Information report for OsMSH6
Gene Details
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Functional Descriptions
- Our data suggests that OsMSH6 (LOC_Os09g24220) is important in ensuring genome stability by recognizing mismatches that arise spontaneously and provides useful information for investigating the function of the OsMSH6 gene in DNA repair and exploiting MMR mutants in rice induced mutation breeding.
Functional Keywords
Literature and News
- Specific-Locus Amplified Fragment Sequencing Reveals Spontaneous Single-Nucleotide Mutations in Rice OsMsh6 Mutants . DOI: 10.1155/2017/4816973 ; PMID: 28589142
- Effects of OsMSH6 Mutations on Microsatellite Stability and Homeologous Recombination in Rice . DOI: 10.3389/fpls.2020.00220 ; PMID: 32194600
Homologs
- Actinidia chinensis: CEY00_Acc08874, CEY00_Acc00215
- Arabidopsis thaliana: AT3G18524, AT3G24495, AT3G20475, AT3G24320
- Brachypodium distachyon: BRADI_4g08510v3
- Capsicum annuum: CA06g18030
- Daucus carota: DCAR_023890
- Lactuca sativa: Lsat_1_v5_gn_6_82321
- Saccharum spontaneum: Sspon.04G0020140-1A
- Triticum aestivum: TaMSH7-3D;Ph2
Sequences
cDNA Sequence
- >LOC_Os09g24220.1
ATGGCGTCGCCGTCGTCGCGCCGCCTCAGCAACGGCCGCTCCCCGCTCCTCCGCAAGCAGAGCCAGATCACCGCCTTCTTCTCCTCCCCCACCGCCAAGCCCTCGCCCTCGCCGCTGAACCCTAGGGCGACGAAGCCCCCTCTCGCCGTCCCCTCCCCTCCCCCTCCCAACCCGCCATCCCCGCCGCAGGAGGAGGAGACGGCGGTGGGGAGGCGGCTGCGGGTGTACTGGCCGCTGGACGACGCGTGGTACGAGGGGAGGGTGGAGGGCTACGACGTGGGGTCCAGGCGGCACCGCGTCAGGTACGACGACGGCGAGGAGGAGGTGGTGGACCTCGCGAGCGAGAGGTACGAGTGGGCCGCCGCCGCCGATGAGGAGGAGGTGACCCCGCAGCCGTCGAGGAAGCTGCGGCGGCTCCGGCGGATGTCGGATGCCGCAACGGCCAAGTCACCTGGTGCGGTGGATGGTGGTGGGGGTGGGGATGAGACTGCGGATTCCGCTGAGGAGGAGGACGAGGACTGGAAGAATGATGCTGCGGCAGAGAATGATTCGGAGGAGGTGGAGCTGGATGATGAAGAAGACGATGAGGAGGAGGTTGTTGCTGTGAAAACAAGAAAGGGAAAGAAAAATAACCCTTTGTCGACGTCGGCTTCGACGCCAAAATTAGCATCCGGTTTGGGCTCGGCTTCTATTTCAGGGTCCACATTGTCGAAGAAGAGGAGAAAAGTCGATGCGGGTGCGTTGGACTGCGCTAAAAAGTTCAGCTTTGAACCAGCTAATACCACTGGAAAAGTCGAATTGAAAGTGCCAATCAGCTGTAGCCAGAGGGAGCAGCCGTTAGAGAATGCTCTCACCGCTCTTACTGGAGAGGTCGCCGAGCGCTTTGCGCAGCGGCAAGCAGAAAAGTTTAAATTCCTTGGGGAAGGGCGTAAGGATGCGAAAGGGAGACGACCCGGAAACCCCAACTATGATCCTAGAACTCTTTCCTTGCCTTCCCAGTTCTTGAATAGCTTGACAGGCGGACAGAGGCAATGGTGGGAATTTAAATCACAGCACATGGATAAAGTTCTGTTCTTCAAGTATACTGCTGTCACTGCACAATCCAGCTTTTGTTTTAATTCTTATGGCATAACGGGTGACAAGCCTCACTGTGGATTCCCGGAGAAGAATTTTGAATTGAATTTGGAGAAATTAGCTAAGAAGGGTTATCGAGTTCTGGTTATCGAGCAGACTGAAACACCGGAGCAGCTTGACCTCCGCCGTAAAGAAACTGGTGTAAAAGACAAGGTTGTGAGGCGTGAAATATGTGCAATGGTCACAAAAGGAACATTGACAGAAGGGGAGTCTCTGCTGGCAAATCCAGATCCATCATATCTATTTTCTGTGGCTGAAAGTTATCAGTGTGGTTCAGAGAAGGATCAAGATGGTCATACAATTGGTGTTTGCATAGTTGATGTTTCAACAAGCAAATTTATTGTAGGACAGTTCCAAGATGATGCTGAACGCCATGGGCTATGTTCTATTTTATCTGAGATTAGGCCTGCAGAAATCATAAAACCAGCTAAAATGTTGAGTCCAGAAACTGAGAAAGCACTGAAGAGCAATACGAGAGACCCTTTAATAAACAATTTGCTTCCATCCATGGAGTTCTGGGATGCAGAGAAAACTATTCATGAAATAAAGCAATACTATTGCTCATTGGACACACCTGGTGCCGGTGCACAAATCAGTTCTGCCTATCTGCCTGAGCTATTGAGTGAGCTAATTGAAGCGGGAGACAAAACATATGCACTTTCTGCTCTTGGTGGTTCTTTGTTTTATTTAAGGCAATCCCTTCTGGATGAGAAATTGCTTCCATGTGCTGAGTTTGAGCGCCTTACATGCTCAGGGCTCACCAACCCTATCCGCAAGCATATGATACTTGATGCGGCAGCATTGGAAAATCTGGAAATTTTAGAAAATGCAAGAAATGGTGGTCTCTCAGGGACATTGTATGCGCAGTTAAATCATTGTGTTACTGGATTTGGAAAAAGGTTGCTTAAAAGGTGGATTGCAAGGCCATTGTATGAACGCCAGGCAATACTACAGCGTCAAAGTGCCATCGCTACTTTCAAGGGATCTGGGCATGAATGTGCTATCCAATTCCGTAAGGATCTGTCTCGGCTTCCAGACATGGAGCGCCTACTTGCACGCCTTTTTTCTAGCTGTGATAAGAATGGAAGAAGTTCAAAGTCAGTTGTTCTTTATGAAGATGCATCAAAGAGACTGCTTCATCAGTTTACTGCTGCTCTTCGTGGTTGCCAGCAGATGTTCCAAGCATGCTCTTCTATTAGTATGTTGACAAGCACAGATGGATCTTCTCTATTAAATGATTTGTTATCACTAGGCAAAGGGCTACCACATGTTTCTTCTATTCTGGACCACTTCAGAGATGCATTTGATTGGTCAGAAGCAGACAGGAATGGTCGGATCATACCTCATGAAGGTTGTGATCCTCAATATGATGCTGCTTGCATTGCAATTGAGGAGATTGAATCCAGTCTTCAAAAATACCTGAAGGAACAAAGAAAGCTATTGAGTGATTCATCGGTAAAATATGTAGATGTTGGAAAGGATACGTACCTCCTTGAAGTGTCTGAGAACCTGCGAGGTTCTGTTCCCCATAACTATGAGTTGCAGTCTACAAAAAAGGGTTTCTATCGGTACTGGACGCCAGAAGTAAAAGAATTAATATCAGAACTTTCTAAGGCTGAGGCAGAGAAAGAGGCAAAATTGAAATGCATTCTTCAGAATCTGATTCAACTCTTTGTTGAGCATCACAGCAAGTGGAGACAATTGGTTTCTGTAGTTGCTGAGCTTGATGTTTTGATTAGTCTTGCTATTGCCAGTGATTTTTTTGAGGGACCAACTTGCTGTCCAATTATCAAAGAATCATATGGTCCAGATGATACTCCTACTCTCCATGCAAGAAATTTAGGGCACCCCACCCTCCGAAGTGATTCTTTAGGCAGTGGATCTTTTGTACCCAATGACATTAAGATGGGTGGGCCTGGAAATGCCAGCTTTATTGTTCTTACTGGCCCAAATATGGGTGGAAAATCAACTCTTTTGCGTCAAGTTTGTCTTACCATAATTTTGGCACAGATTGGAGCAAATGTTCCTGCTGAAAGCTTTGAACTTTCTCTTGTTGACCGTATGTTTGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGGCAAAGTACGTTCTTAGTGGAGCTCATGGAAACTGCTTCTGTGCTTTCATCAGCAACCAAGAATTCTCTTGTGGCTTTAGATGAGCTTGGGCGCGGTACATCAACCTCTGATGGACAAGCTATTGCGGCATCTGTTCTAGAATATCTAGTTCATCATGTGCAGTGCCTAGGCTTATTTTCAACACACTACCATAGGTTAGCAGCAGAAAATAAGGATAGCAAGGTATCACTCTGCCATATGGCATGTGAGATAAGCAAGGGAGAAGGAGGTTTGGAAGAAGTTACTTTCCTCTACAAGTTAACGCCTGGTTCATGCCCCAAAAGCTATGGTGTAAATGTTGCTCGATTGGCAGGAATACCTGCATCAGTGCTTCAAAGGGCTAATGAGAAGTCAAGTGACTTCGAGGCCAGTTACGGGAAGCGACCCGGTATAACAAAGAATAAGCCCAGCTGTGCACAGGAGGATAAATTTGCCGCCATCAAGGATCTGTTCCGCGTCGTGAAGGCAATGCATCATCGGGAGGATCATGCATCAAGTTTAGGCATGCTCCATGAAGTGCAGAAGCGTGCTAAGGTGCAGGTCATTGGAGAATAA
CDS Sequence
- >LOC_Os09g24220.1
ATGGCGTCGCCGTCGTCGCGCCGCCTCAGCAACGGCCGCTCCCCGCTCCTCCGCAAGCAGAGCCAGATCACCGCCTTCTTCTCCTCCCCCACCGCCAAGCCCTCGCCCTCGCCGCTGAACCCTAGGGCGACGAAGCCCCCTCTCGCCGTCCCCTCCCCTCCCCCTCCCAACCCGCCATCCCCGCCGCAGGAGGAGGAGACGGCGGTGGGGAGGCGGCTGCGGGTGTACTGGCCGCTGGACGACGCGTGGTACGAGGGGAGGGTGGAGGGCTACGACGTGGGGTCCAGGCGGCACCGCGTCAGGTACGACGACGGCGAGGAGGAGGTGGTGGACCTCGCGAGCGAGAGGTACGAGTGGGCCGCCGCCGCCGATGAGGAGGAGGTGACCCCGCAGCCGTCGAGGAAGCTGCGGCGGCTCCGGCGGATGTCGGATGCCGCAACGGCCAAGTCACCTGGTGCGGTGGATGGTGGTGGGGGTGGGGATGAGACTGCGGATTCCGCTGAGGAGGAGGACGAGGACTGGAAGAATGATGCTGCGGCAGAGAATGATTCGGAGGAGGTGGAGCTGGATGATGAAGAAGACGATGAGGAGGAGGTTGTTGCTGTGAAAACAAGAAAGGGAAAGAAAAATAACCCTTTGTCGACGTCGGCTTCGACGCCAAAATTAGCATCCGGTTTGGGCTCGGCTTCTATTTCAGGGTCCACATTGTCGAAGAAGAGGAGAAAAGTCGATGCGGGTGCGTTGGACTGCGCTAAAAAGTTCAGCTTTGAACCAGCTAATACCACTGGAAAAGTCGAATTGAAAGTGCCAATCAGCTGTAGCCAGAGGGAGCAGCCGTTAGAGAATGCTCTCACCGCTCTTACTGGAGAGGTCGCCGAGCGCTTTGCGCAGCGGCAAGCAGAAAAGTTTAAATTCCTTGGGGAAGGGCGTAAGGATGCGAAAGGGAGACGACCCGGAAACCCCAACTATGATCCTAGAACTCTTTCCTTGCCTTCCCAGTTCTTGAATAGCTTGACAGGCGGACAGAGGCAATGGTGGGAATTTAAATCACAGCACATGGATAAAGTTCTGTTCTTCAAGTATACTGCTGTCACTGCACAATCCAGCTTTTGTTTTAATTCTTATGGCATAACGGGTGACAAGCCTCACTGTGGATTCCCGGAGAAGAATTTTGAATTGAATTTGGAGAAATTAGCTAAGAAGGGTTATCGAGTTCTGGTTATCGAGCAGACTGAAACACCGGAGCAGCTTGACCTCCGCCGTAAAGAAACTGGTGTAAAAGACAAGGTTGTGAGGCGTGAAATATGTGCAATGGTCACAAAAGGAACATTGACAGAAGGGGAGTCTCTGCTGGCAAATCCAGATCCATCATATCTATTTTCTGTGGCTGAAAGTTATCAGTGTGGTTCAGAGAAGGATCAAGATGGTCATACAATTGGTGTTTGCATAGTTGATGTTTCAACAAGCAAATTTATTGTAGGACAGTTCCAAGATGATGCTGAACGCCATGGGCTATGTTCTATTTTATCTGAGATTAGGCCTGCAGAAATCATAAAACCAGCTAAAATGTTGAGTCCAGAAACTGAGAAAGCACTGAAGAGCAATACGAGAGACCCTTTAATAAACAATTTGCTTCCATCCATGGAGTTCTGGGATGCAGAGAAAACTATTCATGAAATAAAGCAATACTATTGCTCATTGGACACACCTGGTGCCGGTGCACAAATCAGTTCTGCCTATCTGCCTGAGCTATTGAGTGAGCTAATTGAAGCGGGAGACAAAACATATGCACTTTCTGCTCTTGGTGGTTCTTTGTTTTATTTAAGGCAATCCCTTCTGGATGAGAAATTGCTTCCATGTGCTGAGTTTGAGCGCCTTACATGCTCAGGGCTCACCAACCCTATCCGCAAGCATATGATACTTGATGCGGCAGCATTGGAAAATCTGGAAATTTTAGAAAATGCAAGAAATGGTGGTCTCTCAGGGACATTGTATGCGCAGTTAAATCATTGTGTTACTGGATTTGGAAAAAGGTTGCTTAAAAGGTGGATTGCAAGGCCATTGTATGAACGCCAGGCAATACTACAGCGTCAAAGTGCCATCGCTACTTTCAAGGGATCTGGGCATGAATGTGCTATCCAATTCCGTAAGGATCTGTCTCGGCTTCCAGACATGGAGCGCCTACTTGCACGCCTTTTTTCTAGCTGTGATAAGAATGGAAGAAGTTCAAAGTCAGTTGTTCTTTATGAAGATGCATCAAAGAGACTGCTTCATCAGTTTACTGCTGCTCTTCGTGGTTGCCAGCAGATGTTCCAAGCATGCTCTTCTATTAGTATGTTGACAAGCACAGATGGATCTTCTCTATTAAATGATTTGTTATCACTAGGCAAAGGGCTACCACATGTTTCTTCTATTCTGGACCACTTCAGAGATGCATTTGATTGGTCAGAAGCAGACAGGAATGGTCGGATCATACCTCATGAAGGTTGTGATCCTCAATATGATGCTGCTTGCATTGCAATTGAGGAGATTGAATCCAGTCTTCAAAAATACCTGAAGGAACAAAGAAAGCTATTGAGTGATTCATCGGTAAAATATGTAGATGTTGGAAAGGATACGTACCTCCTTGAAGTGTCTGAGAACCTGCGAGGTTCTGTTCCCCATAACTATGAGTTGCAGTCTACAAAAAAGGGTTTCTATCGGTACTGGACGCCAGAAGTAAAAGAATTAATATCAGAACTTTCTAAGGCTGAGGCAGAGAAAGAGGCAAAATTGAAATGCATTCTTCAGAATCTGATTCAACTCTTTGTTGAGCATCACAGCAAGTGGAGACAATTGGTTTCTGTAGTTGCTGAGCTTGATGTTTTGATTAGTCTTGCTATTGCCAGTGATTTTTTTGAGGGACCAACTTGCTGTCCAATTATCAAAGAATCATATGGTCCAGATGATACTCCTACTCTCCATGCAAGAAATTTAGGGCACCCCACCCTCCGAAGTGATTCTTTAGGCAGTGGATCTTTTGTACCCAATGACATTAAGATGGGTGGGCCTGGAAATGCCAGCTTTATTGTTCTTACTGGCCCAAATATGGGTGGAAAATCAACTCTTTTGCGTCAAGTTTGTCTTACCATAATTTTGGCACAGATTGGAGCAAATGTTCCTGCTGAAAGCTTTGAACTTTCTCTTGTTGACCGTATGTTTGTTCGAATGGGAGCAAGGGATCATATTATGGCTGGGCAAAGTACGTTCTTAGTGGAGCTCATGGAAACTGCTTCTGTGCTTTCATCAGCAACCAAGAATTCTCTTGTGGCTTTAGATGAGCTTGGGCGCGGTACATCAACCTCTGATGGACAAGCTATTGCGGCATCTGTTCTAGAATATCTAGTTCATCATGTGCAGTGCCTAGGCTTATTTTCAACACACTACCATAGGTTAGCAGCAGAAAATAAGGATAGCAAGGTATCACTCTGCCATATGGCATGTGAGATAAGCAAGGGAGAAGGAGGTTTGGAAGAAGTTACTTTCCTCTACAAGTTAACGCCTGGTTCATGCCCCAAAAGCTATGGTGTAAATGTTGCTCGATTGGCAGGAATACCTGCATCAGTGCTTCAAAGGGCTAATGAGAAGTCAAGTGACTTCGAGGCCAGTTACGGGAAGCGACCCGGTATAACAAAGAATAAGCCCAGCTGTGCACAGGAGGATAAATTTGCCGCCATCAAGGATCTGTTCCGCGTCGTGAAGGCAATGCATCATCGGGAGGATCATGCATCAAGTTTAGGCATGCTCCATGAAGTGCAGAAGCGTGCTAAGGTGCAGGTCATTGGAGAATAA
Protein Sequence
- >LOC_Os09g24220.1
MASPSSRRLSNGRSPLLRKQSQITAFFSSPTAKPSPSPLNPRATKPPLAVPSPPPPNPPSPPQEEETAVGRRLRVYWPLDDAWYEGRVEGYDVGSRRHRVRYDDGEEEVVDLASERYEWAAAADEEEVTPQPSRKLRRLRRMSDAATAKSPGAVDGGGGGDETADSAEEEDEDWKNDAAAENDSEEVELDDEEDDEEEVVAVKTRKGKKNNPLSTSASTPKLASGLGSASISGSTLSKKRRKVDAGALDCAKKFSFEPANTTGKVELKVPISCSQREQPLENALTALTGEVAERFAQRQAEKFKFLGEGRKDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFKYTAVTAQSSFCFNSYGITGDKPHCGFPEKNFELNLEKLAKKGYRVLVIEQTETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPETEKALKSNTRDPLINNLLPSMEFWDAEKTIHEIKQYYCSLDTPGAGAQISSAYLPELLSELIEAGDKTYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAALENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFKGSGHECAIQFRKDLSRLPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLHQFTAALRGCQQMFQACSSISMLTSTDGSSLLNDLLSLGKGLPHVSSILDHFRDAFDWSEADRNGRIIPHEGCDPQYDAACIAIEEIESSLQKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQSTKKGFYRYWTPEVKELISELSKAEAEKEAKLKCILQNLIQLFVEHHSKWRQLVSVVAELDVLISLAIASDFFEGPTCCPIIKESYGPDDTPTLHARNLGHPTLRSDSLGSGSFVPNDIKMGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNVARLAGIPASVLQRANEKSSDFEASYGKRPGITKNKPSCAQEDKFAAIKDLFRVVKAMHHREDHASSLGMLHEVQKRAKVQVIGE*