Information report for Sub1C
Gene Details
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Functional Descriptions
- Sub1C is invariably present and acts downstream of the enhancement of GA responsiveness during submergence.
- Expression of rice SUB1A and Sub1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism.
- SUB1 encodes two or three transcription factors of the group VII ethylene response factor family: SUB1A, SUB1B and Sub1C.
- The objectives of this study were to (a) develop mega varieties with Sub1 introgression that are submergence tolerant, (b) assess the performance of Sub1 in different genetic backgrounds, (c) determine the roles of the Sub1A and Sub1C genes in conferring tolerance, and (d) assess the level of tolerance in F(1) hybrids heterozygous for the Sub1A-1-tolerant allele.
Functional Keywords
- submergence , transcription-factor , ethylene , flower , ga
Literature and News
- The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors . DOI: 10.1104/pp.109.152157 ; PMID: 20107022
- Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond . DOI: 10.1093/aob/mcn206 ; PMID: 18974101
- Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism . DOI: 10.1111/j.1365-313X.2011.04605.x ; PMID: 21481028
Gene Resources
- UniProt: Q6EN68
- EMBL: AK065344, AP014965, EU847519
- AlphaFoldDB: Q6EN68
- EnsemblPlants: Os09t0286600-01, Os09t0286600-02
- Gramene: Os09t0286600-01, Os09t0286600-02
- KEGG: osa:4346628
- Orthologous matrix: NKCVHGH
- InterPro: IPR001471, IPR016177, IPR036955
- PANTHER: PTHR31190, PTHR31190:SF494
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- OrthoDB: Q6EN68
- SWISS-MODEL: Q6EN68
- Conserved Domain Database: cd00018
- eggNOG: ENOG502QV26
Sequences
cDNA Sequence
- >LOC_Os09g11460.1
ACCATGACTGCAAAATTTCCAAGTTTCTCGCTAGTTTAAATGCACGCCGCTAGCTTAGCTACTCTCTTCCACCCACAACCCCCAAGCATCAGCATCACAACCCACCAATCGAATCGATCGAACAAGACACGACACCATGCGCCGCCGCGTCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCGTCGCCGGCGAGGCATCACAAGGCGCGGCGCAGCAGGAGGAAGCTCGCCGTCGACGAGGACTGGGAGGCCGCCTTCCGCGAGTTCCTCTCCCGCGACCACGACGACGACGACGACGACCACGACGGTCAGCATGTCGTTGTTGCGCCGTTGATCCGTGGTAGTGACAAGTGCGTCCACGGCCACGAGGTGGTGGCGTCGACGGTCGGCGGTGGCGCAAGCGGCGGACGACGACGAGCCGACGACGACGACGGCGAGCGGCGGCGGCGGCGGCGGAGGGAGAAGCGGAGCTACCCGTACCGCGGCATCCGGCAGCGGCCGTGGGGGAGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCATCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGGCGCCGCGCGCGCCTACGACGACGAGGTTCGCCGCATCTACGGCGGCAACGCCAAGACCAACTTCCCCCCATCGCCGCCCACGCCGCCGCCGCCGGAGAAGCCAGCGGCGGAGAGGAGCCCCTCGACGACGCCGACGACGACCACGGAGGACTCCGGCGACTCGCGCATACTCATCGAGTGCTGCTCCGACGACCTGATGGACAGCCTCCTCGCCGCCTTCGACATGACCACCGGCGACATGCGCTTCTGGAGCTAACGAACAACAGAGCAGATTCAGGACAACATAAACGGCACGTCTTTGCAACCTTGACATGCGACTCGCCTAATAATCTTGTCAAACAAGGGCCGCCAGCTTAATTAGCTTTTTCCAAAGGTGGGGAACAATTTTGGGGGATGCAATTAGGACGCACAGAGATGACCCCAACTTGTCAATGGGAATTGAACTCTGATGACCTTTGTAATGATAATCAAGGCACCACATTGTGGGGTTAAGCAAAGTTTTGGCAAATTAGCTTTGCCTTGCAGGAATAAATCAGCATTTCTTTTTTTTTCCTTTCACTGGACCCCAATAAGGTAATTTGCATACATATGTCCCATGGATCGAACAATATGAAAAGTAATTGTATAGTGTTGGTTGCAGAGGTTATCAACACTTATTCGGGTTACCGCGACTCTCGATTAGTCAATCACCCTCTATATATGCTATTGTTGTCGTGATGTTGTCATGGTTATGTACGCTGTGGTTCCCTAGCTTGGGTTGTAGAGTTCGACGCCAAGTTTACTACCATATACCATAAATACAATTCCAAATCCAACTAT - >LOC_Os09g11460.2
ACCATGACTGCAAAATTTCCAAGTTTCTCGCTAGTTTAAATGCACGCCGCTAGCTTAGCTACTCTCTTCCACCCACAACCCCCAAGCATCAGCATCACAACCCACCAATCGAATCGATCGAACAAGACACGACACCATGCGCCGCCGCGTCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCGTCGCCGGCGAGGCATCACAAGGCGCGGCGCAGCAGGAGGAAGCTCGCCGTCGACGAGGACTGGGAGGCCGCCTTCCGCGAGTTCCTCTCCCGCGACCACGACGACGACGACGACGACCACGACGGTCAGCATGTCGTTGTTGCGCCGTTGATCCGTGGTAGTGACAAGTGCGTCCACGGCCACGAGGTGGTGGCGTCGACGGTCGGCGGTGGCGCAAGCGGCGGACGACGACGAGCCGACGACGACGACGGCGAGCGGCGGCGGCGGCGGCGGAGGGAGAAGCGGAGCTACCCGTACCGCGGCATCCGGCAGCGGCCGTGGGGGAGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCATCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGGCGCCGCGCGCGCCTACGACGACGAGGTTCGCCGCATCTACGGCGGCAACGCCAAGACCAACTTCCCCCCATCGCCGCCCACGCCGCCGCCGCCGGAGAAGCCAGCGGCGGAGAGGAGCCCCTCGACGACGCCGACGACGACCACGGAGGACTCCGGCGACTCGCGCATACTCATCGAGTGCTGCTCCGACGACCTGATGGACAGCCTCCTCGCCGCCTTCGACATGACCACCGGCGACATGCGCTTCTGGAGCTAACGAACAACAGAGCAGATTCAGGACAACATAAACGGCACGTCTTTGCAACCTTGACATGCGACTCGCCTAATAATCTTGTCAAACAAGGGCCGCCAGCTTAATTAGCTTTTTCCAAAGGTGGGGAACAATTTTGGGGGATGCAATTAGGACGCACAGAGATGACCCCAACTTGTCAATGGGAATTGAACTCTGATGACCTTTGTAATGATAATCAAGGCACCACATTGTGGGGTTAAGCAAAGTTTTGGCAAATTAGCTTTGCCTTGCAGGAATAAATCAGCATTTCTTTTTTTTTCCTTTCACTGGACCCCAATAAGGTAATTTGCATACATATGTCCCATGGATCGAACAATATGAAAAGTAATTGTATAGTGTTGGTTGCAGAGGTTATCAACACTTATTCGGGTTACCGCGACTCTCGATTAGTCAATCACCCTCTATATATGCTATTGTTGTCGTGATGTTGTCATGGTTATGTACGCTGTGGTTCCCTAGCTTGGGTTGTAGAGTTCGACGCCAAGTTTACTACCATATACCATAAATACAATTCCAAATCCAACTAT
