAATGGAAGAAGTTCAAAGTCAGTTGTTCTTTATGAAGATGCATCAAAGAGACTGCTTCATCAGTTTACTGCTGCTCTTCGTGGTTGCCAGCAGATGTTCCAAGCATGCTCTTCTATTAGTATGTTGACAAGCACAGATGGATCTTCTCTATTAAATGATTTGTTATCACTAGGCAAAGGGCTACCACATGTTTCTTCTATTCTGGACCACTTCAGAGATGCATTTGATTGGTCAGAAGCAGACAGGAATGGTCGGATCATACCTCATGAAGGTTGTGATCCTCAATATGATGCTGCTTGCATTGCAATTGAGGAGATTGAATCCAGTCTTCAAAAATACCTGAAGGAACAAAGAAAGCTATTGAGTGATTCATCGGTAAAATATGTAGATGTTGGAAAGGATACGTACCTCCTTGAAGTGTCTGAGAACCTGCGAGGTTCTGTTCCCCATAACTATGAGTTGCAGTCTACAAAAAAGGGTTTCTATCGGTACTGGACGCCAGAAGTAAAAGAATTAATATCAGAACTTTCTAAGGCTGAGGCAGAGAAAGAGGCAAAATTGAAATGCATTCTTCAGAATCTGATTCAACTCTTTGTTGAGCATCACAGCAAGTGGAGACAATTGGTTTCTGTAGTTGCTGAGCTTGATGTTTTGATTAGTCTTGCTATTGCCAGTGATTTTTTTGAGGGACCAACTTGCTGTCCAATTATCAAAGAATCATATGGTCCAGATGATACTCCTACTCTCCATGCAAGAAATTTAGGGCACCCCACCCTCCGAAGTGATTCTTTAGGCAGTGGATCTTTTGTACCCAATGACATTAAGATGGGTGGGCCTGGAAATGCCAGCTTTATTGTTCTTACTGGCCCAAATATGGGTGGAAAATCAACTCTTTTGCGTCAAGTTTGTCTTACCATAATTTTGGCACAGATTGGAGCAAATGTTCCTGCTGAAAGCTTTGAACTTTCTCTTGTTGACCGTATGTTTGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGGCAAAGTACGTTCTTAGTGGAGCTCATGGAAACTGCTTCTGTGCTTTCATCAGCAACCAAGAATTCTCTTGTGGCTTTAGATGAGCTTGGGCGCGGTACATCAACCTCTGATGGACAAGCTATTGCGGCATCTGTTCTAGAATATCTAGTTCATCATGTGCAGTGCCTAGGCTTATTTTCAACACACTACCATAGGTTAGCAGCAGAAAATAAGGATAGCAAGGTATCACTCTGCCATATGGCATGTGAGATAAGCAAGGGAGAAGGAGGTTTGGAAGAAGTTACTTTCCTCTACAAGTTAACGCCTGGTTCATGCCCCAAAAGCTATGGTGTAAATGTTGCTCGATTGGCAGGAATACCTGCATCAGTGCTTCAAAGGGCTAATGAGAAGTCAAGTGACTTCGAGGCCAGTTACGGGAAGCGACCCGGTATAACAAAGAATAAGCCCAGCTGTGCACAGGAGGATAAATTTGCCGCCATCAAGGATCTGTTCCGCGTCGTGAAGGCAATGCATCATCGGGAGGATCATGCATCAAGTTTAGGCATGCTCCATGAAGTGCAGAAGCGTGCTAAGGTGCAGGTCATTGGAGAATAA
CDS Sequence
- >LOC_Os09g24220.1
ATGGCGTCGCCGTCGTCGCGCCGCCTCAGCAACGGCCGCTCCCCGCTCCTCCGCAAGCAGAGCCAGATCACCGCCTTCTTCTCCTCCCCCACCGCCAAGCCCTCGCCCTCGCCGCTGAACCCTAGGGCGACGAAGCCCCCTCTCGCCGTCCCCTCCCCTCCCCCTCCCAACCCGCCATCCCCGCCGCAGGAGGAGGAGACGGCGGTGGGGAGGCGGCTGCGGGTGTACTGGCCGCTGGACGACGCGTGGTACGAGGGGAGGGTGGAGGGCTACGACGTGGGGTCCAGGCGGCACCGCGTCAGGTACGACGACGGCGAGGAGGAGGTGGTGGACCTCGCGAGCGAGAGGTACGAGTGGGCCGCCGCCGCCGATGAGGAGGAGGTGACCCCGCAGCCGTCGAGGAAGCTGCGGCGGCTCCGGCGGATGTCGGATGCCGCAACGGCCAAGTCACCTGGTGCGGTGGATGGTGGTGGGGGTGGGGATGAGACTGCGGATTCCGCTGAGGAGGAGGACGAGGACTGGAAGAATGATGCTGCGGCAGAGAATGATTCGGAGGAGGTGGAGCTGGATGATGAAGAAGACGATGAGGAGGAGGTTGTTGCTGTGAAAACAAGAAAGGGAAAGAAAAATAACCCTTTGTCGACGTCGGCTTCGACGCCAAAATTAGCATCCGGTTTGGGCTCGGCTTCTATTTCAGGGTCCACATTGTCGAAGAAGAGGAGAAAAGTCGATGCGGGTGCGTTGGACTGCGCTAAAAAGTTCAGCTTTGAACCAGCTAATACCACTGGAAAAGTCGAATTGAAAGTGCCAATCAGCTGTAGCCAGAGGGAGCAGCCGTTAGAGAATGCTCTCACCGCTCTTACTGGAGAGGTCGCCGAGCGCTTTGCGCAGCGGCAAGCAGAAAAGTTTAAATTCCTTGGGGAAGGGCGTAAGGATGCGAAAGGGAGACGACCCGGAAACCCCAACTATGATCCTAGAACTCTTTCCTTGCCTTCCCAGTTCTTGAATAGCTTGACAGGCGGACAGAGGCAATGGTGGGAATTTAAATCACAGCACATGGATAAAGTTCTGTTCTTCAAGTATACTGCTGTCACTGCACAATCCAGCTTTTGTTTTAATTCTTATGGCATAACGGGTGACAAGCCTCACTGTGGATTCCCGGAGAAGAATTTTGAATTGAATTTGGAGAAATTAGCTAAGAAGGGTTATCGAGTTCTGGTTATCGAGCAGACTGAAACACCGGAGCAGCTTGACCTCCGCCGTAAAGAAACTGGTGTAAAAGACAAGGTTGTGAGGCGTGAAATATGTGCAATGGTCACAAAAGGAACATTGACAGAAGGGGAGTCTCTGCTGGCAAATCCAGATCCATCATATCTATTTTCTGTGGCTGAAAGTTATCAGTGTGGTTCAGAGAAGGATCAAGATGGTCATACAATTGGTGTTTGCATAGTTGATGTTTCAACAAGCAAATTTATTGTAGGACAGTTCCAAGATGATGCTGAACGCCATGGGCTATGTTCTATTTTATCTGAGATTAGGCCTGCAGAAATCATAAAACCAGCTAAAATGTTGAGTCCAGAAACTGAGAAAGCACTGAAGAGCAATACGAGAGACCCTTTAATAAACAATTTGCTTCCATCCATGGAGTTCTGGGATGCAGAGAAAACTATTCATGAAATAAAGCAATACTATTGCTCATTGGACACACCTGGTGCCGGTGCACAAATCAGTTCTGCCTATCTGCCTGAGCTATTGAGTGAGCTAATTGAAGCGGGAGACAAAACATATGCACTTTCTGCTCTTGGTGGTTCTTTGTTTTATTTAAGGCAATCCCTTCTGGATGAGAAATTGCTTCCATGTGCTGAGTTTGAGCGCCTTACATGCTCAGGGCTCACCAACCCTATCCGCAAGCATATGATACTTGATGCGGCAGCATTGGAAAATCTGGAAATTTTAGAAAATGCAAGAAATGGTGGTCTCTCAGGGACATTGTATGCGCAGTTAAATCATTGTGTTACTGGATTTGGAAAAAGGTTGCTTAAAAGGTGGATTGCAAGGCCATTGTATGAACGCCAGGCAATACTACAGCGTCAAAGTGCCATCGCTACTTTCAAGGGATCTGGGCATGAATGTGCTATCCAATTCCGTAAGGATCTGTCTCGGCTTCCAGACATGGAGCGCCTACTTGCACGCCTTTTTTCTAGCTGTGATAAGAATGGAAGAAGTTCAAAGTCAGTTGTTCTTTATGAAGATGCATCAAAGAGACTGCTTCATCAGTTTACTGCTGCTCTTCGTGGTTGCCAGCAGATGTTCCAAGCATGCTCTTCTATTAGTATGTTGACAAGCACAGATGGATCTTCTCTATTAAATGATTTGTTATCACTAGGCAAAGGGCTACCACATGTTTCTTCTATTCTGGACCACTTCAGAGATGCATTTGATTGGTCAGAAGCAGACAGGAATGGTCGGATCATACCTCATGAAGGTTGTGATCCTCAATATGATGCTGCTTGCATTGCAATTGAGGAGATTGAATCCAGTCTTCAAAAATACCTGAAGGAACAAAGAAAGCTATTGAGTGATTCATCGGTAAAATATGTAGATGTTGGAAAGGATACGTACCTCCTTGAAGTGTCTGAGAACCTGCGAGGTTCTGTTCCCCATAACTATGAGTTGCAGTCTACAAAAAAGGGTTTCTATCGGTACTGGACGCCAGAAGTAAAAGAATTAATATCAGAACTTTCTAAGGCTGAGGCAGAGAAAGAGGCAAAATTGAAATGCATTCTTCAGAATCTGATTCAACTCTTTGTTGAGCATCACAGCAAGTGGAGACAATTGGTTTCTGTAGTTGCTGAGCTTGATGTTTTGATTAGTCTTGCTATTGCCAGTGATTTTTTTGAGGGACCAACTTGCTGTCCAATTATCAAAGAATCATATGGTCCAGATGATACTCCTACTCTCCATGCAAGAAATTTAGGGCACCCCACCCTCCGAAGTGATTCTTTAGGCAGTGGATCTTTTGTACCCAATGACATTAAGATGGGTGGGCCTGGAAATGCCAGCTTTATTGTTCTTACTGGCCCAAATATGGGTGGAAAATCAACTCTTTTGCGTCAAGTTTGTCTTACCATAATTTTGGCACAGATTGGAGCAAATGTTCCTGCTGAAAGCTTTGAACTTTCTCTTGTTGACCGTATGTTTGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGGCAAAGTACGTTCTTAGTGGAGCTCATGGAAACTGCTTCTGTGCTTTCATCAGCAACCAAGAATTCTCTTGTGGCTTTAGATGAGCTTGGGCGCGGTACATCAACCTCTGATGGACAAGCTATTGCGGCATCTGTTCTAGAATATCTAGTTCATCATGTGCAGTGCCTAGGCTTATTTTCAACACACTACCATAGGTTAGCAGCAGAAAATAAGGATAGCAAGGTATCACTCTGCCATATGGCATGTGAGATAAGCAAGGGAGAAGGAGGTTTGGAAGAAGTTACTTTCCTCTACAAGTTAACGCCTGGTTCATGCCCCAAAAGCTATGGTGTAAATGTTGCTCGATTGGCAGGAATACCTGCATCAGTGCTTCAAAGGGCTAATGAGAAGTCAAGTGACTTCGAGGCCAGTTACGGGAAGCGACCCGGTATAACAAAGAATAAGCCCAGCTGTGCACAGGAGGATAAATTTGCCGCCATCAAGGATCTGTTCCGCGTCGTGAAGGCAATGCATCATCGGGAGGATCATGCATCAAGTTTAGGCATGCTCCATGAAGTGCAGAAGCGTGCTAAGGTGCAGGTCATTGGAGAATAA
Protein Sequence
- >LOC_Os09g24220.1
MASPSSRRLSNGRSPLLRKQSQITAFFSSPTAKPSPSPLNPRATKPPLAVPSPPPPNPPSPPQEEETAVGRRLRVYWPLDDAWYEGRVEGYDVGSRRHRVRYDDGEEEVVDLASERYEWAAAADEEEVTPQPSRKLRRLRRMSDAATAKSPGAVDGGGGGDETADSAEEEDEDWKNDAAAENDSEEVELDDEEDDEEEVVAVKTRKGKKNNPLSTSASTPKLASGLGSASISGSTLSKKRRKVDAGALDCAKKFSFEPANTTGKVELKVPISCSQREQPLENALTALTGEVAERFAQRQAEKFKFLGEGRKDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFKYTAVTAQSSFCFNSYGITGDKPHCGFPEKNFELNLEKLAKKGYRVLVIEQTETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPETEKALKSNTRDPLINNLLPSMEFWDAEKTIHEIKQYYCSLDTPGAGAQISSAYLPELLSELIEAGDKTYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAALENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFKGSGHECAIQFRKDLSRLPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLHQFTAALRGCQQMFQACSSISMLTSTDGSSLLNDLLSLGKGLPHVSSILDHFRDAFDWSEADRNGRIIPHEGCDPQYDAACIAIEEIESSLQKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQSTKKGFYRYWTPEVKELISELSKAEAEKEAKLKCILQNLIQLFVEHHSKWRQLVSVVAELDVLISLAIASDFFEGPTCCPIIKESYGPDDTPTLHARNLGHPTLRSDSLGSGSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNVARLAGIPASVLQRANEKSSDFEASYGKRPGITKNKPSCAQEDKFAAIKDLFRVVKAMHHREDHASSLGMLHEVQKRAKVQVIGE*