Gene Details:
- MSU gene ID: LOC_Os08g39250
- RAPdb gene ID: Os08g0502000
- Gene Symbol: OsEDM2L
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD.
- The OsEDM2L knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development.
- Therefore, OsEDM2L is indispensable for proper mRNA m6 A modification in rice anther development.
- OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation.
- Mutation of OsEDM2L altered the transcriptomic m6 A landscape, and caused a distinct m6 A modification of the EAT1 transcript leading to dysregulation of its alternative splicing and polyadenylation, followed by suppression of the EAT1 target genes OsAP25 and OsAP37 for tapetal PCD.
Function-related keywords:
- transcription-factor , development , pollen , anther , cell-death , anther-development , tapetum , tapetal , tapetum-degeneration , pollen-development , PCD , tapetal-programmed-cell-death , programmed-cell-death
Literature:
- OsEDM2L mediates m6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation . DOI: 10.1111/jipb.13167 ; PMID: 34449974
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os08g39250.1
TTCCAAAGGGCGTGGGAGGGCCTTCTTCCCAATAACCGAATATTAATATTTTGCCTGAAACATGATATTGATCCTAAACTTAGAACCCCGACAAGAGATCATATTAAATTTCCTGATAATCCTGCTGTCACGAGAAAGCCCTTCGATGTAAATGGAATGAACAAGAAGGTGGTTAAGATACGGCTTCTTGAGGATTGTCCACCTGCCCCATTGTCCAGTGACAAAAAATCATTTGGTACAGTGAACCGTTTTTCCTCAAGTGATGTGATAACCAAAAAGAGGAAAGTGCTTGTGTCTGGAGGTACAAAACATTGTGCTCTTAGTGCTGTGGCTAGGGAAAAAACATCAGTTCCGTCATTTATCCCCTTGAGCTCATTCCCTGTTATTGATAAAAGCACTGAGAGGAGGATTCATGAGTTCGCACAGAAAGTGTCATCTGATATAACCATTGAGGATATACAAAAAAAGCTAGTGGTTCCATCTACACACACACCGGTTTCGAAGAATACTGATAAGATTACATTGGGAATGGTGCAAAGATCTGTTGAGGCTATAAATGCTGCTCTGCATATGTTAGAAAATGGTGCATCCATAGAAGATGTCAAATCTGTATGTGCACCTAGTGATCTTTTCCAACTTGCAAGGTGGAAGAATAAACTGAATATATATCTTGCACCATTTCTTCATGGCATGCGCTACACATCTTATGGGCGCCACTTCACCAAACTGGACAAACTCGAGCAGATTGTAGATAGGCTACAATGGTATATTGAAAGTGGTGATACGGTTGTTGACTTTTGCTGTGGCTCAAATGATTTTAGCTTATTATTGAAGGAAAAGCTTGAAGCTTCTGAAAAAAGTTGCTTCTATAAAAATTTTGATCTTATTCAACCAAAGAATGACTTCAATTTTGAGAGACGAGACTGGATGACCGTTCAACCAGATGAATTGCCCACAGGATGTCGATTGATCATGGGATTGAATCCTCCGTTTGGGTTTAAAGCTTCTCTTGCTAATCAATTCATTAATAAAGCCCTCACTTTCAAGCCCAAGCTGATCATACTCATTGTTCCTAAGGAAACTGAAAGGCTGGACAGGAAATACCCACCATATGAGCTAATATGGGAGGATTCTCATCAGCTTGCAGGAAAGTCGTTCTATTTGCCTGGGTCGCTTGATGCTGATAACAAGATTATGGAACAATGGAATATGTCACCACCTCCTCTTTCTCTATGGAGCCGTAGTGATTGGGCTCGGAAACACAAGGAAATAGCTAAAACAATGGGGCACATCAGTAAAAATGTGTGGTGCTTAGATGATACTCAAAGGTCTGTTGTAAACACAGGGCATGCACAAATGGCTAATGAGGGGGATGATGACCTTGACAACAAAGAAAGACAAGAAGAGGCACCACTAAATGCCTCTGTTATAGATCAGTTGTTGTCTGACACATACCATGATCCTACTAGCTCGCCAGGGGACTACTGGACAGATACCAATGGAAGATCACGGCAGCCTTGCAACTACGAGGGAAGAAATGATCCAACCCATGAATATCATGCAGGCATGGGTTGTGGATCTGACATGAGCATTTCATCATCTGACAAGAGCGATTGTGAAAAACAAACCGAAACTATGTCAAACTCAGAGCATGGGCATACTGGTTCAGAAGCCCACGATCATGTTGGAAGTGCACCTGTGGAACAACCAACTGGTTTTGCGGATTGTGATGAGGTGACATCAGCTGGCATTGAGTACCATAGCCTGGAAAATTCACCACTCACAGAGAGACCTGCAGATGCAGCTGGAGTTCAATACAAGATGCTGGAAGACACACCACCTCCTCTGGATGAACTCGTACCTGGCTTTTCTGGGCAGCCGATCGTTTCACTTCCTGGAGGAGGCAGGCTTTCAGCTGGGTTGCAATATCAAAGGCTGGAAGACACACTGTCCAGAGGGACACCTGAAGCTGGTGCTGGTTGCAGACAGCTGGAAGATTCACTACCTGCACCCCCTGCTGCTTCTGAGGTCGATGCAGTGGTTGCAAAATATCTGCCACAGACAACGAGTGATCTCCCTGCATTACCGTTCGTTCCTGCTCCAAGAATTCCCTTCCCTGGACTCCAGTTCGCCCCAAGAAATGACTTGTGGCAAGGATGGTACCCACCTCCAGAATTTCTGTCCAGAGGCATGGACCATCCGCCTTTCATGCACGGCTCCTCTGGTTGGCTCGACGACTAGAGGAGTGAGACATTAACCCAAGCCCTAGTAAAGATTACTGACAGCCGCTGTTAGCAAAGACCACTTGTGCAGTTGTGCTTCAACCTGGCGAGGAAGGTGAAAAGGTGAAAACACCAGACTTGGTTCTTCTCTTGTCACGAGCCACCGTGTAGAGTCTGTAGAGTACAGCTACTTGTGCTGTGCCTCGGCCTATCTTTTCAAGGTGCGAGCTTGTTTTGTCCTACGGCCTGCTTTTAGAATACGCTGAGGCTACATGCTACTACCAATTTTCTGGACAGGAAACTTCCAAAACTCTCCTTGCCAATCCACGCCTGTTGATGTACTAGGACGTATTTTGCCTCTTTCCTTGTTGGTTGGTTGGTTGGTTGCACTCTGATGATGTGTGTGTGTTTTTTTTTGGGTCATGGTGGTGGATTGGTGCGCTGCGCCCCTTGTATTTCTCCACAGTTGCCGTTTTGTCTCTAAGCCTAAGGT
CDS Sequence
- >LOC_Os08g39250.1
ATGAACAAGAAGGTGGTTAAGATACGGCTTCTTGAGGATTGTCCACCTGCCCCATTGTCCAGTGACAAAAAATCATTTGGTACAGTGAACCGTTTTTCCTCAAGTGATGTGATAACCAAAAAGAGGAAAGTGCTTGTGTCTGGAGGTACAAAACATTGTGCTCTTAGTGCTGTGGCTAGGGAAAAAACATCAGTTCCGTCATTTATCCCCTTGAGCTCATTCCCTGTTATTGATAAAAGCACTGAGAGGAGGATTCATGAGTTCGCACAGAAAGTGTCATCTGATATAACCATTGAGGATATACAAAAAAAGCTAGTGGTTCCATCTACACACACACCGGTTTCGAAGAATACTGATAAGATTACATTGGGAATGGTGCAAAGATCTGTTGAGGCTATAAATGCTGCTCTGCATATGTTAGAAAATGGTGCATCCATAGAAGATGTCAAATCTGTATGTGCACCTAGTGATCTTTTCCAACTTGCAAGGTGGAAGAATAAACTGAATATATATCTTGCACCATTTCTTCATGGCATGCGCTACACATCTTATGGGCGCCACTTCACCAAACTGGACAAACTCGAGCAGATTGTAGATAGGCTACAATGGTATATTGAAAGTGGTGATACGGTTGTTGACTTTTGCTGTGGCTCAAATGATTTTAGCTTATTATTGAAGGAAAAGCTTGAAGCTTCTGAAAAAAGTTGCTTCTATAAAAATTTTGATCTTATTCAACCAAAGAATGACTTCAATTTTGAGAGACGAGACTGGATGACCGTTCAACCAGATGAATTGCCCACAGGATGTCGATTGATCATGGGATTGAATCCTCCGTTTGGGTTTAAAGCTTCTCTTGCTAATCAATTCATTAATAAAGCCCTCACTTTCAAGCCCAAGCTGATCATACTCATTGTTCCTAAGGAAACTGAAAGGCTGGACAGGAAATACCCACCATATGAGCTAATATGGGAGGATTCTCATCAGCTTGCAGGAAAGTCGTTCTATTTGCCTGGGTCGCTTGATGCTGATAACAAGATTATGGAACAATGGAATATGTCACCACCTCCTCTTTCTCTATGGAGCCGTAGTGATTGGGCTCGGAAACACAAGGAAATAGCTAAAACAATGGGGCACATCAGTAAAAATGTGTGGTGCTTAGATGATACTCAAAGGTCTGTTGTAAACACAGGGCATGCACAAATGGCTAATGAGGGGGATGATGACCTTGACAACAAAGAAAGACAAGAAGAGGCACCACTAAATGCCTCTGTTATAGATCAGTTGTTGTCTGACACATACCATGATCCTACTAGCTCGCCAGGGGACTACTGGACAGATACCAATGGAAGATCACGGCAGCCTTGCAACTACGAGGGAAGAAATGATCCAACCCATGAATATCATGCAGGCATGGGTTGTGGATCTGACATGAGCATTTCATCATCTGACAAGAGCGATTGTGAAAAACAAACCGAAACTATGTCAAACTCAGAGCATGGGCATACTGGTTCAGAAGCCCACGATCATGTTGGAAGTGCACCTGTGGAACAACCAACTGGTTTTGCGGATTGTGATGAGGTGACATCAGCTGGCATTGAGTACCATAGCCTGGAAAATTCACCACTCACAGAGAGACCTGCAGATGCAGCTGGAGTTCAATACAAGATGCTGGAAGACACACCACCTCCTCTGGATGAACTCGTACCTGGCTTTTCTGGGCAGCCGATCGTTTCACTTCCTGGAGGAGGCAGGCTTTCAGCTGGGTTGCAATATCAAAGGCTGGAAGACACACTGTCCAGAGGGACACCTGAAGCTGGTGCTGGTTGCAGACAGCTGGAAGATTCACTACCTGCACCCCCTGCTGCTTCTGAGGTCGATGCAGTGGTTGCAAAATATCTGCCACAGACAACGAGTGATCTCCCTGCATTACCGTTCGTTCCTGCTCCAAGAATTCCCTTCCCTGGACTCCAGTTCGCCCCAAGAAATGACTTGTGGCAAGGATGGTACCCACCTCCAGAATTTCTGTCCAGAGGCATGGACCATCCGCCTTTCATGCACGGCTCCTCTGGTTGGCTCGACGACTAG
Protein Sequence
- >LOC_Os08g39250.1
MNKKVVKIRLLEDCPPAPLSSDKKSFGTVNRFSSSDVITKKRKVLVSGGTKHCALSAVAREKTSVPSFIPLSSFPVIDKSTERRIHEFAQKVSSDITIEDIQKKLVVPSTHTPVSKNTDKITLGMVQRSVEAINAALHMLENGASIEDVKSVCAPSDLFQLARWKNKLNIYLAPFLHGMRYTSYGRHFTKLDKLEQIVDRLQWYIESGDTVVDFCCGSNDFSLLLKEKLEASEKSCFYKNFDLIQPKNDFNFERRDWMTVQPDELPTGCRLIMGLNPPFGFKASLANQFINKALTFKPKLIILIVPKETERLDRKYPPYELIWEDSHQLAGKSFYLPGSLDADNKIMEQWNMSPPPLSLWSRSDWARKHKEIAKTMGHISKNVWCLDDTQRSVVNTGHAQMANEGDDDLDNKERQEEAPLNASVIDQLLSDTYHDPTSSPGDYWTDTNGRSRQPCNYEGRNDPTHEYHAGMGCGSDMSISSSDKSDCEKQTETMSNSEHGHTGSEAHDHVGSAPVEQPTGFADCDEVTSAGIEYHSLENSPLTERPADAAGVQYKMLEDTPPPLDELVPGFSGQPIVSLPGGGRLSAGLQYQRLEDTLSRGTPEAGAGCRQLEDSLPAPPAASEVDAVVAKYLPQTTSDLPALPFVPAPRIPFPGLQFAPRNDLWQGWYPPPEFLSRGMDHPPFMHGSSGWLDD*