Information report for OsRAD21-3
Gene Details
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Functional Descriptions
- OsRAD21-3-deficient RNAi lines showed arrested pollen mitosis, aberrant pollen chromosome segregation and aborted pollen grains, which led to disrupted pollen viability.
- However, male meiosis in these RNAi lines did not appear to be severely disrupted, which suggests that the main involvement of OsRAD21-3 is in post-meiotic pollen development by affecting pollen mitosis.
- Furthermore, of the four OsRAD21 genes in the rice genome, only OsRAD21-3 was expressed in pollen grains.
- OsRAD21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa.
- OsRAD21-3 transcript and protein accumulated preferentially in flowers, with low levels in vegetative tissues.
Literature and News
Gene Resources
- UniProt: B9FZZ6
- EMBL: AP006064, AP008214, CM000145
- EnsemblPlants: Os08t0266700-01
- Gramene: Os08t0266700-01
- KEGG: dosa:Os08g0266700, osa:4345123
- Orthologous matrix: QQEEPYG
- InterPro: IPR006909, IPR006910, IPR023093
- PANTHER: PTHR12585, PTHR12585:SF55
- SUPFAM: SSF46785
- Gene3D: 1.10.10.580
- OrthoDB: B9FZZ6
- SWISS-MODEL: B9FZZ6
- Conserved Domain Database: cd21793
Homologs
- Daucus carota: DCAR_011837
Sequences
cDNA Sequence
- >LOC_Os08g16610.1
TTCCCCCCCCAAATCTCATCTCATCTCATCCCCCTCCCCTCCCTCTCCGTGCGCCGCCACCACCACCGCCACCGCCGCCGCCGCAGGAGCAACCCCGAGGAGACGGAGGAGGGAGGAGGCAGCCGACGCCGCCGCGATGTTCTACTCGCACACGATCCTTGCGCGGAAGAGCCCACTGGGCACGGTGTGGATCGCCGCCCACCTCGAGCGCAAGATCAAGAAGCCGCAGATCGACGGCATCGACATCCCCTCCTACGCCGAATTTATCATGTTCCCTGAAGTTCCAATTGCTCTGAGGTTGTCAGGGCATCTTCTTCTAGGTCTAGTTCGCATTTATTCATGGAAGGTAAACTACCTCTTCCATGACTGTAACCGGATGCTAAGCACAATCAGAACCGCCTTCGCTTCTGTACAAGTAGATCTGCCCCTTCATGCGGATCATGCGCCTTTTGACACCATCACATTGCCTGATACATTCCGTCTTGATGACATAAACCTAGATGATGCAATTCGTCTGATAGATACGCCAGATAATCATCGGAAGAGTCTGGACCAGATCACCCTGGCTGAAGGAGACTATCTGATGATTGATCTTGATGAGGATGCTAGAGTAGAGCTATCAGCTCCTGGACAATCTTCACACATGGGACCTGAACCAACTGACGAAGAGAGATTGCCTCCATTTCACATCGATTTTGGGCCAAGTGACAATATGGATGAGGAAATTTCCGTAGATCCTTCCCAAGGCAACAACTCGGAGGCAGTGAACACCAGTAACATAAATCAGGCAGATAAAGCACCAGATTTACCTGAAATAATGCGTGAAGCACCATTTGAGGGCCCTGAACTTAACTTGCCAGATATTGATGAGGTAAACAATGATCCCATGGATGTGACTGAGGAATCTTCACCATTTGTGTCCAAGAATATCACCCCTCCGGCACTGGAACGAACTATATCCCCTGGTCAAGGTGGATTATCTGGGACATCCATTCCCAATGCACGAGGAAGTACAAGCACCACATATGACAATATAGAAGATGTTATACCAATGGATATTGGAATGCCTGATTTTAGGATTGAACCATCTCCACCTCGAGTACAAGATGAGATGAATGCACAACCAGTACAAGGTGAGATAAACGCACAACCAGTACAAGATGAGATGAACGCACAACCAGTACAAGATGAGATGAATGCACACCCAGCACAAGATAAGAGGAGAATTAGATATGACAATGAAATAGTGTTCTCCAATGCTTATATGAAGAGACAAATTGATGGCGGTGAACTACATCGTCTGGTCAGCAAGAGGAGGAAACTGCCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCCAAAAGGATGGTTTCTTGCTTGATCCTTTGGTCCATGGGATGTGCGCTACCCTACGTCAAACCTACGAGAGAACCTTCCCCCATGTGATTGACCCTGAAGCTGAGTCAGGATCTGTCGAGCATACTCCTGGGGTAGCTAATGACAGTATTCAGGATACACATGATCATCAACTCTCCCCGAAGTCTCCTGGAAACACAGATGCACAACCTGAACATCAGTTCAATCAACAAGCTCCAAGAAATTCAGATGGACAACCTGAACCTGAGCTTAACCCAAAGTCTCCTGTAAATGCAGAGGCACAACCTGAATCTCAGATTAATCCACAATCTCCAAGAAATGCGGATGGACAGCCTGAACCTGAGCTCAACCCAAAGTCTCCAGGCGAAGCAGGCACGTCACACTTTGATGATATGCCTGAGATCCCTCGATTCTCGCCACAAAATATTCCATCTCCAATAAGAGACGACAATTCTCCTTTCAAAACTCCTGGTGCTGGTGGAACTCCGAAATCAAGACTTGGAGAAACTCCTGCCTCTGGGACACCAGCAGATATGAGTTACATGTCACCTGGACAAGACTCTGATCCTCAAGTTTCTCCTTTTCCATTTAATGATGAACTTGATGGAGATTTGCCCGAGATTCCTAGCCTCATGAGTACTCCTGGAGTAATATCTACCGCAGGTACTGGCACCACAGGATTGGGAAGCATGTCTGCTAGGACAAGGGCTGTGGCACAGTACTTCAAAGATCAAATGGCTTCGGCTACATCAGATGACCAACCTGGTAAATTTATCTTGAACAGAATCTTGGAAGGGAGACACAGGAAACAAGCTGCACGCATGTTTTTTGAAACACTGGTTCTAAAGAGTTATGATTATATTGATGTTGAACAAGAAGCAGCCTATGGTGATATAGCAGTTTCAGTTAAACCCTCACTCTCAGGAGCCAAATTTTGACCAATTCAGTTGCTTAGAACCACATATAATCTCATTTGATCCGCGGGAAGGAGCTTTGGTGGGATTTGCAGAAATGGCCTGAACAATGGATTCTTATATGCGACATGGCTGGCTAATCTACTGCAATTTGCTGGACTCCAATTACTAGAACAAGTAGGCACTCCATGCCATTTAGGTTTATGTTGCAGAATACTGTAGTTGTAAAGCTGTAGCATTAGTAGTTGTCGAAAGCCAATACATCTTGTCCAGTTAGGACTTCAGATGGTAGTCCTTGCCTATGCTTTCTTGGCAGAAAGCAAAGTGAACAAGGAATCAGATGAAGATAAGAATTTTTCTTACTTTTGCTGTTTAATTACATGGTAGTGATATGTTAAATACAAGTCGAAAAATGTTGGATGACTAGCATAAGACAATTTTATAAATGTCAGTGTACATAGTCTGATATCTTCAGTGTGCCAGAGCGCAGAGTCTGTTCAGAAAATTTTCATGCAATATGTGTTCTGCAATGCACCATTATTTGTTGTATTTGTCTG
CDS Sequence
- >LOC_Os08g16610.1
ATGTTCTACTCGCACACGATCCTTGCGCGGAAGAGCCCACTGGGCACGGTGTGGATCGCCGCCCACCTCGAGCGCAAGATCAAGAAGCCGCAGATCGACGGCATCGACATCCCCTCCTACGCCGAATTTATCATGTTCCCTGAAGTTCCAATTGCTCTGAGGTTGTCAGGGCATCTTCTTCTAGGTCTAGTTCGCATTTATTCATGGAAGGTAAACTACCTCTTCCATGACTGTAACCGGATGCTAAGCACAATCAGAACCGCCTTCGCTTCTGTACAAGTAGATCTGCCCCTTCATGCGGATCATGCGCCTTTTGACACCATCACATTGCCTGATACATTCCGTCTTGATGACATAAACCTAGATGATGCAATTCGTCTGATAGATACGCCAGATAATCATCGGAAGAGTCTGGACCAGATCACCCTGGCTGAAGGAGACTATCTGATGATTGATCTTGATGAGGATGCTAGAGTAGAGCTATCAGCTCCTGGACAATCTTCACACATGGGACCTGAACCAACTGACGAAGAGAGATTGCCTCCATTTCACATCGATTTTGGGCCAAGTGACAATATGGATGAGGAAATTTCCGTAGATCCTTCCCAAGGCAACAACTCGGAGGCAGTGAACACCAGTAACATAAATCAGGCAGATAAAGCACCAGATTTACCTGAAATAATGCGTGAAGCACCATTTGAGGGCCCTGAACTTAACTTGCCAGATATTGATGAGGTAAACAATGATCCCATGGATGTGACTGAGGAATCTTCACCATTTGTGTCCAAGAATATCACCCCTCCGGCACTGGAACGAACTATATCCCCTGGTCAAGGTGGATTATCTGGGACATCCATTCCCAATGCACGAGGAAGTACAAGCACCACATATGACAATATAGAAGATGTTATACCAATGGATATTGGAATGCCTGATTTTAGGATTGAACCATCTCCACCTCGAGTACAAGATGAGATGAATGCACAACCAGTACAAGGTGAGATAAACGCACAACCAGTACAAGATGAGATGAACGCACAACCAGTACAAGATGAGATGAATGCACACCCAGCACAAGATAAGAGGAGAATTAGATATGACAATGAAATAGTGTTCTCCAATGCTTATATGAAGAGACAAATTGATGGCGGTGAACTACATCGTCTGGTCAGCAAGAGGAGGAAACTGCCTCAAGCAGCGGTGGATGTGTGGAAATTCAACAGGATTCGCCAAAAGGATGGTTTCTTGCTTGATCCTTTGGTCCATGGGATGTGCGCTACCCTACGTCAAACCTACGAGAGAACCTTCCCCCATGTGATTGACCCTGAAGCTGAGTCAGGATCTGTCGAGCATACTCCTGGGGTAGCTAATGACAGTATTCAGGATACACATGATCATCAACTCTCCCCGAAGTCTCCTGGAAACACAGATGCACAACCTGAACATCAGTTCAATCAACAAGCTCCAAGAAATTCAGATGGACAACCTGAACCTGAGCTTAACCCAAAGTCTCCTGTAAATGCAGAGGCACAACCTGAATCTCAGATTAATCCACAATCTCCAAGAAATGCGGATGGACAGCCTGAACCTGAGCTCAACCCAAAGTCTCCAGGCGAAGCAGGCACGTCACACTTTGATGATATGCCTGAGATCCCTCGATTCTCGCCACAAAATATTCCATCTCCAATAAGAGACGACAATTCTCCTTTCAAAACTCCTGGTGCTGGTGGAACTCCGAAATCAAGACTTGGAGAAACTCCTGCCTCTGGGACACCAGCAGATATGAGTTACATGTCACCTGGACAAGACTCTGATCCTCAAGTTTCTCCTTTTCCATTTAATGATGAACTTGATGGAGATTTGCCCGAGATTCCTAGCCTCATGAGTACTCCTGGAGTAATATCTACCGCAGGTACTGGCACCACAGGATTGGGAAGCATGTCTGCTAGGACAAGGGCTGTGGCACAGTACTTCAAAGATCAAATGGCTTCGGCTACATCAGATGACCAACCTGGTAAATTTATCTTGAACAGAATCTTGGAAGGGAGACACAGGAAACAAGCTGCACGCATGTTTTTTGAAACACTGGTTCTAAAGAGTTATGATTATATTGATGTTGAACAAGAAGCAGCCTATGGTGATATAGCAGTTTCAGTTAAACCCTCACTCTCAGGAGCCAAATTTTGA
Protein Sequence
- >LOC_Os08g16610.1
MFYSHTILARKSPLGTVWIAAHLERKIKKPQIDGIDIPSYAEFIMFPEVPIALRLSGHLLLGLVRIYSWKVNYLFHDCNRMLSTIRTAFASVQVDLPLHADHAPFDTITLPDTFRLDDINLDDAIRLIDTPDNHRKSLDQITLAEGDYLMIDLDEDARVELSAPGQSSHMGPEPTDEERLPPFHIDFGPSDNMDEEISVDPSQGNNSEAVNTSNINQADKAPDLPEIMREAPFEGPELNLPDIDEVNNDPMDVTEESSPFVSKNITPPALERTISPGQGGLSGTSIPNARGSTSTTYDNIEDVIPMDIGMPDFRIEPSPPRVQDEMNAQPVQGEINAQPVQDEMNAQPVQDEMNAHPAQDKRRIRYDNEIVFSNAYMKRQIDGGELHRLVSKRRKLPQAAVDVWKFNRIRQKDGFLLDPLVHGMCATLRQTYERTFPHVIDPEAESGSVEHTPGVANDSIQDTHDHQLSPKSPGNTDAQPEHQFNQQAPRNSDGQPEPELNPKSPVNAEAQPESQINPQSPRNADGQPEPELNPKSPGEAGTSHFDDMPEIPRFSPQNIPSPIRDDNSPFKTPGAGGTPKSRLGETPASGTPADMSYMSPGQDSDPQVSPFPFNDELDGDLPEIPSLMSTPGVISTAGTGTTGLGSMSARTRAVAQYFKDQMASATSDDQPGKFILNRILEGRHRKQAARMFFETLVLKSYDYIDVEQEAAYGDIAVSVKPSLSGAKF*