Gene Details:

Functional Descriptions:

  • Here we showed that knockdown of OsTOP1 strongly affects rice development, causing defects in root architecture and gravitropism which are the consequences of mis-regulation of auxin signaling and transporter genes.
  • Our data reveals R-loops as important factors in polar auxin transport and plant root development, and highlights that OsTOP1 functions as a key to link transcriptional R-loops and plant hormone signaling.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os08g05840.1
    AAGAGAAAAAAAACGCAAGGCGAGAGAGGGAGGGAGAGGAGTCGGAGGCAGCGGCGCGGGCGAGGCGAGGTGAGAGCGAGCGATAGAAATACGAGAGCGGGAGGAGAGGCGAGGAGAGAGAGACACAGATAAGCTCAGCCCTAACCCTAGCTCCCCGCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGCTCCCCGGGGAGCGGGACGTCGCCGCCGCGGCGCCTAGGTGTGGTTGACTCAGCATATTTGTTCCGTCTGCCAGCCGCCGCCCCTAGGGATCGATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTTCCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGTCAAGCAGTCCAAACCCTCGACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGACTTGAGCAAAGTAAGGAAAGGAAAGAATCTAGGCAATGACAAAGATGGGAAACCAAAAAGAAATTTGGCCCCTGAAGCGTTTGAAAAGAAGATATCTCAGATTGAAACCAAGATAGAGAAGATGGAGATGGATAAGAAGATTAAAGAGGATTTAAAGACAGTGGCACTAGGAACTTCAAAGATCAATTACCTTGATCCCAGAATTACTGTTGCATGGTGCAAACGCCATGAAGTACCCATCGAGAAGATTTTCAACAAATCACTCATTGCGAAATTTTCGTGGGCAATGGACGTCGACCCGGATTTCAGATTTTAAGAGGGTACAAGAGCATTGGCTACTGGTCATCCGGCCTGTAGTAAAGTTGATCCAGCTTCCAGTCCTTGTCCCGGACACTAATTTGCAGCTAGGAAAGGAAGAGCTCGGTGTTTGTTTTTGAAGTCCCCTGCTCCTGGAAAGAAGGAAGCACCCGGCATTCTCATTGTAGGCTTTTTTTTTCTTTTACTACTTGTTGGTGCCTTTGCCATCGGTCCTCAAGTTCTGTATGCATTTGGGCTGAGGAATTTTAGCTCGCTGAGAACGAATGGACATTCATTTTATACCGAATTAATCTCAAATATACCATGAGGTTTCGTTTGGTTGCGGAAGGGAACATTGTTTGCGTATGTACTTGCGAACTGGTAATGGAAGAAGTGCTGAGGTGTAAATTTTGATCAAAGATATTTTTCCTG
CDS Sequence
  • >LOC_Os08g05840.1
    ATGGCTGTTGTCGATCCTGTTATGTTTGACAACGACGACGAGGAAGGTCCGATCTCCTTCAAGAGGTCGAGCACCTCTGTGAAGAACAGGCCCACCCCCACAAAGCAGGAGGGCTCATCAGGGAATGCCGGACCTATTAGGAGCCCTAAGGCTGTTGCTTCCAATCAACAGAAGAATGGGCTGACTGGTGTTTCGAGGCCTTTGCAACAGAGGCCGCAGTCAAGCAGTCCAAACCCTCGACCTTTGGGATCAGGTCAGCCGAACAGTTCCAAAGAACATAGTAGCCATAATAGTAACTCAGTGGATAAGAGTAAATTGAAAAGACCTTTCGTGGAAGATAAGTCGGATGACTCAGAAGATGACCATAAGCCAATCGGATTAAGGAGAAAGGTCGAGGATAGAAATTTGAAGAAACCTGCTGTAGGAAGTGGGACAGCAAATGATTCAGATGATGATAAACCATTGAGTCTCAAGATAAACTCAACAAAAACGCCTTCGAGTAGTGCAAATAAGGCTATTGTACTGAAAACTACACCTAAAATTGAGCAACCTGGTGATGATTCAGAGGACGATAAACCACTGGCCAGCAGGTTGCCAACTAATGCTGCTCTGAAAAGGGGAGGTAATGTTTCTGATGATTCAGAGGATGAGAAGCCATTGGCTGCCCGATTTTCGAAAGTTACTGGCAATGCATCTGCAAGTATCTCAAGTTCAAAGGACAAGGTCCTGTCTGCAAGTATAAAAGCAAGTTCTTCCAGCAAGATGTCTAACAATGACGCGAGCACATCACGAAATTCAATTAAAAGGCCAATTGACAATAATAATCAAACAAGTTCAGCTCTCAAGAAGGCGAGGCCTTCAGATGTTTCTGCGTCTGCAAGTGTCAAAAGAGAACCCAAGGCGGATGACAATGACAATGTACCTCTTTCACAAAGACTGAAAATGGGTGAGTCTTCAAAAAGCAAGCCACCTGCAAAGAATATCGTAAAGAAGAGTCCTTCATCTTTAAAGAAGGACAACAAGAAAATGAAAATGAAAATGAAAACAAAGAAAACAATGAAAAATTCTCAGTTCTCAAAGACAATGAAGGTCCCTCCTGGATCTGGTGGTGGACAGAAATGGACTACCTTGGTGCACAGTGGTGTTATTTTCCCCCCTCCATACAAGCCTCATGGTGTCAAGATGCTTTACAACGGGCAACCTGTTGATCTGACGCCAGAACAAGAAGAGGTTGCCACCATGTTTGCTGTGATGAAAGACACTGATTATGCATCCAAGCAAACATTCATTGACAACTTCTTCACTGATTGGAGAAAAATTCTTGGTAAAAACCATGTCATCAAGAAATTTGAGCTTTGTGATTTCACCCCGATCTATGAATGGCACCTAAGAGAGAAGGAGAAGAAGAAGCAGATGACATCTGAGGAGAAGAAAGCATTGAAGGAAGAGAAATTGAAACAAGAGGAGAAGTACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGCAATTTCAGAGTAGAACCACCTGGCTTGTTCAGGGGGCGCGGAGAGCATCCGAAGATGGGAAAACTGAAGCGCCGCATTAAACCAAGCGATATTACAATAAATATCGGAAAAGGGGCTCCGATCCCCGAATGTCCCATACCTGGAGAAAGTTGGAAAGAAGTCAAACACGACAACACAGTTACATGGTTGGCCTTTTGGAATGATCCAATAAGCCAAAAAGATTTCAAGTATGTTTTCTTGGCAGCAAGCAGTGCATTAAAGGGCCAAAGTGACAAAGAGAAGTATGAGAAGTCTCGAAAATTGAAGCATCACGTACACAAAATTCGTGACACTTACACAAAGGATTTCAGAAGCAAAGATAAGACAAAGAAACAAATTGCAGTGGCAACATACCTTATAGATAAGTTAGCCCTTAGGGCAGGCAATGAGAAGGATGAAGATGAGGCTGAAACTGTTGGTTGCTGTACACTGAAGGTTGATAATGTTACTTGTGTTCCTCCAAATAAACTGCAGTTCGACTTCCTTGGTAAAGATTCTATAAGATACTTCAATACTGTAGAGGTTGAACTGCTTGTATACAAGGCAATTGAGGAATTCCGTGCTGGCAAGAAACCAGGACAAGATCTCTTTGACAAACTCGATACAACCAGGCTAAATGCTCATCTAAAGGACTTGATGCCTGGGCTTACCGCAAAAGTGTTCCGTACATATAATGCTTCAATCACCTTGGATGATATTTTGCACAAAGAAACAGAAGATGGAACTCTTCTTGAAAAAATTGCGGTTTATCAACGAGCCAACAAAGAGGTTGCTATAATCTGTAACCATCAGCGTAGTGTCTCAAAATCACATGATTCCCAGATGACTAGATTGAATGAGAAGATTGATGAATTGAAGGCCCAAAGGGATGAATTGAAGGCAGACTTGAGCAAAGTAAGGAAAGGAAAGAATCTAGGCAATGACAAAGATGGGAAACCAAAAAGAAATTTGGCCCCTGAAGCGTTTGAAAAGAAGATATCTCAGATTGAAACCAAGATAGAGAAGATGGAGATGGATAAGAAGATTAAAGAGGATTTAAAGACAGTGGCACTAGGAACTTCAAAGATCAATTACCTTGATCCCAGAATTACTGTTGCATGGTGCAAACGCCATGAAGTACCCATCGAGAAGATTTTCAACAAATCACTCATTGCGAAATTTTCGTGGGCAATGGACGTCGACCCGGATTTCAGATTTTAA
Protein Sequence
  • >LOC_Os08g05840.1
    MAVVDPVMFDNDDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSEDDHKPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF*