Gene Details:

Functional Descriptions:

  • CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice.
  • CDE4 directly binds to the transcripts of the chloroplast genes rpl2, ndhA, and ndhB.
  • Our results suggest that CDE4 participates in plastid RNA splicing and plays an important role in rice chloroplast development under low-temperature conditions.
  • Positional cloning revealed that CDE4 encodes a P-type PPR protein localized in chloroplasts.
  • Moreover, CDE4 interacts with the guanylate kinase VIRESCENT 2 (V2); overexpression of V2 enhanced CDE4 protein stability, thereby rescuing the CDE4 phenotype at 20C.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os08g09270.1
    GAGGGGCTCGCTGTCTCATCACTCTGTAACCGATAAGGCTGCCGCCATTGCTGCTGCTGCTGCTGCTTCCGCCGCGTCGCCTTCTCCGGCGATGGAGGCGGCGGCGGCGATTGGAGGGGCGCGGTCCCCGCTCTCCTTCTCCTCCAGCCTCTGCAATGCAAAAGTATCCTGTGGTTTAGCTCTTCACAATGTGAAGATCAAGAGCAGTCGAAGGCTTGAGGTGGTTTGCCATGGAATGTTGACAACCAGAAAGTTCATGCAGAAGAAGAAGAAAGAGGAGGTATATAAGGATGCTGCTGATGAAGCAGAGCAGAAGAATTGGAGGATGATGATGAGGGAGATAGAAGAGTCAGGATCAGCTGTCTCCATTCTGAAGACTCAGCGAAGCAAGAAAGAACCACTGCCAAGGGATGCTGTTCTTGGAACTCTTATGCGGTTCAAACAGCTCAAGAAATGGAACCTGGTCAGCGAGATTCTTGAATGGCTACGCACACAACATTGGTGGAACTTCAGTGAGATGGACTTTTTGATGCTTGTTACGGCCTATGGAAAATTAGGAGATTTTAGCAGAGCGGAGAGGGTCCTGAAGTATATGAACAAGAAAGGTTACAAACCAAGCGTGATATCTCAGACTGCACTGATGGAAGCATATGGAAGAGCCAAGCAGTATCGTAAGGCTGAAGCAGTGTTTCGCAGGATGCAAACATCAGGCCCTGAGCCATCAGCTGTGACATATCAAATCATTTTGAAATCTTTTGTTGAGGGTGACAAATACAAGGAAGCTGAAGCTATTTTTGAGGACCTTCTTAATGAGAAAAGAGCTTCTTTTAAGCCTGACCAGAAGATGTTTCATATGATGATTTATATGTACAAGAAAGCTGGCGACTATGCCCAGGCTCGGAAACTATTTGCTCAGATGTCAGAGAGAGGAATCCCTCTATCAACAGTCACCTTTAATAGTTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAGTATTTATGATCAGATGCAAAGAACTGCGCTAAAACCAGATGTTGTGAGCTACTCCCTGCTCATCAAAGCTTATGGAAAAGCTAGAAGGGAAGAAGAAGCATTAGCAGTTTTTGAAGAGATGCTTGATGCAGGAGTCAGGCCAACACGCAAGTCGTATAACATTTTGATTGATGCATTTGCAATATCTGGATTGGTAGAAGAAGCTCATACAGTTTTCAAGGCCATGAGAAGACACAGGGTTGAGCCTGATCTCTGTTCTTACACAACAATGGTCTTAGCTTATGTGAATGCTTCTGACATGGATGGGGCTGAGAAATTCTTCCGCCGGATTAAAGAGGACGGTTTGAAGCCAAATGTTGTTGTTTATGGAACTTTGATGAAGGGCTACTCGAAATTAAATAATGTTGAGAGAGTAATGAGAGTGTACGAGAGAATGCGGATGCAGGGTGTTGAACCCAATCAGACTATTTATACTACCATCATGGATGTGCATGGAAGGAACTCTGATTTTGGAAATGCTGTCATCTGGTTCAAAGAAATGGAGGCTCGTGGGTACCCAGCAGACAAGAAAGCAAAGAATATCCTTCTTTCTCTTGCCAAAACTCCTGAAGAACAAGAAGAAGCGAATGAATTGACAGGGAATTGTGCAATTCAGCTGGAAGCAAAACCCGATGGAACAACATATGGTTTAGAAATAAATGGTACTGGAAATGAGTATAAACATGGACAAAATGATGCTGGGCATGACAGTTTGTTAGATGGCGCATGCACCACAAGTAATCGAAATGGTAAAGTCGAGGCTGGGAAAGGTCATTTTGAGGAGGTTAATGACGATGATGATGATGATGATGACGATGATTACGATGAAGAGTTAAATTTTGTTTCTTTCAAAGATAAGCGAGAACTAAATTTTGCCACTTGATGTTTTGATTAATGTATATCTTTATATTCCAAACTTGTGATGGCATTTCCTATACAAAGGTATCCATGCTGTTTGTGAAATGTCAAATATAGCTATTTTTATGATATTACTGTCTAGCCTTGTCTGTTTCAAGGAATGAGGCTAAAAGGTCAAAA
CDS Sequence
  • >LOC_Os08g09270.1
    ATGGAGGCGGCGGCGGCGATTGGAGGGGCGCGGTCCCCGCTCTCCTTCTCCTCCAGCCTCTGCAATGCAAAAGTATCCTGTGGTTTAGCTCTTCACAATGTGAAGATCAAGAGCAGTCGAAGGCTTGAGGTGGTTTGCCATGGAATGTTGACAACCAGAAAGTTCATGCAGAAGAAGAAGAAAGAGGAGGTATATAAGGATGCTGCTGATGAAGCAGAGCAGAAGAATTGGAGGATGATGATGAGGGAGATAGAAGAGTCAGGATCAGCTGTCTCCATTCTGAAGACTCAGCGAAGCAAGAAAGAACCACTGCCAAGGGATGCTGTTCTTGGAACTCTTATGCGGTTCAAACAGCTCAAGAAATGGAACCTGGTCAGCGAGATTCTTGAATGGCTACGCACACAACATTGGTGGAACTTCAGTGAGATGGACTTTTTGATGCTTGTTACGGCCTATGGAAAATTAGGAGATTTTAGCAGAGCGGAGAGGGTCCTGAAGTATATGAACAAGAAAGGTTACAAACCAAGCGTGATATCTCAGACTGCACTGATGGAAGCATATGGAAGAGCCAAGCAGTATCGTAAGGCTGAAGCAGTGTTTCGCAGGATGCAAACATCAGGCCCTGAGCCATCAGCTGTGACATATCAAATCATTTTGAAATCTTTTGTTGAGGGTGACAAATACAAGGAAGCTGAAGCTATTTTTGAGGACCTTCTTAATGAGAAAAGAGCTTCTTTTAAGCCTGACCAGAAGATGTTTCATATGATGATTTATATGTACAAGAAAGCTGGCGACTATGCCCAGGCTCGGAAACTATTTGCTCAGATGTCAGAGAGAGGAATCCCTCTATCAACAGTCACCTTTAATAGTTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAGTATTTATGATCAGATGCAAAGAACTGCGCTAAAACCAGATGTTGTGAGCTACTCCCTGCTCATCAAAGCTTATGGAAAAGCTAGAAGGGAAGAAGAAGCATTAGCAGTTTTTGAAGAGATGCTTGATGCAGGAGTCAGGCCAACACGCAAGTCGTATAACATTTTGATTGATGCATTTGCAATATCTGGATTGGTAGAAGAAGCTCATACAGTTTTCAAGGCCATGAGAAGACACAGGGTTGAGCCTGATCTCTGTTCTTACACAACAATGGTCTTAGCTTATGTGAATGCTTCTGACATGGATGGGGCTGAGAAATTCTTCCGCCGGATTAAAGAGGACGGTTTGAAGCCAAATGTTGTTGTTTATGGAACTTTGATGAAGGGCTACTCGAAATTAAATAATGTTGAGAGAGTAATGAGAGTGTACGAGAGAATGCGGATGCAGGGTGTTGAACCCAATCAGACTATTTATACTACCATCATGGATGTGCATGGAAGGAACTCTGATTTTGGAAATGCTGTCATCTGGTTCAAAGAAATGGAGGCTCGTGGGTACCCAGCAGACAAGAAAGCAAAGAATATCCTTCTTTCTCTTGCCAAAACTCCTGAAGAACAAGAAGAAGCGAATGAATTGACAGGGAATTGTGCAATTCAGCTGGAAGCAAAACCCGATGGAACAACATATGGTTTAGAAATAAATGGTACTGGAAATGAGTATAAACATGGACAAAATGATGCTGGGCATGACAGTTTGTTAGATGGCGCATGCACCACAAGTAATCGAAATGGTAAAGTCGAGGCTGGGAAAGGTCATTTTGAGGAGGTTAATGACGATGATGATGATGATGATGACGATGATTACGATGAAGAGTTAAATTTTGTTTCTTTCAAAGATAAGCGAGAACTAAATTTTGCCACTTGA
Protein Sequence
  • >LOC_Os08g09270.1
    MEAAAAIGGARSPLSFSSSLCNAKVSCGLALHNVKIKSSRRLEVVCHGMLTTRKFMQKKKKEEVYKDAADEAEQKNWRMMMREIEESGSAVSILKTQRSKKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEINGTGNEYKHGQNDAGHDSLLDGACTTSNRNGKVEAGKGHFEEVNDDDDDDDDDDYDEELNFVSFKDKRELNFAT*