Gene Details:

Functional Descriptions:

  • OsEDM2L interacts with the transcription factors bHLH142 and TAPETUM DEGENERATION RETARDATION to regulate the expression of ETERNAL TAPETUM 1 (EAT1), a positive regulator of tapetal PCD.
  • The OsEDM2L knockout mutant showed delayed tapetal programmed cell death (PCD) and defective pollen development.
  • Therefore, OsEDM2L is indispensable for proper mRNA m6 A modification in rice anther development.
  • OsEDM2L mediates m 6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation.
  • Mutation of OsEDM2L altered the transcriptomic m6 A landscape, and caused a distinct m6 A modification of the EAT1 transcript leading to dysregulation of its alternative splicing and polyadenylation, followed by suppression of the EAT1 target genes OsAP25 and OsAP37 for tapetal PCD.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os08g39250.1
    TTCCAAAGGGCGTGGGAGGGCCTTCTTCCCAATAACCGAATATTAATATTTTGCCTGAAACATGATATTGATCCTAAACTTAGAACCCCGACAAGAGATCATATTAAATTTCCTGATAATCCTGCTGTCACGAGAAAGCCCTTCGATGTAAATGGAATGAACAAGAAGGTGGTTAAGATACGGCTTCTTGAGGATTGTCCACCTGCCCCATTGTCCAGTGACAAAAAATCATTTGGTACAGTGAACCGTTTTTCCTCAAGTGATGTGATAACCAAAAAGAGGAAAGTGCTTGTGTCTGGAGGTACAAAACATTGTGCTCTTAGTGCTGTGGCTAGGGAAAAAACATCAGTTCCGTCATTTATCCCCTTGAGCTCATTCCCTGTTATTGATAAAAGCACTGAGAGGAGGATTCATGAGTTCGCACAGAAAGTGTCATCTGATATAACCATTGAGGATATACAAAAAAAGCTAGTGGTTCCATCTACACACACACCGGTTTCGAAGAATACTGATAAGATTACATTGGGAATGGTGCAAAGATCTGTTGAGGCTATAAATGCTGCTCTGCATATGTTAGAAAATGGTGCATCCATAGAAGATGTCAAATCTGTATGTGCACCTAGTGATCTTTTCCAACTTGCAAGGTGGAAGAATAAACTGAATATATATCTTGCACCATTTCTTCATGGCATGCGCTACACATCTTATGGGCGCCACTTCACCAAACTGGACAAACTCGAGCAGATTGTAGATAGGCTACAATGGTATATTGAAAGTGGTGATACGGTTGTTGACTTTTGCTGTGGCTCAAATGATTTTAGCTTATTATTGAAGGAAAAGCTTGAAGCTTCTGAAAAAAGTTGCTTCTATAAAAATTTTGATCTTATTCAACCAAAGAATGACTTCAATTTTGAGAGACGAGACTGGATGACCGTTCAACCAGATGAATTGCCCACAGGATGTCGATTGATCATGGGATTGAATCCTCCGTTTGGGTTTAAAGCTTCTCTTGCTAATCAATTCATTAATAAAGCCCTCACTTTCAAGCCCAAGCTGATCATACTCATTGTTCCTAAGGAAACTGAAAGGCTGGACAGGAAATACCCACCATATGAGCTAATATGGGAGGATTCTCATCAGCTTGCAGGAAAGTCGTTCTATTTGCCTGGGTCGCTTGATGCTGATAACAAGATTATGGAACAATGGAATATGTCACCACCTCCTCTTTCTCTATGGAGCCGTAGTGATTGGGCTCGGAAACACAAGGAAATAGCTAAAACAATGGGGCACATCAGTAAAAATGTGTGGTGCTTAGATGATACTCAAAGGTCTGTTGTAAACACAGGGCATGCACAAATGGCTAATGAGGGGGATGATGACCTTGACAACAAAGAAAGACAAGAAGAGGCACCACTAAATGCCTCTGTTATAGATCAGTTGTTGTCTGACACATACCATGATCCTACTAGCTCGCCAGGGGACTACTGGACAGATACCAATGGAAGATCACGGCAGCCTTGCAACTACGAGGGAAGAAATGATCCAACCCATGAATATCATGCAGGCATGGGTTGTGGATCTGACATGAGCATTTCATCATCTGACAAGAGCGATTGTGAAAAACAAACCGAAACTATGTCAAACTCAGAGCATGGGCATACTGGTTCAGAAGCCCACGATCATGTTGGAAGTGCACCTGTGGAACAACCAACTGGTTTTGCGGATTGTGATGAGGTGACATCAGCTGGCATTGAGTACCATAGCCTGGAAAATTCACCACTCACAGAGAGACCTGCAGATGCAGCTGGAGTTCAATACAAGATGCTGGAAGACACACCACCTCCTCTGGATGAACTCGTACCTGGCTTTTCTGGGCAGCCGATCGTTTCACTTCCTGGAGGAGGCAGGCTTTCAGCTGGGTTGCAATATCAAAGGCTGGAAGACACACTGTCCAGAGGGACACCTGAAGCTGGTGCTGGTTGCAGACAGCTGGAAGATTCACTACCTGCACCCCCTGCTGCTTCTGAGGTCGATGCAGTGGTTGCAAAATATCTGCCACAGACAACGAGTGATCTCCCTGCATTACCGTTCGTTCCTGCTCCAAGAATTCCCTTCCCTGGACTCCAGTTCGCCCCAAGAAATGACTTGTGGCAAGGATGGTACCCACCTCCAGAATTTCTGTCCAGAGGCATGGACCATCCGCCTTTCATGCACGGCTCCTCTGGTTGGCTCGACGACTAGAGGAGTGAGACATTAACCCAAGCCCTAGTAAAGATTACTGACAGCCGCTGTTAGCAAAGACCACTTGTGCAGTTGTGCTTCAACCTGGCGAGGAAGGTGAAAAGGTGAAAACACCAGACTTGGTTCTTCTCTTGTCACGAGCCACCGTGTAGAGTCTGTAGAGTACAGCTACTTGTGCTGTGCCTCGGCCTATCTTTTCAAGGTGCGAGCTTGTTTTGTCCTACGGCCTGCTTTTAGAATACGCTGAGGCTACATGCTACTACCAATTTTCTGGACAGGAAACTTCCAAAACTCTCCTTGCCAATCCACGCCTGTTGATGTACTAGGACGTATTTTGCCTCTTTCCTTGTTGGTTGGTTGGTTGGTTGCACTCTGATGATGTGTGTGTGTTTTTTTTTGGGTCATGGTGGTGGATTGGTGCGCTGCGCCCCTTGTATTTCTCCACAGTTGCCGTTTTGTCTCTAAGCCTAAGGT
CDS Sequence
  • >LOC_Os08g39250.1
    ATGAACAAGAAGGTGGTTAAGATACGGCTTCTTGAGGATTGTCCACCTGCCCCATTGTCCAGTGACAAAAAATCATTTGGTACAGTGAACCGTTTTTCCTCAAGTGATGTGATAACCAAAAAGAGGAAAGTGCTTGTGTCTGGAGGTACAAAACATTGTGCTCTTAGTGCTGTGGCTAGGGAAAAAACATCAGTTCCGTCATTTATCCCCTTGAGCTCATTCCCTGTTATTGATAAAAGCACTGAGAGGAGGATTCATGAGTTCGCACAGAAAGTGTCATCTGATATAACCATTGAGGATATACAAAAAAAGCTAGTGGTTCCATCTACACACACACCGGTTTCGAAGAATACTGATAAGATTACATTGGGAATGGTGCAAAGATCTGTTGAGGCTATAAATGCTGCTCTGCATATGTTAGAAAATGGTGCATCCATAGAAGATGTCAAATCTGTATGTGCACCTAGTGATCTTTTCCAACTTGCAAGGTGGAAGAATAAACTGAATATATATCTTGCACCATTTCTTCATGGCATGCGCTACACATCTTATGGGCGCCACTTCACCAAACTGGACAAACTCGAGCAGATTGTAGATAGGCTACAATGGTATATTGAAAGTGGTGATACGGTTGTTGACTTTTGCTGTGGCTCAAATGATTTTAGCTTATTATTGAAGGAAAAGCTTGAAGCTTCTGAAAAAAGTTGCTTCTATAAAAATTTTGATCTTATTCAACCAAAGAATGACTTCAATTTTGAGAGACGAGACTGGATGACCGTTCAACCAGATGAATTGCCCACAGGATGTCGATTGATCATGGGATTGAATCCTCCGTTTGGGTTTAAAGCTTCTCTTGCTAATCAATTCATTAATAAAGCCCTCACTTTCAAGCCCAAGCTGATCATACTCATTGTTCCTAAGGAAACTGAAAGGCTGGACAGGAAATACCCACCATATGAGCTAATATGGGAGGATTCTCATCAGCTTGCAGGAAAGTCGTTCTATTTGCCTGGGTCGCTTGATGCTGATAACAAGATTATGGAACAATGGAATATGTCACCACCTCCTCTTTCTCTATGGAGCCGTAGTGATTGGGCTCGGAAACACAAGGAAATAGCTAAAACAATGGGGCACATCAGTAAAAATGTGTGGTGCTTAGATGATACTCAAAGGTCTGTTGTAAACACAGGGCATGCACAAATGGCTAATGAGGGGGATGATGACCTTGACAACAAAGAAAGACAAGAAGAGGCACCACTAAATGCCTCTGTTATAGATCAGTTGTTGTCTGACACATACCATGATCCTACTAGCTCGCCAGGGGACTACTGGACAGATACCAATGGAAGATCACGGCAGCCTTGCAACTACGAGGGAAGAAATGATCCAACCCATGAATATCATGCAGGCATGGGTTGTGGATCTGACATGAGCATTTCATCATCTGACAAGAGCGATTGTGAAAAACAAACCGAAACTATGTCAAACTCAGAGCATGGGCATACTGGTTCAGAAGCCCACGATCATGTTGGAAGTGCACCTGTGGAACAACCAACTGGTTTTGCGGATTGTGATGAGGTGACATCAGCTGGCATTGAGTACCATAGCCTGGAAAATTCACCACTCACAGAGAGACCTGCAGATGCAGCTGGAGTTCAATACAAGATGCTGGAAGACACACCACCTCCTCTGGATGAACTCGTACCTGGCTTTTCTGGGCAGCCGATCGTTTCACTTCCTGGAGGAGGCAGGCTTTCAGCTGGGTTGCAATATCAAAGGCTGGAAGACACACTGTCCAGAGGGACACCTGAAGCTGGTGCTGGTTGCAGACAGCTGGAAGATTCACTACCTGCACCCCCTGCTGCTTCTGAGGTCGATGCAGTGGTTGCAAAATATCTGCCACAGACAACGAGTGATCTCCCTGCATTACCGTTCGTTCCTGCTCCAAGAATTCCCTTCCCTGGACTCCAGTTCGCCCCAAGAAATGACTTGTGGCAAGGATGGTACCCACCTCCAGAATTTCTGTCCAGAGGCATGGACCATCCGCCTTTCATGCACGGCTCCTCTGGTTGGCTCGACGACTAG
Protein Sequence
  • >LOC_Os08g39250.1
    MNKKVVKIRLLEDCPPAPLSSDKKSFGTVNRFSSSDVITKKRKVLVSGGTKHCALSAVAREKTSVPSFIPLSSFPVIDKSTERRIHEFAQKVSSDITIEDIQKKLVVPSTHTPVSKNTDKITLGMVQRSVEAINAALHMLENGASIEDVKSVCAPSDLFQLARWKNKLNIYLAPFLHGMRYTSYGRHFTKLDKLEQIVDRLQWYIESGDTVVDFCCGSNDFSLLLKEKLEASEKSCFYKNFDLIQPKNDFNFERRDWMTVQPDELPTGCRLIMGLNPPFGFKASLANQFINKALTFKPKLIILIVPKETERLDRKYPPYELIWEDSHQLAGKSFYLPGSLDADNKIMEQWNMSPPPLSLWSRSDWARKHKEIAKTMGHISKNVWCLDDTQRSVVNTGHAQMANEGDDDLDNKERQEEAPLNASVIDQLLSDTYHDPTSSPGDYWTDTNGRSRQPCNYEGRNDPTHEYHAGMGCGSDMSISSSDKSDCEKQTETMSNSEHGHTGSEAHDHVGSAPVEQPTGFADCDEVTSAGIEYHSLENSPLTERPADAAGVQYKMLEDTPPPLDELVPGFSGQPIVSLPGGGRLSAGLQYQRLEDTLSRGTPEAGAGCRQLEDSLPAPPAASEVDAVVAKYLPQTTSDLPALPFVPAPRIPFPGLQFAPRNDLWQGWYPPPEFLSRGMDHPPFMHGSSGWLDD*