CDS Sequence
- >LOC_Os09g11460.1
ATGCGCCGCCGCGTCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCGTCGCCGGCGAGGCATCACAAGGCGCGGCGCAGCAGGAGGAAGCTCGCCGTCGACGAGGACTGGGAGGCCGCCTTCCGCGAGTTCCTCTCCCGCGACCACGACGACGACGACGACGACCACGACGGTCAGCATGTCGTTGTTGCGCCGTTGATCCGTGGTAGTGACAAGTGCGTCCACGGCCACGAGGTGGTGGCGTCGACGGTCGGCGGTGGCGCAAGCGGCGGACGACGACGAGCCGACGACGACGACGGCGAGCGGCGGCGGCGGCGGCGGAGGGAGAAGCGGAGCTACCCGTACCGCGGCATCCGGCAGCGGCCGTGGGGGAGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCATCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGGCGCCGCGCGCGCCTACGACGACGAGGTTCGCCGCATCTACGGCGGCAACGCCAAGACCAACTTCCCCCCATCGCCGCCCACGCCGCCGCCGCCGGAGAAGCCAGCGGCGGAGAGGAGCCCCTCGACGACGCCGACGACGACCACGGAGGACTCCGGCGACTCGCGCATACTCATCGAGTGCTGCTCCGACGACCTGATGGACAGCCTCCTCGCCGCCTTCGACATGACCACCGGCGACATGCGCTTCTGGAGCTAA - >LOC_Os09g11460.2
ATGCGCCGCCGCGTCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCGTCGCCGGCGAGGCATCACAAGGCGCGGCGCAGCAGGAGGAAGCTCGCCGTCGACGAGGACTGGGAGGCCGCCTTCCGCGAGTTCCTCTCCCGCGACCACGACGACGACGACGACGACCACGACGGTCAGCATGTCGTTGTTGCGCCGTTGATCCGTGGTAGTGACAAGTGCGTCCACGGCCACGAGGTGGTGGCGTCGACGGTCGGCGGTGGCGCAAGCGGCGGACGACGACGAGCCGACGACGACGACGGCGAGCGGCGGCGGCGGCGGCGGAGGGAGAAGCGGAGCTACCCGTACCGCGGCATCCGGCAGCGGCCGTGGGGGAGGTGGGCGTCGGAGATCCGCGACCCCGTCAAGGGCATCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGGCGCCGCGCGCGCCTACGACGACGAGGTTCGCCGCATCTACGGCGGCAACGCCAAGACCAACTTCCCCCCATCGCCGCCCACGCCGCCGCCGCCGGAGAAGCCAGCGGCGGAGAGGAGCCCCTCGACGACGCCGACGACGACCACGGAGGACTCCGGCGACTCGCGCATACTCATCGAGTGCTGCTCCGACGACCTGATGGACAGCCTCCTCGCCGCCTTCGACATGACCACCGGCGACATGCGCTTCTGGAGCTAA
Protein Sequence
- >LOC_Os09g11460.1
MRRRVSSSSSSSSSSSPARHHKARRSRRKLAVDEDWEAAFREFLSRDHDDDDDDHDGQHVVVAPLIRGSDKCVHGHEVVASTVGGGASGGRRRADDDDGERRRRRRREKRSYPYRGIRQRPWGRWASEIRDPVKGIRVWLGTFDTAEGAARAYDDEVRRIYGGNAKTNFPPSPPTPPPPEKPAAERSPSTTPTTTTEDSGDSRILIECCSDDLMDSLLAAFDMTTGDMRFWS* - >LOC_Os09g11460.2
MRRRVSSSSSSSSSSSPARHHKARRSRRKLAVDEDWEAAFREFLSRDHDDDDDDHDGQHVVVAPLIRGSDKCVHGHEVVASTVGGGASGGRRRADDDDGERRRRRRREKRSYPYRGIRQRPWGRWASEIRDPVKGIRVWLGTFDTAEGAARAYDDEVRRIYGGNAKTNFPPSPPTPPPPEKPAAERSPSTTPTTTTEDSGDSRILIECCSDDLMDSLLAAFDMTTGDMRFWS*