Gene Details:
- MSU gene ID: LOC_Os09g04890
- RAPdb gene ID: Os09g0134500
- Gene Symbol: OsTrx1 SDG723
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Here, we observed that suppression of Oryza sativa Trithorax1 (OsTrx1), an ortholog of ATX1, delayed flowering time in rice (Oryza sativa).
- Our results suggest that OsTrx1 plays an important role in regulating flowering time in rice by modulating chromatin structure.
- However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in OsTrx1.
- OsHUB2 inhibits function of OsTrx1 in heading date in rice.
- Together, our results (i) reveal that OsHUB2 represses the function of OsTrx1 and H3K4me3 levels at Ehd1 and (ii) suggest that OsHUB2-mediated H2B ubiquitination plays critical roles together with H3K4me3 in rice heading date regulation.
Function-related keywords:
- flowering-time , height , grain-number , flower , grain , heading-date
Literature:
- Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3 . DOI: 10.1104/pp.113.228049 ; PMID: 24420930
- Transcriptional and post-transcriptional regulation of heading date in rice . DOI: 10.1111/nph.17158 ; PMID: 33341945
- OsHUB2 inhibits function of OsTrx1 in heading date in rice . DOI: 10.1111/tpj.15763 ; PMID: 35395113
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g04890.1
AAAAGGAAATCGGGAAATCAATCCCCATCGTCCCCCAAGCCTCCGGGGGCCGACCGGAGTGAGGAGGGGGGCGAGGGGCGTCCTCCGGCGGGAAACGGCAAAAAATTTTCGCGAGGGCCTCAGGGCCCCCAAAACTTCCCTCCCCCGGAACCCCAAATCCCTAAACCCCTCCAGTGGCGAAGCCCTAGAGCCGAAACCCTAGCCAGCCCAGCCATGGTGATCGCGGTGGAGGGGGGCTTCGTGCACGAGGAGGAGGAGGTGGACCACCCAATTCGCTACCTCCCACTTGGCCGCGTCTACTCCTCCTCTGCTCCGTGCCCTCTCCCCAAGAAGCCCCGCTCCGCCGAGGACGGCAAGCCCCCCGTGATCGTCTACTACCGCCGCCGCCGTAAGAAGCCGCGGGTCGAGGGGCCACCTCCCTCGCCTGCCACAGCACCACCGATGCTGCACCCCCGGGAGGACGACGAGGATGAGGAGGTTACACGGCGGAAGGGTTCTCTCAAGTACGAGCTGCTGAGCCTGGGGCAAGCCCCGCCCGCATTAGGCGGGGATGGGGAGGAGCCCGCGCGGCGGCGCTGCCTGAGGCGTAGCGGAGGGGCTGAGAGGAGGGGTTACTTCTCTGAACCCAAGAGGCGGCAGCGGCAGGGCGTGCACAAGGAAGCTGCCTCCTCGGCTGGGAGGAGATGGTTGGAGTTGGAAATTGAGGCTGCGGATCCACTGGCCTTTGTGGGATTAGGATGCAAGGTTTTCTGGCCCCTCGATGAGGATTGGTACAAGGGTTCTATCACAGGGTACAATGAAGCGACTAAGAAACATTCCGTAAAGTATGATGATGGCGAATCAGAGGACCTTAACCTAGCTGATGAAAGGATAAAATTTTCTATTTCATCTGAAGAAATGAAGTGCAGGAACTTGAAATTTGGAATTTCCAATCTGAACAAGAGGGGCTATGATGAGTTGCTTGCCCTTGCTGTTAGCCTTCATGATTACCAAGGTCTTGATCCAGGTGATCTTGTGTGGGCTAAACTTACAGGTCATGCCATGTGGCCAGCTGTTGTGGTGGATGAATCAAATGTTCCTGCTAACAGGGCTTTGAAGCCAGGCCGACTAGATCAGTCGATACTTGTTCAATTCTTTGGTACTCATGATTTTGCCAGGATTAAGTTGAAGCAAGCGGTGCCCTTTCTGAATGGCCTTCTTTCTTCTTTGCATCTTAAATGCAAGCAAGCACGCTTCTATCGGAGTTTAGAAGAAGCCAAGGAGTTTCTCTGCACACAGCTTCTCCCAGAAAATATGTTGCAACTACAGAAATCCATGGAAAAGGGCAGTTCTGATGCTAATTCCAATAAAGATGTACATTCTTGTGACAATTTATCTGAAGATAAAACAGCTGAAAGCGGAGGGGATTATGATGAGATGACTCCAATAGAACTAGGAAATCTTCGTGTGAGCAAATTAGGTAGGATAGTAACTGACTCAGACTATTTCCATAACAAAAAGCATATATGGCCTGAAGGGTATACTGCTTTCAGGAAGTTCAGATCAGTGAAAGATCCACATGTAGTAATACTTTACAAAATGGAGGTACTGAGGAATTCAGATATAAAAGCTCGGCCATTGTTTAGGGTCACATCAGAAGATGGAACACAGATTGATGGCTCTACCCCAAATACATGTTGGAAGGAGATATATTGTAGATTAAAGGAAAAACAGCGCAATGTGGCCTCTGGATTGGACAGAGATGTTTGTCAGGGATCTGGTTCCTATATGTTTGGCTTTTCAAATCCACAAATACGGCAACTTATTCAGGAGTTACCCAATGCAAGGTCATGCTTAAAGTATTTTGAAAATGCTGGAGACACCTTTCGTGGGTATAGAGCTGTTCATGTAAATTGGAAAGATCTAGACTATTGTAGTGTTTGTGATATGGATGAGGAATACGAAGACAATTTGTTCTTGCAATGTGATAAGTGCCGTATGATGGTACATGCTAGATGCTATGGTGAACTCGAACCATTGAATGGAGTCCTTTGGCTTTGCAACCTGTGTCGACCTGAGGCGCCTCGTGTTTCTCCACGATGCTGTCTTTGTCCAGTAACAGGGGGCGCAATGAAACCAACAACAGATGGTCGTTGGGCTCATCTTGCATGTGCTATATGGATTCCTGAAACTTGCTTAAAAGATGTGAAGAGAATGGAACCGATTGATGGATTGAGCAGAATCAACAAGGACCGCTGGAAACTTCTATGCAGCATTTGCGGAGTTGCTTATGGAGCTTGCATACAGTGTTCTCATCCTACCTGTCGTGTTGCATATCACCCTCTTTGTGCACGTGCTGCTGATCTTTGTGTTGAGCTTGAAGATGATGACAAAATCCACCTCATGTTACTTGATGAGGATGAGGACCCATGTATTCGTCTACTTTCATACTGCAAGAAGCACAGACAACCATCGACTGAACGTCCATCTCTTGAAAGTAACCTTGCTAAGCCTGCTGTGGTAGTTCAGACAGATGCAGTTCCACCATCCGGTTGTGCAAGGACTGAACCTTATAATATCCATGGGAGAAGGGGCCAAAAGCAACCTCAAGTTATGGCTACCGCTTCTGTAAAACGTTTATATGTAGAGAATATGCCTTATATTGTTAGTGGTTTCTGCCAAAATAGAGTAGGCCATGATGCTATCAGTGAACCAATTCAATCAGTTGGCTTTTTGGATGTTGCACATCAAGAAGCTGTTGGCAACGTGTCTTCTATGATTGAAAAGTATAAAAGCATGAAGGCTACATTCAGGAGGAGACTAGCTTTTGGAAAGTCAAGAATTCATGGATTTGGTGTCTTTGCAAAGGTTTCGCACAAGGCAGGCGACATGATGATTGAGTACATCGGAGAGCTCGTCAGGCCACCAATATCAGACATTAGAGAGCGGCGCATATACAACTCTTTAGTGGGTGCTGGGACGTACATGTTCAGGATAGATGATGAGCGTGTTATAGATGCTACGCGGGCAGGAAGCATTGCCCATTTAATTAATCATTCTTGTGAGCCGAATTGTTATTCACGCGTCATAAGTGTTCTCGGGGATGAGCATATCATCATTTTTGCAAAGCGGGATATAAATCCATGGGAAGAGTTGACTTATGATTATAGGTTTGTTTCGAGTGATCAGCGACTTCCTTGTTATTGTGGATTCCCAAAATGCCGTGGAGTTGTTAACGATGTTGAAGCAGAGGGGCAATCAGCCAAAATAAGGGTCAATAGAAGTGAATTATTTCAACAATGATCAGACTGAGGGATCGTATTTAGAATTGCCCCAGGGTACTGGATTGCGAACTGTGCTCCTTCGGGGCTAGTGGCAAAATTGCAAAAATTTGCCTCAGTTTTTCATGTGAGAAATGCTAATTATTCTTTGCTCACATTTACACAAGAATGCCATCGTAATTGTACATCTATTCTGACATAGGTCTGGCATTCCATTTGTTATTGGTACCATAATTGGAACTTACTTTGTGGTGGCATAATCAAAATATTCAGATCTTCTCATGTAATTTGTCCATTTGTCATCAGTTATATGTTGGCCCTATCAACCAAATGAGTCGAAA
CDS Sequence
- >LOC_Os09g04890.1
ATGGTGATCGCGGTGGAGGGGGGCTTCGTGCACGAGGAGGAGGAGGTGGACCACCCAATTCGCTACCTCCCACTTGGCCGCGTCTACTCCTCCTCTGCTCCGTGCCCTCTCCCCAAGAAGCCCCGCTCCGCCGAGGACGGCAAGCCCCCCGTGATCGTCTACTACCGCCGCCGCCGTAAGAAGCCGCGGGTCGAGGGGCCACCTCCCTCGCCTGCCACAGCACCACCGATGCTGCACCCCCGGGAGGACGACGAGGATGAGGAGGTTACACGGCGGAAGGGTTCTCTCAAGTACGAGCTGCTGAGCCTGGGGCAAGCCCCGCCCGCATTAGGCGGGGATGGGGAGGAGCCCGCGCGGCGGCGCTGCCTGAGGCGTAGCGGAGGGGCTGAGAGGAGGGGTTACTTCTCTGAACCCAAGAGGCGGCAGCGGCAGGGCGTGCACAAGGAAGCTGCCTCCTCGGCTGGGAGGAGATGGTTGGAGTTGGAAATTGAGGCTGCGGATCCACTGGCCTTTGTGGGATTAGGATGCAAGGTTTTCTGGCCCCTCGATGAGGATTGGTACAAGGGTTCTATCACAGGGTACAATGAAGCGACTAAGAAACATTCCGTAAAGTATGATGATGGCGAATCAGAGGACCTTAACCTAGCTGATGAAAGGATAAAATTTTCTATTTCATCTGAAGAAATGAAGTGCAGGAACTTGAAATTTGGAATTTCCAATCTGAACAAGAGGGGCTATGATGAGTTGCTTGCCCTTGCTGTTAGCCTTCATGATTACCAAGGTCTTGATCCAGGTGATCTTGTGTGGGCTAAACTTACAGGTCATGCCATGTGGCCAGCTGTTGTGGTGGATGAATCAAATGTTCCTGCTAACAGGGCTTTGAAGCCAGGCCGACTAGATCAGTCGATACTTGTTCAATTCTTTGGTACTCATGATTTTGCCAGGATTAAGTTGAAGCAAGCGGTGCCCTTTCTGAATGGCCTTCTTTCTTCTTTGCATCTTAAATGCAAGCAAGCACGCTTCTATCGGAGTTTAGAAGAAGCCAAGGAGTTTCTCTGCACACAGCTTCTCCCAGAAAATATGTTGCAACTACAGAAATCCATGGAAAAGGGCAGTTCTGATGCTAATTCCAATAAAGATGTACATTCTTGTGACAATTTATCTGAAGATAAAACAGCTGAAAGCGGAGGGGATTATGATGAGATGACTCCAATAGAACTAGGAAATCTTCGTGTGAGCAAATTAGGTAGGATAGTAACTGACTCAGACTATTTCCATAACAAAAAGCATATATGGCCTGAAGGGTATACTGCTTTCAGGAAGTTCAGATCAGTGAAAGATCCACATGTAGTAATACTTTACAAAATGGAGGTACTGAGGAATTCAGATATAAAAGCTCGGCCATTGTTTAGGGTCACATCAGAAGATGGAACACAGATTGATGGCTCTACCCCAAATACATGTTGGAAGGAGATATATTGTAGATTAAAGGAAAAACAGCGCAATGTGGCCTCTGGATTGGACAGAGATGTTTGTCAGGGATCTGGTTCCTATATGTTTGGCTTTTCAAATCCACAAATACGGCAACTTATTCAGGAGTTACCCAATGCAAGGTCATGCTTAAAGTATTTTGAAAATGCTGGAGACACCTTTCGTGGGTATAGAGCTGTTCATGTAAATTGGAAAGATCTAGACTATTGTAGTGTTTGTGATATGGATGAGGAATACGAAGACAATTTGTTCTTGCAATGTGATAAGTGCCGTATGATGGTACATGCTAGATGCTATGGTGAACTCGAACCATTGAATGGAGTCCTTTGGCTTTGCAACCTGTGTCGACCTGAGGCGCCTCGTGTTTCTCCACGATGCTGTCTTTGTCCAGTAACAGGGGGCGCAATGAAACCAACAACAGATGGTCGTTGGGCTCATCTTGCATGTGCTATATGGATTCCTGAAACTTGCTTAAAAGATGTGAAGAGAATGGAACCGATTGATGGATTGAGCAGAATCAACAAGGACCGCTGGAAACTTCTATGCAGCATTTGCGGAGTTGCTTATGGAGCTTGCATACAGTGTTCTCATCCTACCTGTCGTGTTGCATATCACCCTCTTTGTGCACGTGCTGCTGATCTTTGTGTTGAGCTTGAAGATGATGACAAAATCCACCTCATGTTACTTGATGAGGATGAGGACCCATGTATTCGTCTACTTTCATACTGCAAGAAGCACAGACAACCATCGACTGAACGTCCATCTCTTGAAAGTAACCTTGCTAAGCCTGCTGTGGTAGTTCAGACAGATGCAGTTCCACCATCCGGTTGTGCAAGGACTGAACCTTATAATATCCATGGGAGAAGGGGCCAAAAGCAACCTCAAGTTATGGCTACCGCTTCTGTAAAACGTTTATATGTAGAGAATATGCCTTATATTGTTAGTGGTTTCTGCCAAAATAGAGTAGGCCATGATGCTATCAGTGAACCAATTCAATCAGTTGGCTTTTTGGATGTTGCACATCAAGAAGCTGTTGGCAACGTGTCTTCTATGATTGAAAAGTATAAAAGCATGAAGGCTACATTCAGGAGGAGACTAGCTTTTGGAAAGTCAAGAATTCATGGATTTGGTGTCTTTGCAAAGGTTTCGCACAAGGCAGGCGACATGATGATTGAGTACATCGGAGAGCTCGTCAGGCCACCAATATCAGACATTAGAGAGCGGCGCATATACAACTCTTTAGTGGGTGCTGGGACGTACATGTTCAGGATAGATGATGAGCGTGTTATAGATGCTACGCGGGCAGGAAGCATTGCCCATTTAATTAATCATTCTTGTGAGCCGAATTGTTATTCACGCGTCATAAGTGTTCTCGGGGATGAGCATATCATCATTTTTGCAAAGCGGGATATAAATCCATGGGAAGAGTTGACTTATGATTATAGGTTTGTTTCGAGTGATCAGCGACTTCCTTGTTATTGTGGATTCCCAAAATGCCGTGGAGTTGTTAACGATGTTGAAGCAGAGGGGCAATCAGCCAAAATAAGGGTCAATAGAAGTGAATTATTTCAACAATGA
Protein Sequence
- >LOC_Os09g04890.1
MVIAVEGGFVHEEEEVDHPIRYLPLGRVYSSSAPCPLPKKPRSAEDGKPPVIVYYRRRRKKPRVEGPPPSPATAPPMLHPREDDEDEEVTRRKGSLKYELLSLGQAPPALGGDGEEPARRRCLRRSGGAERRGYFSEPKRRQRQGVHKEAASSAGRRWLELEIEAADPLAFVGLGCKVFWPLDEDWYKGSITGYNEATKKHSVKYDDGESEDLNLADERIKFSISSEEMKCRNLKFGISNLNKRGYDELLALAVSLHDYQGLDPGDLVWAKLTGHAMWPAVVVDESNVPANRALKPGRLDQSILVQFFGTHDFARIKLKQAVPFLNGLLSSLHLKCKQARFYRSLEEAKEFLCTQLLPENMLQLQKSMEKGSSDANSNKDVHSCDNLSEDKTAESGGDYDEMTPIELGNLRVSKLGRIVTDSDYFHNKKHIWPEGYTAFRKFRSVKDPHVVILYKMEVLRNSDIKARPLFRVTSEDGTQIDGSTPNTCWKEIYCRLKEKQRNVASGLDRDVCQGSGSYMFGFSNPQIRQLIQELPNARSCLKYFENAGDTFRGYRAVHVNWKDLDYCSVCDMDEEYEDNLFLQCDKCRMMVHARCYGELEPLNGVLWLCNLCRPEAPRVSPRCCLCPVTGGAMKPTTDGRWAHLACAIWIPETCLKDVKRMEPIDGLSRINKDRWKLLCSICGVAYGACIQCSHPTCRVAYHPLCARAADLCVELEDDDKIHLMLLDEDEDPCIRLLSYCKKHRQPSTERPSLESNLAKPAVVVQTDAVPPSGCARTEPYNIHGRRGQKQPQVMATASVKRLYVENMPYIVSGFCQNRVGHDAISEPIQSVGFLDVAHQEAVGNVSSMIEKYKSMKATFRRRLAFGKSRIHGFGVFAKVSHKAGDMMIEYIGELVRPPISDIRERRIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVLGDEHIIIFAKRDINPWEELTYDYRFVSSDQRLPCYCGFPKCRGVVNDVEAEGQSAKIRVNRSELFQQ*