Information report for RAFTIN1
Gene Details
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Functional Descriptions
Literature and News
- Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses . DOI: 10.1007/s00425-009-0929-z ; PMID: 19363683
- Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development . DOI: 10.1093/mp/ssn028 ; PMID: 19825565
- The classical Ubisch bodies carry a sporophytically produced structural protein (RAFTIN) that is essential for pollen development . DOI: 10.1073/pnas.2231254100 ; PMID: 14612572
Gene Resources
- UniProt: Q7F8U7
- EMBL: AJ575667, AJ575668, AP000364
- AlphaFoldDB: Q7F8U7
- EnsemblPlants: Os08t0496800-01
- Gramene: Os08t0496800-01
- KEGG: dosa:Os08g0496800
- Orthologous matrix: TLRTCEW
- InterPro: IPR004873, IPR044816
- PANTHER: PTHR31236, PTHR31236:SF10
- PROSITE: PS51277
- OrthoDB: Q7F8U7
- SWISS-MODEL: Q7F8U7
- eggNOG: ENOG502QQHP
Homologs
- Capsicum annuum: T459_13832
Sequences
cDNA Sequence
- >LOC_Os08g38810.2
GTCGATCGATCCGTCGCAGTCGTCTCCGGCGAGAAATCGGCTGCGCCCCGTCTCTCTCTCTCTCGAACGCTTCCATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAGGGCTCCAACTCCGGCGACGGCATTGTGAGCTATGCACGATGCATTATGCATCTTTTTATGTATGTTATTCGTGTCAGCTGCTGTAATGTCCACATCTAGAGGGATTATACTACCTGTAATAAATAACAGTTTGTGCCGCTGTGCTTATATTATCACATGAACAAAACTAGCTAGGTGGCCCACCCAATTGCGCGGCTAGCACCTATAC - >LOC_Os08g38810.1
GTCGATCGATCCGTCGCAGTCGTCTCCGGCGAGAAATCGGCTGCGCCCCGTCTCTCTCTCTCTCGAACGCTTCCATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAGGGCTCCAACTCCGGCGACGGCATTGTGAGCTATGCACGATGCATTATGCATCTTTTTATGTATGTTATTCGTGTCAGCTGCTGTAATGTCCACATCTAGAGGGATTATACTACCTGTAATAAATAACAGTTTGTGCCGCTGTGCTTATATTATCACATGAACAAAACTAGCTAGGTGGCCCACCCAATTGCGCGGCTAGCACCTATAC
CDS Sequence
- >LOC_Os08g38810.2
ATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAG - >LOC_Os08g38810.1
ATGGCGCGCTTCCTCCTCCTCCTCGTCGCCGTCGCCGCTGCCGCCGCCGTGCTTTCGCTGGGCGACGCGGCGCCGTCGACGGCCGAGGTGTTCTGGCGCGCCGTGCTGCCGGAATCCCCGTTGCCGGACGCCTTCCTCCGCCTCCTCCGCCCTGACACCAGCTTCGTCGTCGGCAAAGCGGAGGCGGCCGGTGGCGCGGCGCGGACCGGATTCCCCTTCGATTACACTGACTACAGGGGATCTGATTCTCCGACGACGGCGAGTGGTTTGGACCTCGCCGGTGACTTCGGCGAGCCGGCGCCTTTCGGCTACGACTACAGTGCACAGGGCGAAGGCGGCGGCGGCGGCGCCGCCGCCGCCGCGGGAGAGCAGGTTCTTGCCGTCGACGCGGGCTTCAACTACGACAAATACGTCGGCGCGAGGAAGCTCCGCGGCGGCAGCAGCACCGCCGGCGGAGAGAATGATGACGAGCCTTTCGGGTACGACTACAAGGCGCCGAGCAGCGGCAGCGGCACCGCGGCGTCGACGACGGCGCGAGGCGTCGGCACGGGCGCCACGACGACGGTGTTCTTCCACGAGGAGGCGGTGCGCGTCGGCGAGAGGCTCCCGTTCTACTTCCCGGCGGCGACGACGTCGGCGCTGGGCTTCCTGCCGCGCCGCGTCGCGGACTCCATCCCGTTCACGGCGGCCGCGCTGCCGGCCGTCCTCGCGCTGTTCGGCGTCGCGCCGGACACCGCCGAGGCGGCCGGCATGAGGGAGACGCTGCGCACGTGCGAGTGGCCGACCCTCGCCGGCGAGTCCAAGTTCTGCGCCACGTCGCTGGAGGCCCTGGTGGAGGGCGCCATGGCGGCGCTCGGGACACGCGACATCGCCGCGCTGGCGTCGACGCTGCCCCGCGGCGGCGCGCCGCTGCAGGCGTACGCCGTCCGCGCCGTGCTCCCCGTCGAGGGCGCCGGCTTCGTGGCGTGCCACGACCAGGCGTACCCGTACACCGTGTACCGCTGCCACACCACCGGCCCGGCCAGAGCTTACATGGTGGAGATGGAAGGCGACGGCGGCGGCGATGGCGGCGAGGCGGTGACCGTGGCCACCGTGTGCCACACCAACACGTCGCGGTGGAACCCGGAGCACGTCTCGTTCAAGCTCCTCGGCACCAAGCCCGGCGGCTCGCCGGTGTGCCACCTCATGCCGTACGGGCACATCGTCTGGGCCAAGAACGTGAAGAGCTCGACGGCGTAG
Protein Sequence
- >LOC_Os08g38810.2
MARFLLLLVAVAAAAAVLSLGDAAPSTAEVFWRAVLPESPLPDAFLRLLRPDTSFVVGKAEAAGGAARTGFPFDYTDYRGSDSPTTASGLDLAGDFGEPAPFGYDYSAQGEGGGGGAAAAAGEQVLAVDAGFNYDKYVGARKLRGGSSTAGGENDDEPFGYDYKAPSSGSGTAASTTARGVGTGATTTVFFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWAKNVKSSTA* - >LOC_Os08g38810.1
MARFLLLLVAVAAAAAVLSLGDAAPSTAEVFWRAVLPESPLPDAFLRLLRPDTSFVVGKAEAAGGAARTGFPFDYTDYRGSDSPTTASGLDLAGDFGEPAPFGYDYSAQGEGGGGGAAAAAGEQVLAVDAGFNYDKYVGARKLRGGSSTAGGENDDEPFGYDYKAPSSGSGTAASTTARGVGTGATTTVFFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWAKNVKSSTA*