Information report for OsTrx1;SDG723
Gene Details
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Functional Descriptions
- Here, we observed that suppression of Oryza sativa Trithorax1 (OsTrx1), an ortholog of ATX1, delayed flowering time in rice (Oryza sativa).
- Our results suggest that OsTrx1 plays an important role in regulating flowering time in rice by modulating chromatin structure.
- However, the Grain number, plant height, and heading date7 (Ghd7) pathway was altered in OsTrx1.
- OsHUB2 inhibits function of OsTrx1 in heading date in rice.
- Together, our results (i) reveal that OsHUB2 represses the function of OsTrx1 and H3K4me3 levels at Ehd1 and (ii) suggest that OsHUB2-mediated H2B ubiquitination plays critical roles together with H3K4me3 in rice heading date regulation.
Functional Keywords
- flowering-time , height , grain-number , flower , grain , heading-date
Literature and News
- Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3 . DOI: 10.1104/pp.113.228049 ; PMID: 24420930
- Transcriptional and post-transcriptional regulation of heading date in rice . DOI: 10.1111/nph.17158 ; PMID: 33341945
- OsHUB2 inhibits function of OsTrx1 in heading date in rice . DOI: 10.1111/tpj.15763 ; PMID: 35395113
Gene Resources
- UniProt: Q6K431
- EMBL: AK065095, AK074022, AP005583
- AlphaFoldDB: Q6K431
- EnsemblPlants: Os09t0134500-02
- Gramene: Os09t0134500-02
- KEGG: dosa:Os09g0134500
- Orthologous matrix: PYIVSGF
- InterPro: IPR000313, IPR001214, IPR001965
- PANTHER: PTHR13793, PTHR13793:SF140
- SUPFAM: SSF57903, SSF63748, SSF82199
- PROSITE: PS01359, PS50016, PS50081
- Gene3D: 2.170.270.10, 2.30.30.140, 3.30.160.360
- OrthoDB: Q6K431
- SWISS-MODEL: Q6K431
- Conserved Domain Database: cd10518, cd15494, cd15662
- eggNOG: KOG1080
Sequences
cDNA Sequence
- >LOC_Os09g04890.1
AAAAGGAAATCGGGAAATCAATCCCCATCGTCCCCCAAGCCTCCGGGGGCCGACCGGAGTGAGGAGGGGGGCGAGGGGCGTCCTCCGGCGGGAAACGGCAAAAAATTTTCGCGAGGGCCTCAGGGCCCCCAAAACTTCCCTCCCCCGGAACCCCAAATCCCTAAACCCCTCCAGTGGCGAAGCCCTAGAGCCGAAACCCTAGCCAGCCCAGCCATGGTGATCGCGGTGGAGGGGGGCTTCGTGCACGAGGAGGAGGAGGTGGACCACCCAATTCGCTACCTCCCACTTGGCCGCGTCTACTCCTCCTCTGCTCCGTGCCCTCTCCCCAAGAAGCCCCGCTCCGCCGAGGACGGCAAGCCCCCCGTGATCGTCTACTACCGCCGCCGCCGTAAGAAGCCGCGGGTCGAGGGGCCACCTCCCTCGCCTGCCACAGCACCACCGATGCTGCACCCCCGGGAGGACGACGAGGATGAGGAGGTTACACGGCGGAAGGGTTCTCTCAAGTACGAGCTGCTGAGCCTGGGGCAAGCCCCGCCCGCATTAGGCGGGGATGGGGAGGAGCCCGCGCGGCGGCGCTGCCTGAGGCGTAGCGGAGGGGCTGAGAGGAGGGGTTACTTCTCTGAACCCAAGAGGCGGCAGCGGCAGGGCGTGCACAAGGAAGCTGCCTCCTCGGCTGGGAGGAGATGGTTGGAGTTGGAAATTGAGGCTGCGGATCCACTGGCCTTTGTGGGATTAGGATGCAAGGTTTTCTGGCCCCTCGATGAGGATTGGTACAAGGGTTCTATCACAGGGTACAATGAAGCGACTAAGAAACATTCCGTAAAGTATGATGATGGCGAATCAGAGGACCTTAACCTAGCTGATGAAAGGATAAAATTTTCTATTTCATCTGAAGAAATGAAGTGCAGGAACTTGAAATTTGGAATTTCCAATCTGAACAAGAGGGGCTATGATGAGTTGCTTGCCCTTGCTGTTAGCCTTCATGATTACCAAGGTCTTGATCCAGGTGATCTTGTGTGGGCTAAACTTACAGGTCATGCCATGTGGCCAGCTGTTGTGGTGGATGAATCAAATGTTCCTGCTAACAGGGCTTTGAAGCCAGGCCGACTAGATCAGTCGATACTTGTTCAATTCTTTGGTACTCATGATTTTGCCAGGATTAAGTTGAAGCAAGCGGTGCCCTTTCTGAATGGCCTTCTTTCTTCTTTGCATCTTAAATGCAAGCAAGCACGCTTCTATCGGAGTTTAGAAGAAGCCAAGGAGTTTCTCTGCACACAGCTTCTCCCAGAAAATATGTTGCAACTACAGAAATCCATGGAAAAGGGCAGTTCTGATGCTAATTCCAATAAAGATGTACATTCTTGTGACAATTTATCTGAAGATAAAACAGCTGAAAGCGGAGGGGATTATGATGAGATGACTCCAATAGAACTAGGAAATCTTCGTGTGAGCAAATTAGGTAGGATAGTAACTGACTCAGACTATTTCCATAACAAAAAGCATATATGGCCTGAAGGGTATACTGCTTTCAGGAAGTTCAGATCAGTGAAAGATCCACATGTAGTAATACTTTACAAAATGGAGGTACTGAGGAATTCAGATATAAAAGCTCGGCCATTGTTTAGGGTCACATCAGAAGATGGAACACAGATTGATGGCTCTACCCCAAATACATGTTGGAAGGAGATATATTGTAGATTAAAGGAAAAACAGCGCAATGTGGCCTCTGGATTGGACAGAGATGTTTGTCAGGGATCTGGTTCCTATATGTTTGGCTTTTCAAATCCACAAATACGGCAACTTATTCAGGAGTTACCCAATGCAAGGTCATGCTTAAAGTATTTTGAAAATGCTGGAGACACCTTTCGTGGGTATAGAGCTGTTCATGTAAATTGGAAAGATCTAGACTATTGTAGTGTTTGTGATATGGATGAGGAATACGAAGACAATTTGTTCTTGCAATGTGATAAGTGCCGTATGATGGTACATGCTAGATGCTATGGTGAACTCGAACCATTGAATGGAGTCCTTTGGCTTTGCAACCTGTGTCGACCTGAGGCGCCTCGTGTTTCTCCACGATGCTGTCTTTGTCCAGTAACAGGGGGCGCAATGAAACCAACAACAGATGGTCGTTGGGCTCATCTTGCATGTGCTATATGGATTCCTGAAACTTGCTTAAAAGATGTGAAGAGAATGGAACCGATTGATGGATTGAGCAGAATCAACAAGGACCGCTGGAAACTTCTATGCAGCATTTGCGGAGTTGCTTATGGAGCTTGCATACAGTGTTCTCATCCTACCTGTCGTGTTGCATATCACCCTCTTTGTGCACGTGCTGCTGATCTTTGTGTTGAGCTTGAAGATGATGACAAAATCCACCTCATGTTACTTGATGAGGATGAGGACCCATGTATTCGTCTACTTTCATACTGCAAGAAGCACAGACAACCATCGACTGAACGTCCATCTCTTGAAAGTAACCTTGCTAAGCCTGCTGTGGTAGTTCAGACAGATGCAGTTCCACCATCCGGTTGTGCAAGGACTGAACCTTATAATATCCATGGGAGAAGGGGCCAAAAGCAACCTCAAGTTATGGCTACCGCTTCTGTAAAACGTTTATATGTAGAGAATATGCCTTATATTGTTAGTGGTTTCTGCCAAAATAGAGTAGGCCATGATGCTATCAGTGAACCAATTCAATCAGTTGGCTTTTTGGATGTTGCACATCAAGAAGCTGTTGGCAACGTGTCTTCTATGATTGAAAAGTATAAAAGCATGAAGGCTACATTCAGGAGGAGACTAGCTTTTGGAAAGTCAAGAATTCATGGATTTGGTGTCTTTGCAAAGGTTTCGCACAAGGCAGGCGACATGATGATTGAGTACATCGGAGAGCTCGTCAGGCCACCAATATCAGACATTAGAGAGCGGCGCATATACAACTCTTTAGTGGGTGCTGGGACGTACATGTTCAGGATAGATGATGAGCGTGTTATAGATGCTACGCGGGCAGGAAGCATTGCCCATTTAATTAATCATTCTTGTGAGCCGAATTGTTATTCACGCGTCATAAGTGTTCTCGGGGATGAGCATATCATCATTTTTGCAAAGCGGGATATAAATCCATGGGAAGAGTTGACTTATGATTATAGGTTTGTTTCGAGTGATCAGCGACTTCCTTGTTATTGTGGATTCCCAAAATGCCGTGGAGTTGTTAACGATGTTGAAGCAGAGGGGCAATCAGCCAAAATAAGGGTCAATAGAAGTGAATTATTTCAACAATGATCAGACTGAGGGATCGTATTTAGAATTGCCCCAGGGTACTGGATTGCGAACTGTGCTCCTTCGGGGCTAGTGGCAAAATTGCAAAAATTTGCCTCAGTTTTTCATGTGAGAAATGCTAATTATTCTTTGCTCACATTTACACAAGAATGCCATCGTAATTGTACATCTATTCTGACATAGGTCTGGCATTCCATTTGTTATTGGTACCATAATTGGAACTTACTTTGTGGTGGCATAATCAAAATATTCAGATCTTCTCATGTAATTTGTCCATTTGTCATCAGTTATATGTTGGCCCTATCAACCAAATGAGTCGAAA
CDS Sequence
- >LOC_Os09g04890.1
ATGGTGATCGCGGTGGAGGGGGGCTTCGTGCACGAGGAGGAGGAGGTGGACCACCCAATTCGCTACCTCCCACTTGGCCGCGTCTACTCCTCCTCTGCTCCGTGCCCTCTCCCCAAGAAGCCCCGCTCCGCCGAGGACGGCAAGCCCCCCGTGATCGTCTACTACCGCCGCCGCCGTAAGAAGCCGCGGGTCGAGGGGCCACCTCCCTCGCCTGCCACAGCACCACCGATGCTGCACCCCCGGGAGGACGACGAGGATGAGGAGGTTACACGGCGGAAGGGTTCTCTCAAGTACGAGCTGCTGAGCCTGGGGCAAGCCCCGCCCGCATTAGGCGGGGATGGGGAGGAGCCCGCGCGGCGGCGCTGCCTGAGGCGTAGCGGAGGGGCTGAGAGGAGGGGTTACTTCTCTGAACCCAAGAGGCGGCAGCGGCAGGGCGTGCACAAGGAAGCTGCCTCCTCGGCTGGGAGGAGATGGTTGGAGTTGGAAATTGAGGCTGCGGATCCACTGGCCTTTGTGGGATTAGGATGCAAGGTTTTCTGGCCCCTCGATGAGGATTGGTACAAGGGTTCTATCACAGGGTACAATGAAGCGACTAAGAAACATTCCGTAAAGTATGATGATGGCGAATCAGAGGACCTTAACCTAGCTGATGAAAGGATAAAATTTTCTATTTCATCTGAAGAAATGAAGTGCAGGAACTTGAAATTTGGAATTTCCAATCTGAACAAGAGGGGCTATGATGAGTTGCTTGCCCTTGCTGTTAGCCTTCATGATTACCAAGGTCTTGATCCAGGTGATCTTGTGTGGGCTAAACTTACAGGTCATGCCATGTGGCCAGCTGTTGTGGTGGATGAATCAAATGTTCCTGCTAACAGGGCTTTGAAGCCAGGCCGACTAGATCAGTCGATACTTGTTCAATTCTTTGGTACTCATGATTTTGCCAGGATTAAGTTGAAGCAAGCGGTGCCCTTTCTGAATGGCCTTCTTTCTTCTTTGCATCTTAAATGCAAGCAAGCACGCTTCTATCGGAGTTTAGAAGAAGCCAAGGAGTTTCTCTGCACACAGCTTCTCCCAGAAAATATGTTGCAACTACAGAAATCCATGGAAAAGGGCAGTTCTGATGCTAATTCCAATAAAGATGTACATTCTTGTGACAATTTATCTGAAGATAAAACAGCTGAAAGCGGAGGGGATTATGATGAGATGACTCCAATAGAACTAGGAAATCTTCGTGTGAGCAAATTAGGTAGGATAGTAACTGACTCAGACTATTTCCATAACAAAAAGCATATATGGCCTGAAGGGTATACTGCTTTCAGGAAGTTCAGATCAGTGAAAGATCCACATGTAGTAATACTTTACAAAATGGAGGTACTGAGGAATTCAGATATAAAAGCTCGGCCATTGTTTAGGGTCACATCAGAAGATGGAACACAGATTGATGGCTCTACCCCAAATACATGTTGGAAGGAGATATATTGTAGATTAAAGGAAAAACAGCGCAATGTGGCCTCTGGATTGGACAGAGATGTTTGTCAGGGATCTGGTTCCTATATGTTTGGCTTTTCAAATCCACAAATACGGCAACTTATTCAGGAGTTACCCAATGCAAGGTCATGCTTAAAGTATTTTGAAAATGCTGGAGACACCTTTCGTGGGTATAGAGCTGTTCATGTAAATTGGAAAGATCTAGACTATTGTAGTGTTTGTGATATGGATGAGGAATACGAAGACAATTTGTTCTTGCAATGTGATAAGTGCCGTATGATGGTACATGCTAGATGCTATGGTGAACTCGAACCATTGAATGGAGTCCTTTGGCTTTGCAACCTGTGTCGACCTGAGGCGCCTCGTGTTTCTCCACGATGCTGTCTTTGTCCAGTAACAGGGGGCGCAATGAAACCAACAACAGATGGTCGTTGGGCTCATCTTGCATGTGCTATATGGATTCCTGAAACTTGCTTAAAAGATGTGAAGAGAATGGAACCGATTGATGGATTGAGCAGAATCAACAAGGACCGCTGGAAACTTCTATGCAGCATTTGCGGAGTTGCTTATGGAGCTTGCATACAGTGTTCTCATCCTACCTGTCGTGTTGCATATCACCCTCTTTGTGCACGTGCTGCTGATCTTTGTGTTGAGCTTGAAGATGATGACAAAATCCACCTCATGTTACTTGATGAGGATGAGGACCCATGTATTCGTCTACTTTCATACTGCAAGAAGCACAGACAACCATCGACTGAACGTCCATCTCTTGAAAGTAACCTTGCTAAGCCTGCTGTGGTAGTTCAGACAGATGCAGTTCCACCATCCGGTTGTGCAAGGACTGAACCTTATAATATCCATGGGAGAAGGGGCCAAAAGCAACCTCAAGTTATGGCTACCGCTTCTGTAAAACGTTTATATGTAGAGAATATGCCTTATATTGTTAGTGGTTTCTGCCAAAATAGAGTAGGCCATGATGCTATCAGTGAACCAATTCAATCAGTTGGCTTTTTGGATGTTGCACATCAAGAAGCTGTTGGCAACGTGTCTTCTATGATTGAAAAGTATAAAAGCATGAAGGCTACATTCAGGAGGAGACTAGCTTTTGGAAAGTCAAGAATTCATGGATTTGGTGTCTTTGCAAAGGTTTCGCACAAGGCAGGCGACATGATGATTGAGTACATCGGAGAGCTCGTCAGGCCACCAATATCAGACATTAGAGAGCGGCGCATATACAACTCTTTAGTGGGTGCTGGGACGTACATGTTCAGGATAGATGATGAGCGTGTTATAGATGCTACGCGGGCAGGAAGCATTGCCCATTTAATTAATCATTCTTGTGAGCCGAATTGTTATTCACGCGTCATAAGTGTTCTCGGGGATGAGCATATCATCATTTTTGCAAAGCGGGATATAAATCCATGGGAAGAGTTGACTTATGATTATAGGTTTGTTTCGAGTGATCAGCGACTTCCTTGTTATTGTGGATTCCCAAAATGCCGTGGAGTTGTTAACGATGTTGAAGCAGAGGGGCAATCAGCCAAAATAAGGGTCAATAGAAGTGAATTATTTCAACAATGA
Protein Sequence
- >LOC_Os09g04890.1
MVIAVEGGFVHEEEEVDHPIRYLPLGRVYSSSAPCPLPKKPRSAEDGKPPVIVYYRRRRKKPRVEGPPPSPATAPPMLHPREDDEDEEVTRRKGSLKYELLSLGQAPPALGGDGEEPARRRCLRRSGGAERRGYFSEPKRRQRQGVHKEAASSAGRRWLELEIEAADPLAFVGLGCKVFWPLDEDWYKGSITGYNEATKKHSVKYDDGESEDLNLADERIKFSISSEEMKCRNLKFGISNLNKRGYDELLALAVSLHDYQGLDPGDLVWAKLTGHAMWPAVVVDESNVPANRALKPGRLDQSILVQFFGTHDFARIKLKQAVPFLNGLLSSLHLKCKQARFYRSLEEAKEFLCTQLLPENMLQLQKSMEKGSSDANSNKDVHSCDNLSEDKTAESGGDYDEMTPIELGNLRVSKLGRIVTDSDYFHNKKHIWPEGYTAFRKFRSVKDPHVVILYKMEVLRNSDIKARPLFRVTSEDGTQIDGSTPNTCWKEIYCRLKEKQRNVASGLDRDVCQGSGSYMFGFSNPQIRQLIQELPNARSCLKYFENAGDTFRGYRAVHVNWKDLDYCSVCDMDEEYEDNLFLQCDKCRMMVHARCYGELEPLNGVLWLCNLCRPEAPRVSPRCCLCPVTGGAMKPTTDGRWAHLACAIWIPETCLKDVKRMEPIDGLSRINKDRWKLLCSICGVAYGACIQCSHPTCRVAYHPLCARAADLCVELEDDDKIHLMLLDEDEDPCIRLLSYCKKHRQPSTERPSLESNLAKPAVVVQTDAVPPSGCARTEPYNIHGRRGQKQPQVMATASVKRLYVENMPYIVSGFCQNRVGHDAISEPIQSVGFLDVAHQEAVGNVSSMIEKYKSMKATFRRRLAFGKSRIHGFGVFAKVSHKAGDMMIEYIGELVRPPISDIRERRIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVLGDEHIIIFAKRDINPWEELTYDYRFVSSDQRLPCYCGFPKCRGVVNDVEAEGQSAKIRVNRSELFQQ*