Gene Details:
- MSU gene ID: LOC_Os09g12750
- RAPdb gene ID: Os09g0299000
- Gene Symbol: OsPHL3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- OsPHL3 contains a MYB-CC domain, and was localized in the nucleus with transcriptional activation potential.
- Rice lines overexpressing OsPHL3 showed a delayed flowering time in the genetic background of TP309 under both long-day (Beijing) and short-day (Hainan) conditions.
- By contrast, the knockout rice lines of OsPHL3 by CRISPR/Cas9 technology promoted flowering time regardless of genetic backgrounds (i.
- Further analysis indicated that OsPHL3 delayed flowering time by down-regulating the expression of Hd3a and RFT1 through promoting Hd1 under long-day conditions (LDs), or suppressing Ehd1/Hd1 under short-day conditions (SDs).
Function-related keywords:
Literature:
- Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis . DOI: 10.1186/s12870-018-1382-6 ; PMID: 30081823
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g12750.1
AGATTATACTACAACCCTCCAATCTATAAACACAGAAGTTGAAGAGAGAGAAAGAAGCAATAGAGGAGAGAGAAGAGAAGAGGTCAAGAAGAGAAGCAAGAGGAGAGAGGAGAATCGCTGCCTCTGCCACTGGAAAGCAGCAGCAGCAGGGGAGAGGCAGCAGGCAGCAGCAGAGGAGAAGCAAGAAGCAAGAAAGAGAGAGAAAGCGTTGGGACTTTTCATTGGATCCTCCGCTTTTGGGAGGAGCAGCAAAGGTCTCGTCTTTCCTCTCTTCTTCTCTTCCTTGTTGCCGGCGAGGAGGAAGAAGAAAGAGGAGGAGATGTTCCCGCCTGGGCTGATCCACCACCGGCCGGACGGCGGCGAGGCGGGGCGTGCGGCGGGGGGAGGGCCCAGCCTGGTGCTGACCGCCGATCCCAAGCCCCGCCTCCGGTGGACGGCCGACCTCCACGAGCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGCCCCGAGAAAGCAACACCTAAAACTATCTTGAGGACAATGGGTGTGAAGGGGCTCACTCTTTTCCACTTGAAGAGTCATCTTCAGAAATATAGACTGGGGAAACAATCTGGAAAAGAGGCATCGGAGCAATCTAAAGATGCATCCTATCTTCTAGATGCCCAAGGTGGAATGAGTGTGTCGCCTAGAGTTTCTACTCAAGATGTTAAAGAAAATCAAGAGGTCAAGGAAGCATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAAGCGGCTTCAGCATCTCGGACAATGATCTCCCGGAGCTCTCTGGTGGTGTCATGTGCGGCTCCGCTGACACATTGAGCTCCTCCATCTTCCACCAGCTCTCTGTCAGCCCAATCAACCTGCATAGTCCTGAGGGCAAGCCGACGCCCTCGGGCATCGAAGGCCAAATGATCCTCCAGAAGTCACCTGAGCTTAAGCGCAAGTCTTGCTGAGCCGTGTCGTTCGACGCAATCTGGATGTGCAAACACCAGTTTTCTTGTCATGGGGGTAGTCATGTCGAATTTCGGAATTCGAATTTCGGTAAGAAGGGGGGATGCTCTGCCAATCTTGTAGAGGCCATCTTGTTCTCTGGCTAATGCATGCCAACATTGTCAAGTAGCAAGGTTTTCTCTCTTATGTTATCAATCCAATCAGCATATCTTATATAAAATGCCTAATGTGCTAGATCAAGTGCCTTCCTTGATAAATAATATTATTACCGTGAGATTTGGGTTCTGACATGATTAACTGATATATCCATCTGAAACAATTTCGAATATCAGTTCCTAGCTTTCTATGCA - >LOC_Os09g12750.2
AGATTATACTACAACCCTCCAATCTATAAACACAGAAGTTGAAGAGAGAGAAAGAAGCAATAGAGGAGAGAGAAGAGAAGAGGTCAAGAAGAGAAGCAAGAGGAGAGAGGAGAATCGCTGCCTCTGCCACTGGAAAGCAGCAGCAGCAGGGGAGAGGCAGCAGGCAGCAGCAGAGGAGAAGCAAGAAGCAAGAAAGAGAGAGAAAGCGTTGGGACTTTTCATTGGATCCTCCGCTTTTGGGAGGAGCAGCAAAGGTCTCGTCTTTCCTCTCTTCTTCTCTTCCTTGTTGCCGGCGAGGAGGAAGAAGAAAGAGGAGGAGATGTTCCCGCCTGGGCTGATCCACCACCGGCCGGACGGCGGCGAGGCGGGGCGTGCGGCGGGGGGAGGGCCCAGCCTGGTGCTGACCGCCGATCCCAAGCCCCGCCTCCGGTGGACGGCCGACCTCCACGAGCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGCCCCGAGAAAGCAACACCTAAAACTATCTTGAGGACAATGGGTGTGAAGGGGCTCACTCTTTTCCACTTGAAGAGTCATCTTCAGAAATATAGACTGGGGAAACAATCTGGAAAAGAGGCATCGGAGCAATCTAAAGATGCATCCTATCTTCTAGATGCCCAAGGTGGAATGAGTGTGTCGCCTAGAGTTTCTACTCAAGATGTTAAAGAAAATCAAGAGGTCAAGGAAGCATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAAGCGGCTTCAGCATCTCGGACAATGATCTCCCGGAGCTCTCTGGTGGTGTCATGTGCGGCTCCGCTGACACATTGAGCTCCTCCATCTTCCACCAGCTCTCTGTCAGCCCAATCAACCTGCATAGTCCTGAGGGCAAGCCGACGCCCTCGGGCATCGAAGGCCAAATGATCCTCCAGAAGTCACCTGAGCTTAAGCGCAAGTCTTGCTGAGCCGTGTCGTTCGACGCAATCTGGATGTGCAAACACCAGTTTTCTTGTCATGGGGGTAGTCATGTCGAATTTCGGAATTCGAATTTCGGTAAGAAGGGGGGATGCTCTGCCAATCTTGTAGAGGCCATCTTGTTCTCTGGCTAATGCATGCCAACATTGTCAAGTAGCAAGGTTTTCTCTCTTATGTTATCAATCCAATCAGCATATCTTATATAAAATGCCTAATGTGCTAGATCAAGTGCCTTCCTTGATAAATAATATTATTACCGTGAGATTTGGGTTCTGACATGATTAACTGATATATCCATCTGAAACAATTTCGAATATCAGTTCCTAGCTTTCTATGCA
CDS Sequence
- >LOC_Os09g12750.1
ATGTTCCCGCCTGGGCTGATCCACCACCGGCCGGACGGCGGCGAGGCGGGGCGTGCGGCGGGGGGAGGGCCCAGCCTGGTGCTGACCGCCGATCCCAAGCCCCGCCTCCGGTGGACGGCCGACCTCCACGAGCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGCCCCGAGAAAGCAACACCTAAAACTATCTTGAGGACAATGGGTGTGAAGGGGCTCACTCTTTTCCACTTGAAGAGTCATCTTCAGAAATATAGACTGGGGAAACAATCTGGAAAAGAGGCATCGGAGCAATCTAAAGATGCATCCTATCTTCTAGATGCCCAAGGTGGAATGAGTGTGTCGCCTAGAGTTTCTACTCAAGATGTTAAAGAAAATCAAGAGGTCAAGGAAGCATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAAGCGGCTTCAGCATCTCGGACAATGATCTCCCGGAGCTCTCTGGTGGTGTCATGTGCGGCTCCGCTGACACATTGAGCTCCTCCATCTTCCACCAGCTCTCTGTCAGCCCAATCAACCTGCATAGTCCTGAGGGCAAGCCGACGCCCTCGGGCATCGAAGGCCAAATGATCCTCCAGAAGTCACCTGAGCTTAAGCGCAAGTCTTGCTGA - >LOC_Os09g12750.2
ATGTTCCCGCCTGGGCTGATCCACCACCGGCCGGACGGCGGCGAGGCGGGGCGTGCGGCGGGGGGAGGGCCCAGCCTGGTGCTGACCGCCGATCCCAAGCCCCGCCTCCGGTGGACGGCCGACCTCCACGAGCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGCCCCGAGAAAGCAACACCTAAAACTATCTTGAGGACAATGGGTGTGAAGGGGCTCACTCTTTTCCACTTGAAGAGTCATCTTCAGAAATATAGACTGGGGAAACAATCTGGAAAAGAGGCATCGGAGCAATCTAAAGATGCATCCTATCTTCTAGATGCCCAAGGTGGAATGAGTGTGTCGCCTAGAGTTTCTACTCAAGATGTTAAAGAAAATCAAGAGGTCAAGGAAGCATTGCGAGCTCAGATGGAAATGCAACGAAGACTGCATGAACAAGTGGAGGTCCAGAAGCATGTGCAGATCAGAATGGAAGCCTACCAGAAGTACATCGACACTTTACTAGAGAAGGCATGCAAGATCGTCTCCGAGCAGCTTGCCTCAAGCGGCTTCAGCATCTCGGACAATGATCTCCCGGAGCTCTCTGGTGGTGTCATGTGCGGCTCCGCTGACACATTGAGCTCCTCCATCTTCCACCAGCTCTCTGTCAGCCCAATCAACCTGCATAGTCCTGAGGGCAAGCCGACGCCCTCGGGCATCGAAGGCCAAATGATCCTCCAGAAGTCACCTGAGCTTAAGCGCAAGTCTTGCTGA
Protein Sequence
- >LOC_Os09g12750.1
MFPPGLIHHRPDGGEAGRAAGGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEASEQSKDASYLLDAQGGMSVSPRVSTQDVKENQEVKEALRAQMEMQRRLHEQVEVQKHVQIRMEAYQKYIDTLLEKACKIVSEQLASSGFSISDNDLPELSGGVMCGSADTLSSSIFHQLSVSPINLHSPEGKPTPSGIEGQMILQKSPELKRKSC* - >LOC_Os09g12750.2
MFPPGLIHHRPDGGEAGRAAGGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEASEQSKDASYLLDAQGGMSVSPRVSTQDVKENQEVKEALRAQMEMQRRLHEQVEVQKHVQIRMEAYQKYIDTLLEKACKIVSEQLASSGFSISDNDLPELSGGVMCGSADTLSSSIFHQLSVSPINLHSPEGKPTPSGIEGQMILQKSPELKRKSC*