Information report for OsCOL15
Gene Details
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Functional Descriptions
- Real-time quantitative RT-PCR analysis of flowering regulator gene expression suggested that OsCOL15 suppresses flowering by up-regulating the flowering repressor Grain number, plant height and heading date 7 (Ghd7) and down-regulating the flowering activator Rice Indeterminate 1 (RID1), thus leading to the down-regulation of the flowering activators Early heading date 1, Heading date 3a, and RICE FLOWERING LOCUS T1.
- We determined that OsCOL15 is most highly expressed in young organs and exhibits a diurnal expression pattern typical of other floral regulators.
- These results demonstrate that OsCOL15 is an important floral regulator acting upstream of Ghd7 and RID1 in the rice photoperiodic flowering-time regulatory network.
- Consistent with a function in transcriptional regulation, OsCOL15 localized to the nucleus.
Functional Keywords
- grain , grain-number , floral , nucleus , height , heading-date , plant-height
Literature and News
Gene Resources
- UniProt: Q6Z1G2
- EMBL: AP014964
- AlphaFoldDB: Q6Z1G2
- EnsemblPlants: Os08t0536300-01
- Gramene: Os08t0536300-01
- Orthologous matrix: MIKNFGE
- InterPro: IPR000315, IPR010402, IPR049808
- PANTHER: PTHR31717, PTHR31717:SF45
- PROSITE: PS50119, PS51017
- OrthoDB: Q6Z1G2
- SWISS-MODEL: Q6Z1G2
- Conserved Domain Database: cd19821
- eggNOG: ENOG502QW4H
Sequences
cDNA Sequence
- >LOC_Os08g42440.1
GCTCCGCACCGGATCTCATCTCATTCTCGCCGTCTTCTCTTCTCCACCACCTCGCTGCCTTCTCCCTCCTCCTCATTCCTGCATTGCATTGCTTCCGAGCTCAAAAGTCGTCGTAGACCCCCGCCTCCTTCCTCCTCCTCCTCGCGCTTCGATTTGGTTTGGTTTGATTCGGTTTGCGAGATGAAGGATGGTGGTGGAGGAGGAGGGAGGGGGCAGCAGCAGCAGTGGCCTTGCGACTACTGCGGGGAGGCGGCGGCGGCGCTGCACTGCAGGGCGGACGCCGCGAGGCTGTGCGTCGCCTGCGACCGCCACGTGCACGCCGCCAACGCGCTCTCGCGGAAGCACGTCCGCGCCCCGCTCTGCGCCGCCTGCGCCGCCAGGCCGGCCGCCGCGCGCGTCGCCTCCGCCTCGGCGCCGGCGTTCCTGTGCGCGGACTGCGACACCGGGTGCGGCGGCGACGACGGCGCGGCCTTGCGGGTGCCCGTCGAGGGGTTCTCCGGGTGCCCCGCCGCCGCCGAGCTCGCCGCGTCGTGGGGGCTCGACCTCCCCGGCGGCTGCGGCGGCGAGGAGGAGGAGGCCGACGACGCGTTCTTCTCGGCGCTCGACTACTCCATGCTCGCCGTCGACCCCGTGCTGCGCGACCTCTACGTGCCATGCGACCCGCCCGAGGTGGTGGTGGCCGGCGGCGGGCGGCGACTCAAGGGGGAGGCGCTCGGCCACCAGCTCGCCGAGATGGCGCGCCGGGAGGCCGAGACGGCGCACCCGCACACGCAGCCGCACTCGGATCTGAGCCCCCGCACGCCTCGCCGGACCTCCGCCGCGGCGAGCGGCCGCCTGCAGGAAAAGCAAGCTCCCCCGCCGTTGCCTCATGCTGCTGCGACGGCGGCGCCGCTGCCGTACACTTCACTGCTCATGATGGCGCCGGCCAACTGCACCGAGCTCATGGAAAACAACCGTGTTGGAGACGAAGATGAAAATGTTCTGTGGGAGAGCACCGCGCCATCAGTGCCACCAACCCAGATATGGGATTTTAATTTGGGAAAATCAAGGGATCACAATGAGAACTCTGCACTTGAAGTTGGATTTGGCTCAAACAATGGAGGCTTTATGATTAAGAGTTATAATGACATGCTCAAGGAGATTTCTTCTGGGACAACGAAGGATCTGGAAGATATTTATGACTCAAGATATTTTGCAGCTGCCGAAGATATCATGTCGACTAATGTCTGTCAGCTGTCATCGAAAAATCCAAGCACCAGGAGCAACAAACGGAAGGCGAGCTCATGCGCTTCGACGATCGATGGACCGACAACTTCCACAAGCCATGTACCTGCTGCTTCAGGGGCATTGGGGGGCTCTTCGAACGACAGAGGATCGGCTCTCCCCAAGGAGATTTCCTTCTGTGATCAGACCGTCGTCCCTACCGGAGCCGATCAGAGGCCATGTACCATCAAGATCGACAGCGAGACGCTCGCGCAGAACAGGGACAGCGCGATGCAGCGGTACAGGGAGAAGAAGAAGAACCGCAGGTATGAGAAGCACATCAGGTACGAGTCGAGGAAGCTGAGAGCGGACACGAGGAAGAGGGTGAAAGGCCGGTTTGTGAAGTCGAACGGAGCACCTGATGATGTCAGCAATGGCGGGTGATCTCATCCCTGCAATCCCTGATAGCTAGCTGCAATGTACGTAGCCTGGCTTTTTGACGTTGCAGAGATCGATGTGGCCATATATATGCTGAGAGCTAAGTCTGAAATATGTTGCGTATGTTGTTACAACCTATGCACGCTCTGCTTAAGTCTGTCTGCTGCTGCATGTATTGTTCAGCTAAAATTTTTGCGTCCAAGAGTCGATCTTGATAATTAAGTACCCCTACTACAAATCTACACTACATACTGTAATAGACCTTAGATTTTTTTTCTCATCTCCTCGTAGAAATATATGGCATTTTATATATACGTAAATATGCACAAATAGCCACATTAATTATATATATGCACGAGATCATACTGAAATATGTTTCAGTCTGATTATGATTCTGATATACATATCCATGCATAAATCTCTACCGGCAATAAA
CDS Sequence
- >LOC_Os08g42440.1
ATGAAGGATGGTGGTGGAGGAGGAGGGAGGGGGCAGCAGCAGCAGTGGCCTTGCGACTACTGCGGGGAGGCGGCGGCGGCGCTGCACTGCAGGGCGGACGCCGCGAGGCTGTGCGTCGCCTGCGACCGCCACGTGCACGCCGCCAACGCGCTCTCGCGGAAGCACGTCCGCGCCCCGCTCTGCGCCGCCTGCGCCGCCAGGCCGGCCGCCGCGCGCGTCGCCTCCGCCTCGGCGCCGGCGTTCCTGTGCGCGGACTGCGACACCGGGTGCGGCGGCGACGACGGCGCGGCCTTGCGGGTGCCCGTCGAGGGGTTCTCCGGGTGCCCCGCCGCCGCCGAGCTCGCCGCGTCGTGGGGGCTCGACCTCCCCGGCGGCTGCGGCGGCGAGGAGGAGGAGGCCGACGACGCGTTCTTCTCGGCGCTCGACTACTCCATGCTCGCCGTCGACCCCGTGCTGCGCGACCTCTACGTGCCATGCGACCCGCCCGAGGTGGTGGTGGCCGGCGGCGGGCGGCGACTCAAGGGGGAGGCGCTCGGCCACCAGCTCGCCGAGATGGCGCGCCGGGAGGCCGAGACGGCGCACCCGCACACGCAGCCGCACTCGGATCTGAGCCCCCGCACGCCTCGCCGGACCTCCGCCGCGGCGAGCGGCCGCCTGCAGGAAAAGCAAGCTCCCCCGCCGTTGCCTCATGCTGCTGCGACGGCGGCGCCGCTGCCGTACACTTCACTGCTCATGATGGCGCCGGCCAACTGCACCGAGCTCATGGAAAACAACCGTGTTGGAGACGAAGATGAAAATGTTCTGTGGGAGAGCACCGCGCCATCAGTGCCACCAACCCAGATATGGGATTTTAATTTGGGAAAATCAAGGGATCACAATGAGAACTCTGCACTTGAAGTTGGATTTGGCTCAAACAATGGAGGCTTTATGATTAAGAGTTATAATGACATGCTCAAGGAGATTTCTTCTGGGACAACGAAGGATCTGGAAGATATTTATGACTCAAGATATTTTGCAGCTGCCGAAGATATCATGTCGACTAATGTCTGTCAGCTGTCATCGAAAAATCCAAGCACCAGGAGCAACAAACGGAAGGCGAGCTCATGCGCTTCGACGATCGATGGACCGACAACTTCCACAAGCCATGTACCTGCTGCTTCAGGGGCATTGGGGGGCTCTTCGAACGACAGAGGATCGGCTCTCCCCAAGGAGATTTCCTTCTGTGATCAGACCGTCGTCCCTACCGGAGCCGATCAGAGGCCATGTACCATCAAGATCGACAGCGAGACGCTCGCGCAGAACAGGGACAGCGCGATGCAGCGGTACAGGGAGAAGAAGAAGAACCGCAGGTATGAGAAGCACATCAGGTACGAGTCGAGGAAGCTGAGAGCGGACACGAGGAAGAGGGTGAAAGGCCGGTTTGTGAAGTCGAACGGAGCACCTGATGATGTCAGCAATGGCGGGTGA
Protein Sequence
- >LOC_Os08g42440.1
MKDGGGGGGRGQQQQWPCDYCGEAAAALHCRADAARLCVACDRHVHAANALSRKHVRAPLCAACAARPAAARVASASAPAFLCADCDTGCGGDDGAALRVPVEGFSGCPAAAELAASWGLDLPGGCGGEEEEADDAFFSALDYSMLAVDPVLRDLYVPCDPPEVVVAGGGRRLKGEALGHQLAEMARREAETAHPHTQPHSDLSPRTPRRTSAAASGRLQEKQAPPPLPHAAATAAPLPYTSLLMMAPANCTELMENNRVGDEDENVLWESTAPSVPPTQIWDFNLGKSRDHNENSALEVGFGSNNGGFMIKSYNDMLKEISSGTTKDLEDIYDSRYFAAAEDIMSTNVCQLSSKNPSTRSNKRKASSCASTIDGPTTSTSHVPAASGALGGSSNDRGSALPKEISFCDQTVVPTGADQRPCTIKIDSETLAQNRDSAMQRYREKKKNRRYEKHIRYESRKLRADTRKRVKGRFVKSNGAPDDVSNGG*