Information report for CSN6
Gene Details
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Functional Descriptions
- Collectively, the cellular CSN6 level is decreased during early stages of -Fe to ensure the rapid accumulation of IDEF1, which in turn up-regulates several iron uptake/utilisation-related genes to help overcome -Fe stress in rice.
- Thus, we constructed CSN6 transgenic sense and antisense lines and found that experimental depletion of CSN6 results in accumulation of the IDEF1 protein and up-regulation of several iron uptake/utilisation-related genes.
Literature and News
Gene Resources
- UniProt: Q6ZKM2
- EMBL: AK058215, AM234671, AP003873
- AlphaFoldDB: Q6ZKM2
- EnsemblPlants: Os08t0500000-01
- Gramene: Os08t0500000-01
- KEGG: dosa:Os08g0500000, osa:4345944
- Orthologous matrix: LVGWWST
- InterPro: IPR000555, IPR024969, IPR033859
- PANTHER: PTHR10540, PTHR10540:SF8
- PROSITE: PS50249
- Gene3D: 3.40.140.10
- OrthoDB: Q6ZKM2
- SWISS-MODEL: Q6ZKM2
- Conserved Domain Database: cd08063
- eggNOG: KOG3050
Sequences
cDNA Sequence
- >LOC_Os08g39070.1
AAAACCCTCCCCTCTCTCTCTCGCCTCACCACCGCCGTCGTCGTCGCCGCCGCCGCAACCCTCGCCGCCGGCGCTAGGCTCGCGACTCCGACGATGTCGGCGCCATCCGACCCCGCCGTGGCCACCCACCCGCAGGCGGGCGCCGCCGCGGCGGCGTCCTCCAGCAGCGGCCTCACCTTCAAGCTCCACCCCCTCGTCATCGTGAACGTCTCCGACCACCACACCCGCGTGAAGGCCCAGGCGGCGTGCTCCGGCGACGGGGCCTCGTCTGCGGCGGCGGGGGGGCAGCCGCCGAGGGTGTTCGGGTGCGTGATCGGGGTGCAGCGCGGGCGGACGGTGGAGATCTTCAACAGCTTCGAGCTCGTCCTCGACCCTGTCTCCGGGACCCTCGACCGCGCCTTCCTCGAGAAAAAGCAGGAGCTCTATAAGAAGGTTTTCCCCGACTTCTATGTGCTGGGTTGGTACTCCACTGGAAGCGATGTGCGGGACACTGATATGCAAATCCACAAGGCTCTGATGGACATTAACGAAAGTCCCGTTTATCTTCTTTTGAATCCTGCAATCAACCTCTCCCAGAAGGATCTCCCTGTAACAATTTATGAGAGTGAGTTGCATGTTATCGATGGGAGTCCGCAGCTCATCTTTGTCAGAGCTAATTATACAATTGAGACTGTAGAGGCAGAGAGGATATCTGTTGATCATGTTGCCCATCTCAAACCATCTGATGGTGGCTCTGCGGCGACTCAATTGGCTGCTCATCTGACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAATGGAATACAATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAGATTTTCCCCCTTCTGCATCTGCAGCTGGTTCTCTGCTGAGATTTTGGAAATAGTTACCCATATGGCCAGGAAGTTTTTGCGTATAATCTGTTAGGAACTATATCTGGCAGCCATCAAGTTTCTTCCAAACTCATGCTCCCTCGTTCAGGATTGACACGGCAAACATGTTGATATTCTTGATTCTGTGCCTAGATCGTTGTTTATTCCTCATTCGCCAAGATTGACATGTAAAGTTTATCCCCATCACCCCCATGGTAGTTACACTATTTGACTCCCTAAATGGATATGGATGCAGGTTTCCTGAGTTATGCTTGTAAATTTCTTTAGGTTAACTGTATGTATGGCTGTTGGTGTTCACGCAGCTTGAGGTGATGTGATGCGTTATGTATGGCTGTTGGTGTCAACGTAGCTCGAGCTGATTTGATGCGTGATTGACTGATGGTCATGGCAAAATTAAA
CDS Sequence
- >LOC_Os08g39070.1
ATGTCGGCGCCATCCGACCCCGCCGTGGCCACCCACCCGCAGGCGGGCGCCGCCGCGGCGGCGTCCTCCAGCAGCGGCCTCACCTTCAAGCTCCACCCCCTCGTCATCGTGAACGTCTCCGACCACCACACCCGCGTGAAGGCCCAGGCGGCGTGCTCCGGCGACGGGGCCTCGTCTGCGGCGGCGGGGGGGCAGCCGCCGAGGGTGTTCGGGTGCGTGATCGGGGTGCAGCGCGGGCGGACGGTGGAGATCTTCAACAGCTTCGAGCTCGTCCTCGACCCTGTCTCCGGGACCCTCGACCGCGCCTTCCTCGAGAAAAAGCAGGAGCTCTATAAGAAGGTTTTCCCCGACTTCTATGTGCTGGGTTGGTACTCCACTGGAAGCGATGTGCGGGACACTGATATGCAAATCCACAAGGCTCTGATGGACATTAACGAAAGTCCCGTTTATCTTCTTTTGAATCCTGCAATCAACCTCTCCCAGAAGGATCTCCCTGTAACAATTTATGAGAGTGAGTTGCATGTTATCGATGGGAGTCCGCAGCTCATCTTTGTCAGAGCTAATTATACAATTGAGACTGTAGAGGCAGAGAGGATATCTGTTGATCATGTTGCCCATCTCAAACCATCTGATGGTGGCTCTGCGGCGACTCAATTGGCTGCTCATCTGACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAATGGAATACAATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAG
Protein Sequence
- >LOC_Os08g39070.1
MSAPSDPAVATHPQAGAAAAASSSSGLTFKLHPLVIVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEKFNATYERSTARRGGRGAFM*