Gene Details:
- MSU gene ID: LOC_Os08g39070
- RAPdb gene ID: Os08g0500000
- Gene Symbol: CSN6
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Collectively, the cellular CSN6 level is decreased during early stages of -Fe to ensure the rapid accumulation of IDEF1, which in turn up-regulates several iron uptake/utilisation-related genes to help overcome -Fe stress in rice.
- Thus, we constructed CSN6 transgenic sense and antisense lines and found that experimental depletion of CSN6 results in accumulation of the IDEF1 protein and up-regulation of several iron uptake/utilisation-related genes.
Function-related keywords:
Literature:
- CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa . DOI: 10.1038/srep25485 ; PMID: 27137867
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os08g39070.1
AAAACCCTCCCCTCTCTCTCTCGCCTCACCACCGCCGTCGTCGTCGCCGCCGCCGCAACCCTCGCCGCCGGCGCTAGGCTCGCGACTCCGACGATGTCGGCGCCATCCGACCCCGCCGTGGCCACCCACCCGCAGGCGGGCGCCGCCGCGGCGGCGTCCTCCAGCAGCGGCCTCACCTTCAAGCTCCACCCCCTCGTCATCGTGAACGTCTCCGACCACCACACCCGCGTGAAGGCCCAGGCGGCGTGCTCCGGCGACGGGGCCTCGTCTGCGGCGGCGGGGGGGCAGCCGCCGAGGGTGTTCGGGTGCGTGATCGGGGTGCAGCGCGGGCGGACGGTGGAGATCTTCAACAGCTTCGAGCTCGTCCTCGACCCTGTCTCCGGGACCCTCGACCGCGCCTTCCTCGAGAAAAAGCAGGAGCTCTATAAGAAGGTTTTCCCCGACTTCTATGTGCTGGGTTGGTACTCCACTGGAAGCGATGTGCGGGACACTGATATGCAAATCCACAAGGCTCTGATGGACATTAACGAAAGTCCCGTTTATCTTCTTTTGAATCCTGCAATCAACCTCTCCCAGAAGGATCTCCCTGTAACAATTTATGAGAGTGAGTTGCATGTTATCGATGGGAGTCCGCAGCTCATCTTTGTCAGAGCTAATTATACAATTGAGACTGTAGAGGCAGAGAGGATATCTGTTGATCATGTTGCCCATCTCAAACCATCTGATGGTGGCTCTGCGGCGACTCAATTGGCTGCTCATCTGACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAATGGAATACAATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAGATTTTCCCCCTTCTGCATCTGCAGCTGGTTCTCTGCTGAGATTTTGGAAATAGTTACCCATATGGCCAGGAAGTTTTTGCGTATAATCTGTTAGGAACTATATCTGGCAGCCATCAAGTTTCTTCCAAACTCATGCTCCCTCGTTCAGGATTGACACGGCAAACATGTTGATATTCTTGATTCTGTGCCTAGATCGTTGTTTATTCCTCATTCGCCAAGATTGACATGTAAAGTTTATCCCCATCACCCCCATGGTAGTTACACTATTTGACTCCCTAAATGGATATGGATGCAGGTTTCCTGAGTTATGCTTGTAAATTTCTTTAGGTTAACTGTATGTATGGCTGTTGGTGTTCACGCAGCTTGAGGTGATGTGATGCGTTATGTATGGCTGTTGGTGTCAACGTAGCTCGAGCTGATTTGATGCGTGATTGACTGATGGTCATGGCAAAATTAAA
CDS Sequence
- >LOC_Os08g39070.1
ATGTCGGCGCCATCCGACCCCGCCGTGGCCACCCACCCGCAGGCGGGCGCCGCCGCGGCGGCGTCCTCCAGCAGCGGCCTCACCTTCAAGCTCCACCCCCTCGTCATCGTGAACGTCTCCGACCACCACACCCGCGTGAAGGCCCAGGCGGCGTGCTCCGGCGACGGGGCCTCGTCTGCGGCGGCGGGGGGGCAGCCGCCGAGGGTGTTCGGGTGCGTGATCGGGGTGCAGCGCGGGCGGACGGTGGAGATCTTCAACAGCTTCGAGCTCGTCCTCGACCCTGTCTCCGGGACCCTCGACCGCGCCTTCCTCGAGAAAAAGCAGGAGCTCTATAAGAAGGTTTTCCCCGACTTCTATGTGCTGGGTTGGTACTCCACTGGAAGCGATGTGCGGGACACTGATATGCAAATCCACAAGGCTCTGATGGACATTAACGAAAGTCCCGTTTATCTTCTTTTGAATCCTGCAATCAACCTCTCCCAGAAGGATCTCCCTGTAACAATTTATGAGAGTGAGTTGCATGTTATCGATGGGAGTCCGCAGCTCATCTTTGTCAGAGCTAATTATACAATTGAGACTGTAGAGGCAGAGAGGATATCTGTTGATCATGTTGCCCATCTCAAACCATCTGATGGTGGCTCTGCGGCGACTCAATTGGCTGCTCATCTGACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAATGGAATACAATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAG
Protein Sequence
- >LOC_Os08g39070.1
MSAPSDPAVATHPQAGAAAAASSSSGLTFKLHPLVIVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEKFNATYERSTARRGGRGAFM*