Gene Details:
- MSU gene ID: LOC_Os08g34210
- RAPdb gene ID: Os08g0440800
- Gene Symbol: OsGAPDH
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Plants exposed to drought, submergence and ABA treatment showed an increased accumulation of OsGAPDH transcripts.
- Tissue-specific expression of OsGAPDH indicated that the high level of mRNA was detected in the panicle.
- Cytosolic Oryza sativa glyceraldehyde-3-phosphate dehydrogenase (OsGAPDH), the enzyme involved in the ubiquitous glycolysis, catalyzes the oxidative phosphorylation of glyceraldehyde-3-phosphate to 1,3-biphosphoglycerate (BPG) using nicotinamide adenine dinucleotide (NAD) as an electron acceptor.
- NAD binds to each OsGAPDH subunits with some residues forming positively charged grooves that attract sulfate anions, as a simulation of phosphate groups in the product BPG.
- One of the clones, OsGAPDH, represented a gene that was expressed at high level during 12-h submergence.
- Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.).
Function-related keywords:
Literature:
- Crystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis . DOI: 10.1007/s11103-012-9953-7 ; PMID: 22903596
- Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.) . DOI: 10.1007/s00122-001-0833-9 ; PMID: 12582559
- Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice . DOI: 10.3389/fpls.2020.595439 ; PMID: 33343598
- OsPPR939, a nad5 splicing factor, is essential for plant growth and pollen development in rice . DOI: 10.1007/s00122-020-03742-6 ; PMID: 33386861
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os08g34210.2
GAGAAAAAAAAAGTAAATAAAACGAACAGGACGCGAAGACGAAAACCCCCCTCGCCTCTCGTCTCTTTTCGTGCTCCTCCGAATCCGGTGGGTCCCACCTCCCTCACCACGCGTCCCCGGCCGATCACTTCGCCTCCTCCTCCTCCGCTCTATTAAACCCTCCTTCGGCCACCGCGCCTCCTCCCCTCTCCACCACTCGCGCCCCCATCACCACCCACTCCACTCCCTCCTCCCCCGAGCCCGAGTGCCTCACCGCCACTAGCTAGCAGCAGCGGCGGCGGCGGCGGAGAAGAGGAGGAGATATGGCGGCGGTGGCGGGGACGGGGGTGTTCGCGGAGATCCTGGAGGGGGAGGTGTACAGGTACTACGCCGACGGGGAGTGGCGCGTCTCGGCCTCCGGCAAGTCCGTCGCCATCGTCAACCCCACCACCCGCCTCACCCAGTACAGGGTGCAAGGTGGGTTTCGCTTGCATGCTTGCTGCTCTGAGCTGCTACTACTCTGCTGCTACTGCTGGTGGGATGATTGCCTTCCCGGCTTATAGTTGATCGGCTGGGTGGATATTGGATATGATTGATTGATCGACGATTTGACGGCGACCATCCCTTTCGATATTTACGAAGTTAATTACGGCTAAGTTGATCGGCGCCACTAATTAACTGGAGTAACTGCGTGCGAGCTCGCCTTCTTTAATTCTGATAGCTCCCCTTACCTAATTGGTTTTCCCTTTGGATTCTCAATTGCTCCCTGATTTGGTGACCGGTGAATTTCCCATCTTGTCGGCGCAAGAACATGCCTCGGATTCATCGCCGGCTTCATTCTTGCGGCTGTAATTCGAGTGTTGCTACGAATTGCGAAACGAGTTGACTTTGAACCTGATATCACAATTAGCTGAGAAAATTTGGGGGTCCTTTTGTGTGTCCAGCATGCACCCAGGAGGAGGTGAACAAGGTGATGGAGACGGCGAAGGTGGCGCAGAAGGCGTGGGCGCGCACGCCGCTGTGGAAGCGCGCGGAGCTCCTGCACAAGGCGGCCGCCATCCTCAAGGAGCACAAGACCCCGATTGCAGAGTGCCTCGTCAAGGAGATCGCCAAGCCTGCCAAGGACGCGATCTCTGAAGTGGTGAGGTCAGGGGATTTGGTGTCGTACACAGCTGAGGAGGGTGTTCGGATACTGGGGGAAGGCAAGCTGCTGGTGTCTGATAGCTTCCCGGGCAATGAACGGAACAAGTACTGTTTGAGCTCCAAGGTACCTCTTGGAGTAGTTTTGGCAATCCCACCATTTAACTATCCTGTCAACCTAGCAGTCTCCAAGATTGGCCCAGCACTAATTGCTGGCAATGCTCTTGTTCTGAAGCCTCCAACTCAGGGAGCGGTGGCTGCACTACATATGGTGCACTGCTTCCACCTTGCTGGTTTCCCCAAAGGCTTGATCAATTGTGTCACCGGGAAAGGTTCTGAAATTGGTGATTTTCTTACGATGCATCCTGGAGTCAACTGCATAAGTTTTACGGGAGGTGATACTGGTATAGCCATTTCAAAGAAGGCTGGAATGGTCCCGCTTCAGATGGAACTTGGAGGAAAAGATGCTTGTGTTGTGTTAGAGGATGCAGATCTGGATTTAGTGGCAGCAAATATAGTAAAAGGAGGCTTCTCTTACAGTGGCCAGAGGTGCACTGCTGTGAAAGTGGTGCTGATCATGGAATCCGTTGCTGATATCGTGGTAGAGAAGGTGAAGGCCAAGTTGGCAAAACTGACAGTTGGGCCACCTGAGGCTGACTCTGATATCACCCCAGTTGTAACAGAATCCTCAGCAAATTTTATTGAGGGTTTGGTCATGGATGCCAAGGAGAAAGGAGCAACCTTTTGTCAGGAGTACAGGAGAGAAGGCAACCTTATCTGGCCGTTGCTACTGGATCACGTCCGGCCTGACATGAGGATTGCTTGGGAGGAGCCATTTGGCCCTGTCTTGCCTGTGATTAGGATCAACTCGGTCGAGGAAGGCATCCACCATTGCAATGCCAGCAATTTTGGGCTGCAGGGATGTGTATTCACTAAAGATATCAACAAAGCGATCATGATCAGCGATGCGATGGAGACCGGAACCGTTCAGATCAACTCTGCACCGGCTCGAGGACCTGACCATTTCCCCTTCCAGGGCTTGAAGGACAGTGGGATTGGATCCCAGGGGATAACTAACAGCATAAACATGATGACCAAGGTGAAGAGCACTGTCATAAACCTACCATCTCCATCCTACACCATGGGCTGAGGTGTTCCATATAGATGATCAGATTTCTATAACCACATGAGTACAATGTAGAGAATTCAAATGTTTTGTAACCACGTGAGCTTTGTACGCTATTTGCACCACAGTTCTCCCTGTATGTTGTTGGCTCTTTTACAATTAAGAATAATGCATGTTGAAGTATGAGTCTTCCTGTTTGCTTCTCCTTGATGATGAAACGCTGCTGCATCAACTGATTATTTTTC - >LOC_Os08g34210.1
GAGAAAAAAAAAGTAAATAAAACGAACAGGACGCGAAGACGAAAACCCCCCTCGCCTCTCGTCTCTTTTCGTGCTCCTCCGAATCCGGTGGGTCCCACCTCCCTCACCACGCGTCCCCGGCCGATCACTTCGCCTCCTCCTCCTCCGCTCTATTAAACCCTCCTTCGGCCACCGCGCCTCCTCCCCTCTCCACCACTCGCGCCCCCATCACCACCCACTCCACTCCCTCCTCCCCCGAGCCCGAGTGCCTCACCGCCACTAGCTAGCAGCAGCGGCGGCGGCGGCGGAGAAGAGGAGGAGATATGGCGGCGGTGGCGGGGACGGGGGTGTTCGCGGAGATCCTGGAGGGGGAGGTGTACAGGTACTACGCCGACGGGGAGTGGCGCGTCTCGGCCTCCGGCAAGTCCGTCGCCATCGTCAACCCCACCACCCGCCTCACCCAGTACAGGGTGCAAGGTGGGTTTCGCTTGCATGCTTGCTGCTCTGAGCTGCTACTACTCTGCTGCTACTGCTGGTGGGATGATTGCCTTCCCGGCTTATAGTTGATCGGCTGGGTGGATATTGGATATGATTGATTGATCGACGATTTGACGGCGACCATCCCTTTCGATATTTACGAAGTTAATTACGGCTAAGTTGATCGGCGCCACTAATTAACTGGAGTAACTGCGTGCGAGCTCGCCTTCTTTAATTCTGATAGCTCCCCTTACCTAATTGGTTTTCCCTTTGGATTCTCAATTGCTCCCTGATTTGGTGACCGGTGAATTTCCCATCTTGTCGGCGCAAGAACATGCCTCGGATTCATCGCCGGCTTCATTCTTGCGGCTGTAATTCGAGTGTTGCTACGAATTGCGAAACGAGTTGACTTTGAACCTGATATCACAATTAGCTGAGAAAATTTGGGGGTCCTTTTGTGTGTCCAGCATGCACCCAGGAGGAGGTGAACAAGGTGATGGAGACGGCGAAGGTGGCGCAGAAGGCGTGGGCGCGCACGCCGCTGTGGAAGCGCGCGGAGCTCCTGCACAAGGCGGCCGCCATCCTCAAGGAGCACAAGACCCCGATTGCAGAGTGCCTCGTCAAGGAGATCGCCAAGCCTGCCAAGGACGCGATCTCTGAAGTGGTGAGGTCAGGGGATTTGGTGTCGTACACAGCTGAGGAGGGTGTTCGGATACTGGGGGAAGGCAAGCTGCTGGTGTCTGATAGCTTCCCGGGCAATGAACGGAACAAGTACTGTTTGAGCTCCAAGGTACCTCTTGGAGTAGTTTTGGCAATCCCACCATTTAACTATCCTGTCAACCTAGCAGTCTCCAAGATTGGCCCAGCACTAATTGCTGGCAATGCTCTTGTTCTGAAGCCTCCAACTCAGGGAGCGGTGGCTGCACTACATATGGTGCACTGCTTCCACCTTGCTGGTTTCCCCAAAGGCTTGATCAATTGTGTCACCGGGAAAGGTTCTGAAATTGGTGATTTTCTTACGATGCATCCTGGAGTCAACTGCATAAGTTTTACGGGAGGTGATACTGGTATAGCCATTTCAAAGAAGGCTGGAATGGTCCCGCTTCAGATGGAACTTGGAGGAAAAGATGCTTGTGTTGTGTTAGAGGATGCAGATCTGGATTTAGTGGCAGCAAATATAGTAAAAGGAGGCTTCTCTTACAGTGGCCAGAGGTGCACTGCTGTGAAAGTGGTGCTGATCATGGAATCCGTTGCTGATATCGTGGTAGAGAAGGTGAAGGCCAAGTTGGCAAAACTGACAGTTGGGCCACCTGAGGCTGACTCTGATATCACCCCAGTTGTAACAGAATCCTCAGCAAATTTTATTGAGGGTTTGGTCATGGATGCCAAGGAGAAAGGAGCAACCTTTTGTCAGGAGTACAGGAGAGAAGGCAACCTTATCTGGCCGTTGCTACTGGATCACGTCCGGCCTGACATGAGGATTGCTTGGGAGGAGCCATTTGGCCCTGTCTTGCCTGTGATTAGGATCAACTCGGTCGAGGAAGGCATCCACCATTGCAATGCCAGCAATTTTGGGCTGCAGGGATGTGTATTCACTAAAGATATCAACAAAGCGATCATGATCAGCGATGCGATGGAGACCGGAACCGTTCAGATCAACTCTGCACCGGCTCGAGGACCTGACCATTTCCCCTTCCAGGGCTTGAAGGACAGTGGGATTGGATCCCAGGGGATAACTAACAGCATAAACATGATGACCAAGGTGAAGAGCACTGTCATAAACCTACCATCTCCATCCTACACCATGGGCTGAGGTGTTCCATATAGATGATCAGATTTCTATAACCACATGAGTACAATGTAGAGAATTCAAATGTTTTGTAACCACGTGAGCTTTGTACGCTATTTGCACCACAGTTCTCCCTGTATGTTGTTGGCTCTTTTACAATTAAGAATAATGCATGTTGAAGTATGAGTCTTCCTGTTTGCTTCTCCTTGATGATGAAACGCTGCTGCATCAACTGATTATTTTTC
CDS Sequence
- >LOC_Os08g34210.2
ATGGAGACGGCGAAGGTGGCGCAGAAGGCGTGGGCGCGCACGCCGCTGTGGAAGCGCGCGGAGCTCCTGCACAAGGCGGCCGCCATCCTCAAGGAGCACAAGACCCCGATTGCAGAGTGCCTCGTCAAGGAGATCGCCAAGCCTGCCAAGGACGCGATCTCTGAAGTGGTGAGGTCAGGGGATTTGGTGTCGTACACAGCTGAGGAGGGTGTTCGGATACTGGGGGAAGGCAAGCTGCTGGTGTCTGATAGCTTCCCGGGCAATGAACGGAACAAGTACTGTTTGAGCTCCAAGGTACCTCTTGGAGTAGTTTTGGCAATCCCACCATTTAACTATCCTGTCAACCTAGCAGTCTCCAAGATTGGCCCAGCACTAATTGCTGGCAATGCTCTTGTTCTGAAGCCTCCAACTCAGGGAGCGGTGGCTGCACTACATATGGTGCACTGCTTCCACCTTGCTGGTTTCCCCAAAGGCTTGATCAATTGTGTCACCGGGAAAGGTTCTGAAATTGGTGATTTTCTTACGATGCATCCTGGAGTCAACTGCATAAGTTTTACGGGAGGTGATACTGGTATAGCCATTTCAAAGAAGGCTGGAATGGTCCCGCTTCAGATGGAACTTGGAGGAAAAGATGCTTGTGTTGTGTTAGAGGATGCAGATCTGGATTTAGTGGCAGCAAATATAGTAAAAGGAGGCTTCTCTTACAGTGGCCAGAGGTGCACTGCTGTGAAAGTGGTGCTGATCATGGAATCCGTTGCTGATATCGTGGTAGAGAAGGTGAAGGCCAAGTTGGCAAAACTGACAGTTGGGCCACCTGAGGCTGACTCTGATATCACCCCAGTTGTAACAGAATCCTCAGCAAATTTTATTGAGGGTTTGGTCATGGATGCCAAGGAGAAAGGAGCAACCTTTTGTCAGGAGTACAGGAGAGAAGGCAACCTTATCTGGCCGTTGCTACTGGATCACGTCCGGCCTGACATGAGGATTGCTTGGGAGGAGCCATTTGGCCCTGTCTTGCCTGTGATTAGGATCAACTCGGTCGAGGAAGGCATCCACCATTGCAATGCCAGCAATTTTGGGCTGCAGGGATGTGTATTCACTAAAGATATCAACAAAGCGATCATGATCAGCGATGCGATGGAGACCGGAACCGTTCAGATCAACTCTGCACCGGCTCGAGGACCTGACCATTTCCCCTTCCAGGGCTTGAAGGACAGTGGGATTGGATCCCAGGGGATAACTAACAGCATAAACATGATGACCAAGGTGAAGAGCACTGTCATAAACCTACCATCTCCATCCTACACCATGGGCTGA - >LOC_Os08g34210.1
ATGGAGACGGCGAAGGTGGCGCAGAAGGCGTGGGCGCGCACGCCGCTGTGGAAGCGCGCGGAGCTCCTGCACAAGGCGGCCGCCATCCTCAAGGAGCACAAGACCCCGATTGCAGAGTGCCTCGTCAAGGAGATCGCCAAGCCTGCCAAGGACGCGATCTCTGAAGTGGTGAGGTCAGGGGATTTGGTGTCGTACACAGCTGAGGAGGGTGTTCGGATACTGGGGGAAGGCAAGCTGCTGGTGTCTGATAGCTTCCCGGGCAATGAACGGAACAAGTACTGTTTGAGCTCCAAGGTACCTCTTGGAGTAGTTTTGGCAATCCCACCATTTAACTATCCTGTCAACCTAGCAGTCTCCAAGATTGGCCCAGCACTAATTGCTGGCAATGCTCTTGTTCTGAAGCCTCCAACTCAGGGAGCGGTGGCTGCACTACATATGGTGCACTGCTTCCACCTTGCTGGTTTCCCCAAAGGCTTGATCAATTGTGTCACCGGGAAAGGTTCTGAAATTGGTGATTTTCTTACGATGCATCCTGGAGTCAACTGCATAAGTTTTACGGGAGGTGATACTGGTATAGCCATTTCAAAGAAGGCTGGAATGGTCCCGCTTCAGATGGAACTTGGAGGAAAAGATGCTTGTGTTGTGTTAGAGGATGCAGATCTGGATTTAGTGGCAGCAAATATAGTAAAAGGAGGCTTCTCTTACAGTGGCCAGAGGTGCACTGCTGTGAAAGTGGTGCTGATCATGGAATCCGTTGCTGATATCGTGGTAGAGAAGGTGAAGGCCAAGTTGGCAAAACTGACAGTTGGGCCACCTGAGGCTGACTCTGATATCACCCCAGTTGTAACAGAATCCTCAGCAAATTTTATTGAGGGTTTGGTCATGGATGCCAAGGAGAAAGGAGCAACCTTTTGTCAGGAGTACAGGAGAGAAGGCAACCTTATCTGGCCGTTGCTACTGGATCACGTCCGGCCTGACATGAGGATTGCTTGGGAGGAGCCATTTGGCCCTGTCTTGCCTGTGATTAGGATCAACTCGGTCGAGGAAGGCATCCACCATTGCAATGCCAGCAATTTTGGGCTGCAGGGATGTGTATTCACTAAAGATATCAACAAAGCGATCATGATCAGCGATGCGATGGAGACCGGAACCGTTCAGATCAACTCTGCACCGGCTCGAGGACCTGACCATTTCCCCTTCCAGGGCTTGAAGGACAGTGGGATTGGATCCCAGGGGATAACTAACAGCATAAACATGATGACCAAGGTGAAGAGCACTGTCATAAACCTACCATCTCCATCCTACACCATGGGCTGA
Protein Sequence
- >LOC_Os08g34210.2
METAKVAQKAWARTPLWKRAELLHKAAAILKEHKTPIAECLVKEIAKPAKDAISEVVRSGDLVSYTAEEGVRILGEGKLLVSDSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAVSKIGPALIAGNALVLKPPTQGAVAALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMVPLQMELGGKDACVVLEDADLDLVAANIVKGGFSYSGQRCTAVKVVLIMESVADIVVEKVKAKLAKLTVGPPEADSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAIMISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVKSTVINLPSPSYTMG* - >LOC_Os08g34210.1
METAKVAQKAWARTPLWKRAELLHKAAAILKEHKTPIAECLVKEIAKPAKDAISEVVRSGDLVSYTAEEGVRILGEGKLLVSDSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAVSKIGPALIAGNALVLKPPTQGAVAALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMVPLQMELGGKDACVVLEDADLDLVAANIVKGGFSYSGQRCTAVKVVLIMESVADIVVEKVKAKLAKLTVGPPEADSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAIMISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVKSTVINLPSPSYTMG*