Information report for qGW8;OsSPL16
Gene Details
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Functional Descriptions
- We also show that a marker-assisted strategy targeted at elite alleles of GS3 and OsSPL16 underlying grain size and shape can be effectively used to simultaneously improve grain quality and yield.
- Control of grain size, shape and quality by OsSPL16 in rice.
- Programmed Editing of Rice ( Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins.
- Thus, the overall results revealed that CRISPR/Cas9-guided OsSPL16 mutations have the potential to boost the grain yield of rice.
- In this study, we identified three grain shape regulatory genes, GS3, GW8 and GS9, as potential candidate genes for targeted manipulation of grain shape and SER.
Functional Keywords
- grain-quality , grain-size , yield , grain , grain-yield , cell-cycle , grain-shape
Literature and News
- Control of grain size, shape and quality by OsSPL16 in rice . DOI: 10.1038/ng.2327 ; PMID: 22729225
- MiR529a controls plant height, tiller number, panicle architecture and grain size by regulating SPL target genes in rice (Oryza sativa L.) . DOI: 10.1016/j.plantsci.2020.110728 ; PMID: 33288029
- OrMKK3 Influences Morphology and Grain Size in Rice . DOI: 10.1007/s12374-020-09290-2 ; PMID: 33424241
- Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice . DOI: 10.1016/j.jare.2020.08.001 ; PMID: 33364055
- Programmed Editing of Rice (Oryza sativa L.) OsSPL16 Gene Using CRISPR/Cas9 Improves Grain Yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins . DOI: 10.3390/ijms22010249 ; PMID: 33383688
- Natural Variation in OsMKK3 Contributes to Grain Size and Chalkiness in Rice . DOI: 10.3389/fpls.2021.784037 ; PMID: 34899812
- Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice . DOI: 10.1111/pbi.13959 ; PMID: 36342212
Gene Resources
- UniProt: Q6YZE8
- EMBL: AK109469, AP005529, AP008214
- AlphaFoldDB: Q6YZE8
- EnsemblPlants: Os08t0531600-01
- Gramene: Os08t0531600-01
- KEGG: dosa:Os08g0531600
- Orthologous matrix: YTHHQIP
- InterPro: IPR004333, IPR036893, IPR044817
- PANTHER: PTHR31251, PTHR31251:SF33
- SUPFAM: SSF103612
- PROSITE: PS51141
- Gene3D: 4.10.1100.10
- OrthoDB: Q6YZE8
- SWISS-MODEL: Q6YZE8
- eggNOG: ENOG502QRGA
Sequences
cDNA Sequence
- >LOC_Os08g41940.1
ACAGCTCAAGCTTACGCGGGAGCTAAGCTGAGCTACAGCGAGCGGCGGCGGCGGCCATGGAGTGGGATCTCAAGATGCCGCCGGCGGCGAGCTGGGAGCTAGCCGACGAGCTGGAGAACAGCGGCGGCGGGGGTGTACCGGCGGCGGTATCGTCGTCATCGGCTGCGGTTGGTGGCGGCGTCAATGCGGGGGGTGGTGGCAGGCAGGAGTGCTCGGTCGACCTCAAGCTCGGCGGGTTGGGGGAGTTCGGCGGCGGCGGCGCGCAGCCGCGGGTCGCCGTGGCGGGCGAGCCGGCCAAGGGGAAGGGGCCAGCGGCCGCCGCCACGGGAGCAGCAGCAGCAGCGTCGTCGGCGCCGGCGAAGCGGCCGCGCGGTGCGGCGGCGGCGGGGCAGCAGCAGTGCCCGTCGTGCGCGGTGGACGGGTGCAAGGAGGACCTGAGCAAGTGCCGCGACTACCATCGCCGGCACAAGGTGTGCGAGGCCCACTCCAAGACCCCCCTCGTCGTCGTCTCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGGTTTCACTTGCTTCAGGAGTTTGATGAGGCCAAGCGCAGCTGTAGAAAGCGACTAGATGGGCACAACCGTCGCCGCAGGAAGCCACAGCCAGATCCCATGAACTCTGCAAGTTATCTTGCAAGCCAACAAGGGGCAAGATTCTCACCGTTCGCGACGCCGAGACCGGAGGCAAGCTGGACAGGGATGATCAAAACCGAGGAGAGCCCATACTACACGCACCACCAAATCCCTCTTGGCATCAGCAGCAGGCAGCAGCATTTCGTTGGCTCCACCTCTGACGGCGGCCGCCGCTTCCCTTTCCTCCAGGAAGGCGAGATCAGCTTCGGCACCGGCGCCGGCGCCGGCGGCGTGCCAATGGATCAGGCAGCAGCTGCTGCTGCTGCTTCAGTGTGCCAGCCACTTCTGAAGACGGTAGCTCCTCCTCCTCCTCCTCATGGCGGCGGCGGCAGCGGCGGCGGCAAGATGTTCTCCGATGGTGGGTTGACACAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCAGCTCCGGCGAACTCCACGGCCATCGACGTCGGCGGTGGCCGGGTGGTCGTCCAGCCGACCGAGCACATCCCCATGGCGCAGCCTCTCATCTCTGGCCTTCAGTTCGGCGGCGGCGGCGGCAGCTCAGCCTGGTTCGCGGCGCGGCCGCATCATCAGGCGGCCACCGGCGCCGCCGCCACCGCCGTCGTCGTCTCGACGGCCGGTTTCTCCTGCCCGGTGGTGGAGAGCGAGCAGCTGAACACAGTCCTGAGCTCCAATGACAATGAGATGAACTACAATGGGATGTTTCACGTCGGCGGCGAAGGCTCATCGGATGGCACGTCGTCGTCTCTGCCGTTCTCATGGCAGTAGTTTTTTCAGTAACTGTATGTTGCTGCCTTAGTTTCAGTAGAGTTGGTTCTTCATTTCTTTTCAGTGATCAAATTATTGTTTCTGTTCTTTTCTGCCATGGTAAGTTCCTTTTTTTTTTCTTCTTCTTGCCTTCATTTGAGTTAATTACAGCATTGATTTGTGTGAACAAAATTCATCATAAATCAGTTCCTCGCGAGATCATTGGTCTCAACATGATGGTGCCAAGTGAGAACTGCAGTATTGTGCAGTTTTCAGTTTTGAGTCTAAGTTGTATAAACTTGCAG
CDS Sequence
- >LOC_Os08g41940.1
ATGGAGTGGGATCTCAAGATGCCGCCGGCGGCGAGCTGGGAGCTAGCCGACGAGCTGGAGAACAGCGGCGGCGGGGGTGTACCGGCGGCGGTATCGTCGTCATCGGCTGCGGTTGGTGGCGGCGTCAATGCGGGGGGTGGTGGCAGGCAGGAGTGCTCGGTCGACCTCAAGCTCGGCGGGTTGGGGGAGTTCGGCGGCGGCGGCGCGCAGCCGCGGGTCGCCGTGGCGGGCGAGCCGGCCAAGGGGAAGGGGCCAGCGGCCGCCGCCACGGGAGCAGCAGCAGCAGCGTCGTCGGCGCCGGCGAAGCGGCCGCGCGGTGCGGCGGCGGCGGGGCAGCAGCAGTGCCCGTCGTGCGCGGTGGACGGGTGCAAGGAGGACCTGAGCAAGTGCCGCGACTACCATCGCCGGCACAAGGTGTGCGAGGCCCACTCCAAGACCCCCCTCGTCGTCGTCTCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGGTTTCACTTGCTTCAGGAGTTTGATGAGGCCAAGCGCAGCTGTAGAAAGCGACTAGATGGGCACAACCGTCGCCGCAGGAAGCCACAGCCAGATCCCATGAACTCTGCAAGTTATCTTGCAAGCCAACAAGGGGCAAGATTCTCACCGTTCGCGACGCCGAGACCGGAGGCAAGCTGGACAGGGATGATCAAAACCGAGGAGAGCCCATACTACACGCACCACCAAATCCCTCTTGGCATCAGCAGCAGGCAGCAGCATTTCGTTGGCTCCACCTCTGACGGCGGCCGCCGCTTCCCTTTCCTCCAGGAAGGCGAGATCAGCTTCGGCACCGGCGCCGGCGCCGGCGGCGTGCCAATGGATCAGGCAGCAGCTGCTGCTGCTGCTTCAGTGTGCCAGCCACTTCTGAAGACGGTAGCTCCTCCTCCTCCTCCTCATGGCGGCGGCGGCAGCGGCGGCGGCAAGATGTTCTCCGATGGTGGGTTGACACAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCAGCTCCGGCGAACTCCACGGCCATCGACGTCGGCGGTGGCCGGGTGGTCGTCCAGCCGACCGAGCACATCCCCATGGCGCAGCCTCTCATCTCTGGCCTTCAGTTCGGCGGCGGCGGCGGCAGCTCAGCCTGGTTCGCGGCGCGGCCGCATCATCAGGCGGCCACCGGCGCCGCCGCCACCGCCGTCGTCGTCTCGACGGCCGGTTTCTCCTGCCCGGTGGTGGAGAGCGAGCAGCTGAACACAGTCCTGAGCTCCAATGACAATGAGATGAACTACAATGGGATGTTTCACGTCGGCGGCGAAGGCTCATCGGATGGCACGTCGTCGTCTCTGCCGTTCTCATGGCAGTAG
Protein Sequence
- >LOC_Os08g41940.1
MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMNSASYLASQQGARFSPFATPRPEASWTGMIKTEESPYYTHHQIPLGISSRQQHFVGSTSDGGRRFPFLQEGEISFGTGAGAGGVPMDQAAAAAAASVCQPLLKTVAPPPPPHGGGGSGGGKMFSDGGLTQVLDSDCALSLLSAPANSTAIDVGGGRVVVQPTEHIPMAQPLISGLQFGGGGGSSAWFAARPHHQAATGAAATAVVVSTAGFSCPVVESEQLNTVLSSNDNEMNYNGMFHVGGEGSSDGTSSSLPFSWQ*