Gene Details:

Functional Descriptions:

  • SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.
  • SCF OsFBK1 mediates turn-over of OsATL53 in cytoplasm and nucleus, while of OsCCR14 in the nucleus as validated by cell-free degradation assays.
  • Currently, we have identified OsATL53, a member of ATL family of RING-H2 proteins interacting with OsCCR14 in cytoplasm.
  • Biochemically, OsATL53 decreases enzymatic activity of OsCCR14 and sequesters it in the cytoplasm thereby regulating the lignification process.
  • Knock-down rice transgenics of OsATL53 display increased lignin deposition in the anthers and roots vis-a-vis wild-type, while those of OsCCR14 have decreased lignin content.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os08g34280.1
    CAGAAGAATCCCAGCTACCAAATCGAACCTACCAACTCATTCCCGATCGATCGATCTTAAAAAAAAACTAATCGTAACTTTTCTCTCTCTCTCCTATCTTTAGAACTAGCAGGTAGCAACTGCTTCGAGTGTAGTCTGGTGAACGTACGATCTTTCGTTCGTTCATCAAGATGACCGTGATCGACGGCGCCGTCGCTGCCGACGCCGGCGGCGCAGCCGCGGCGGTGGTGCAGCCGGGGAACGGGCAGACCGTGTGCGTGACCGGCGCGGCCGGGTACATCGCGTCGTGGCTCGTGAAGCTGCTGCTTGAGAAGGGCTACACTGTCAAGGGCACCGTCAGGAACCCAGATGACCCGAAGAACGCGCACCTGAAGGCGCTCGACGGCGCCGGCGAGCGGCTGGTGCTCTGCAAGGCCGACCTCCTCGACTACGACGCCATCTGCCGCGCCGTCGCCGGCTGCCACGGCGTCTTCCACACCGCCTCCCCCGTCACCGACGACCCCGAGCAGATGGTGGAGCCGGCGGTGAGGGGGACGGAGTACGTGATAAACGCGGCGGCGGAGGCCGGCACGGTGCGGCGGGTGGTGTTCACGTCGTCGATCGGGGCGGTGACCATGGACCCCAACCGCGGGCCCGACGTCGTCGTCGACGAGTCCTGCTGGAGCGACCTTGACTACTGCAAGGAAACCAGGAACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAGGCGGCGCGGCGGCGAGGGGTGGAGCTGGTGGTGGTGAACCCGGTGCTGGTGATCGGGCCGCTGCTGCAGCCGACGGTGAACGCCAGCGTCGCCCACATCCTCAAGTACCTGGACGGCTCGGCCAGCAAGTTCGCCAACGCCGTCCAGGCCTACGTCGACGTCCGCGACGTCGCCGCCGCCCACCTCCTCGTCTTCGAGTCCCCTTCCGCCGCCGGCCGCTTCCTCTGCGCCGAGTCTGTCCTCCACCGCGAGGGTGTCGTCCGCATCCTCGCCAAGCTCTTCCCCGAGTACCCTGTCCCCACCAGGTGCTCCGACGAGAAGAACCCCAGGAAGCAGCCGTACAAGATGTCGAACCAGAAGCTCCGGGACCTGGGGCTGGAGTTCCGGCCGGCGAGCCAGTCGCTGTACGAGACGGTGAAGTGCCTCCAGGAGAAGGGCCACCTGCCGGTGCTCGCCGCCGAGAAGACGGAGGAGGAGGCCGGCGAGGTCCAGGGCGGGATTGCCATCCGAGCATGAGGAAAACAGCAGAGCAAAAGAGCAGGAAAAATGTCCATATCGTGTTAGTGTTTACCGTGCTGTAAAACCAAAGTAGTAGTGTTCGCTGGTTTGTCTGGTCTGAAGCCCTGTAATACACCCCTGTTGTTGTTACATGTGCACCAGAGTGACCGAATAAGTATTTCTATGAAGTTCTCTATGTTCACAACTGATTTGTGCAGAATTTGCTACCAAGACAGCAGGTTGTGAAAACCCACACA
CDS Sequence
  • >LOC_Os08g34280.1
    ATGACCGTGATCGACGGCGCCGTCGCTGCCGACGCCGGCGGCGCAGCCGCGGCGGTGGTGCAGCCGGGGAACGGGCAGACCGTGTGCGTGACCGGCGCGGCCGGGTACATCGCGTCGTGGCTCGTGAAGCTGCTGCTTGAGAAGGGCTACACTGTCAAGGGCACCGTCAGGAACCCAGATGACCCGAAGAACGCGCACCTGAAGGCGCTCGACGGCGCCGGCGAGCGGCTGGTGCTCTGCAAGGCCGACCTCCTCGACTACGACGCCATCTGCCGCGCCGTCGCCGGCTGCCACGGCGTCTTCCACACCGCCTCCCCCGTCACCGACGACCCCGAGCAGATGGTGGAGCCGGCGGTGAGGGGGACGGAGTACGTGATAAACGCGGCGGCGGAGGCCGGCACGGTGCGGCGGGTGGTGTTCACGTCGTCGATCGGGGCGGTGACCATGGACCCCAACCGCGGGCCCGACGTCGTCGTCGACGAGTCCTGCTGGAGCGACCTTGACTACTGCAAGGAAACCAGGAACTGGTACTGCTACGGGAAGGCGGTGGCGGAGCAGGCGGCGTGGGAGGCGGCGCGGCGGCGAGGGGTGGAGCTGGTGGTGGTGAACCCGGTGCTGGTGATCGGGCCGCTGCTGCAGCCGACGGTGAACGCCAGCGTCGCCCACATCCTCAAGTACCTGGACGGCTCGGCCAGCAAGTTCGCCAACGCCGTCCAGGCCTACGTCGACGTCCGCGACGTCGCCGCCGCCCACCTCCTCGTCTTCGAGTCCCCTTCCGCCGCCGGCCGCTTCCTCTGCGCCGAGTCTGTCCTCCACCGCGAGGGTGTCGTCCGCATCCTCGCCAAGCTCTTCCCCGAGTACCCTGTCCCCACCAGGTGCTCCGACGAGAAGAACCCCAGGAAGCAGCCGTACAAGATGTCGAACCAGAAGCTCCGGGACCTGGGGCTGGAGTTCCGGCCGGCGAGCCAGTCGCTGTACGAGACGGTGAAGTGCCTCCAGGAGAAGGGCCACCTGCCGGTGCTCGCCGCCGAGAAGACGGAGGAGGAGGCCGGCGAGGTCCAGGGCGGGATTGCCATCCGAGCATGA
Protein Sequence
  • >LOC_Os08g34280.1
    MTVIDGAVAADAGGAAAAVVQPGNGQTVCVTGAAGYIASWLVKLLLEKGYTVKGTVRNPDDPKNAHLKALDGAGERLVLCKADLLDYDAICRAVAGCHGVFHTASPVTDDPEQMVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLDYCKETRNWYCYGKAVAEQAAWEAARRRGVELVVVNPVLVIGPLLQPTVNASVAHILKYLDGSASKFANAVQAYVDVRDVAAAHLLVFESPSAAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHLPVLAAEKTEEEAGEVQGGIAIRA*