Gene Details:
- MSU gene ID: LOC_Os07g49310
- RAPdb gene ID: Os07g0693800
- Gene Symbol: OsFAD8
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- RNA in situ hybridization showed that the accumulation of OsFAD8 mRNA was abundant in leaves but hardly detectable in roots.
- Fatty acid analysis of homozygous OsFAD8 T-DNA knockout mutant and wild type plants have exhibited changes in fatty acid composition after cold stress, thus confirming that OsFAD8 gene codes for omega-3 fatty acid desaturase activity at low temperature.
- Photosynthetic efficiency and recovery of OsFAD8 knockout mutants are significantly reduced after cold stress as compared to those of wild type plants.
- The OsFAD8 transcript level in leaves was much higher at 15 degrees C than at normal temperature (25 degrees C).
- These data suggest that OsFAD8 encodes a temperature-dependent chloroplast omega-3 fatty acid desaturase.
- Expression of two rice plastidial omega-3 desaturase genes, OsFAD7 and OsFAD8 under different temperatures has been investigated.
- Transcript levels of OsFAD7 increased at high temperature; while those of OsFAD8 increased at low temperatures.
- Characterization of OsFAD8 suggests that it has a functional role in maintaining levels of trienoic fatty acids and stress tolerance at low temperatures.
- Effects of low temperature stress on rice (Oryza sativa L.) plastid omega-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants.
- A cDNA, designated OsFAD8, encoding a chloroplast omega-3 fatty acid desaturase responsible for trienoic fatty acid formation, was isolated from the leaves of Oryza sativa L.
- At room temperature (28 C), OsFAD8 plants exhibited significant alterations in fatty acid (FA) unsaturation for all four investigated plastidic lipid classes.
- Taken together, our findings suggest that FA unsaturation by OsFAD8 is crucial for the acclimation of higher plants to low-temperature stress.
Function-related keywords:
- root , cold-stress , temperature , chloroplast , stress
Literature:
- Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase . DOI: 10.1016/j.bbrc.2005.12.126 ; PMID: 16406238
- Effects of low temperature stress on rice ( Oryza sativa L.) plastid ω-3 desaturase gene, OsFAD8 and its functional analysis using T-DNA mutants . DOI: 10.1007/s11240-009-9541-y
- Identification and evaluation of ω-3 fatty acid desaturase genes for hyperfortifying α-linolenic acid in transgenic rice seed . DOI: 10.1093/jxb/ers051 ; PMID: 22378946
- Rice mutants deficient in ω-3 fatty acid desaturase (FAD8) fail to acclimate to cold temperatures . DOI: 10.1016/j.plaphy.2016.11.001 ; PMID: 27835850
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os07g49310.1
AGTTGGGTTTTCCTTTCCTTTTTGCGTTGATAAACCCAGGCGGGGGCGGCGCCGCGCAGCTTACCAATACCAATTGGAGTAGAACCAACCAAGGAAAGAATGGCCCGGCTGCTACTCTCCGGCGTCGCGCCGCTCCCCCTCCTCCCCTGCCGCCGTCGCGCCATTGCATTTGCGCTCCCACTTGGGAATGTCCGCCTCCGCCTCCGTGTGGCCGCACCCACCAGCCGCGTGGCCACCGTGGAGGAGGACGACAATGAAAATAATGCTCCTCCTCCTCCTTGTGAGGACTTCGACCCGGGCGCGGCGCCCCCGTTTGGTCTGGCCGACATCCGCGCCGCTATCCCCAAGCACTGTTGGGTGAAGGACCCCTGGCGATCCATGGGGTACGTGCTGCGCGACGTGGTGGTGGTGTTCGCCCTCGCTGCCGCCGCCGCGCGCCTCCACAGCTGCCTCGCCTGGCCGCTCTACTGGGCGGCGCAGGGAACCATGTTCTGGGCGCTCTTCGTCCTCGGCCACGACTGCGGGCACGGGAGCTTCTCCAACAACTCGAGGCTCAACAGCGTGATGGGCCACATACTCCACTCCTCCATCCTCGTACCCTACCATGGCTGGAGGATTAGCCACAGGACGCATCATCAGAACCATGGCCATGTCGACAAGGATGAGTCCTGGCATCCCCTCCCCGAGCGGCTGTACAGGAGCCTTAACAGAGCCACCCGGATGCTCCGCTTCTCCATACCCTTCCCCATGCTCGCCTACCCATTCTACCTGTGGTCTCGGAGCCCAGGAAAGTCTGGTTCGCATTTCCATCCCAGCAGCGACCTGTTCCAGCCCAACGAAAGGAACGATGTGCTGACATCCACAGCGTGCTGGGTGGCCATGGCTGCCCTCCTCGCAGGCCTCACCTTCCTCATGGGACCCCTCCTCATGCTCAACCTCTACTTTGTCCCTTACTGGATTTTTGTTATGTGGCTGGACTTCGTCACCTACTTGCACCATCACGGCCACAACGACAAGCTGCCCTGGTACCGTGGCAAGGAATGGAGCTATTTGCGGGGAGGACTGACGACAGTGGACAGGGACTATGGGTGGATCAACAACATCCACCACGACATCGGGACACATGTCATTCACCATCTTTTCCCCCAAATCCCGCATTACCATCTAATTGAGGCGACGGAAGCAGCAAAGGGTGTGATGGGGAAATACTACAGGGAGCCGGACAAGTCTGGGCCTTTTCCCTTACACCTGTTTGGAGCGCTGTCCCGGAGCTTGAAACGCGACCACTATGTCAGCGACACCGGAGATGTGGTCTACTACCAGACCGACCCTGCTAACTAAATTAATTTTACATTTCCTTCAATTCTTTTAAGCCCGGAGGCTTAAATTAGCTTAATTAGATAGCTGCGACTGACCTGGACATGTATTCAACATTCGATCCACAGACAGATAGAAAGAGACCTATATATATCGCCGATCAATCGATATATATGTGCGTGTCCGTGTGGAGATATGGAGGTCACAATTCTTTCCATGGATATATAGGAGTATACATACATGTATTGAAGGATATGTAGCTAGATTTGATGTGCGTGCGTGCTGTACTTTGTAAGACGCAGCATAAAGCTAGTGACAATTTGGACAAGGCCATATTGATATATCCATTATATACACACCTCAATGCCTCATT - >LOC_Os07g49310.2
AGTTGGGTTTTCCTTTCCTTTTTGCGTTGATAAACCCAGGCGGGGGCGGCGCCGCGCAGCTTACCAATACCAATTGGAGTAGAACCAACCAAGGAAAGAATGGCCCGGCTGCTACTCTCCGGCGTCGCGCCGCTCCCCCTCCTCCCCTGCCGCCGTCGCGCCATTGCATTTGCGCTCCCACTTGGGAATGTCCGCCTCCGCCTCCGTGTGGCCGCACCCACCAGCCGCGTGGCCACCGTGGAGGAGGACGACAATGAAAATAATGCTCCTCCTCCTCCTTGTGAGGACTTCGACCCGGGCGCGGCGCCCCCGTTTGGTCTGGCCGACATCCGCGCCGCTATCCCCAAGCACTGTTGGGTGAAGGACCCCTGGCGATCCATGGGGTACGTGCTGCGCGACGTGGTGGTGGTGTTCGCCCTCGCTGCCGCCGCCGCGCGCCTCCACAGCTGCCTCGCCTGGCCGCTCTACTGGGCGGCGCAGGGAACCATGTTCTGGGCGCTCTTCGTCCTCGGCCACGACTGCGGGCACGGGAGCTTCTCCAACAACTCGAGGCTCAACAGCGTGATGGGCCACATACTCCACTCCTCCATCCTCGTACCCTACCATGGCTGGAGGATTAGCCACAGGACGCATCATCAGAACCATGGCCATGTCGACAAGGATGAGTCCTGGCATCCCCTCCCCGAGCGGCTGTACAGGAGCCTTAACAGAGCCACCCGGATGCTCCGCTTCTCCATACCCTTCCCCATGCTCGCCTACCCATTCTACCTGTGGTCTCGGAGCCCAGGAAAGTCTGGTTCGCATTTCCATCCCAGCAGCGACCTGTTCCAGCCCAACGAAAGGAACGATGTGCTGACATCCACAGCGTGCTGGGTGGCCATGGCTGCCCTCCTCGCAGGCCTCACCTTCCTCATGGGACCCCTCCTCATGCTCAACCTCTACTTTGTCCCTTACTGGATTTTTGTTATGTGGCTGGACTTCGTCACCTACTTGCACCATCACGGCCACAACGACAAGCTGCCCTGGTACCGTGGCAAGGAATGGAGCTATTTGCGGGGAGGACTGACGACAGTGGACAGGGACTATGGGTGGATCAACAACATCCACCACGACATCGGGACACATGTCATTCACCATCTTTTCCCCCAAATCCCGCATTACCATCTAATTGAGGCGACGGAAGCAGCAAAGGGTGTGATGGGGAAATACTACAGGGAGCCGGACAAGTCTGGGCCTTTTCCCTTACACCTGTTTGGAGCGCTGTCCCGGAGCTTGAAACGCGACCACTATGTCAGCGACACCGGAGATGTGGTCTACTACCAGACCGACCCTGCTAACTAAATTAATTTTACATTTCCTTCAATTCTTTTAAGCCCGGAGGCTTAAATTAGCTTAATTAGATAGCTGCGACTGACCTGGACATGTATTCAACATTCGATCCACAGACAGATAGAAAGAGACCTATATATATCGCCGATCAATCGATATATATGTGCGTGTCCGTGTGGAGATATGGAGGTCACAATTCTTTCCATGGATATATAGGAGTATACATACATGTATTGAAGGATATGTAGCTAGATTTGATGTGCGTGCGTGCTGTACTTTGTAAGACGCAGCATAAAGCTAGTGACAATTTGGACAAGGCCATATTGATATATCCATTATATACACACCTCAATGCCTCATT
CDS Sequence
- >LOC_Os07g49310.1
ATGGCCCGGCTGCTACTCTCCGGCGTCGCGCCGCTCCCCCTCCTCCCCTGCCGCCGTCGCGCCATTGCATTTGCGCTCCCACTTGGGAATGTCCGCCTCCGCCTCCGTGTGGCCGCACCCACCAGCCGCGTGGCCACCGTGGAGGAGGACGACAATGAAAATAATGCTCCTCCTCCTCCTTGTGAGGACTTCGACCCGGGCGCGGCGCCCCCGTTTGGTCTGGCCGACATCCGCGCCGCTATCCCCAAGCACTGTTGGGTGAAGGACCCCTGGCGATCCATGGGGTACGTGCTGCGCGACGTGGTGGTGGTGTTCGCCCTCGCTGCCGCCGCCGCGCGCCTCCACAGCTGCCTCGCCTGGCCGCTCTACTGGGCGGCGCAGGGAACCATGTTCTGGGCGCTCTTCGTCCTCGGCCACGACTGCGGGCACGGGAGCTTCTCCAACAACTCGAGGCTCAACAGCGTGATGGGCCACATACTCCACTCCTCCATCCTCGTACCCTACCATGGCTGGAGGATTAGCCACAGGACGCATCATCAGAACCATGGCCATGTCGACAAGGATGAGTCCTGGCATCCCCTCCCCGAGCGGCTGTACAGGAGCCTTAACAGAGCCACCCGGATGCTCCGCTTCTCCATACCCTTCCCCATGCTCGCCTACCCATTCTACCTGTGGTCTCGGAGCCCAGGAAAGTCTGGTTCGCATTTCCATCCCAGCAGCGACCTGTTCCAGCCCAACGAAAGGAACGATGTGCTGACATCCACAGCGTGCTGGGTGGCCATGGCTGCCCTCCTCGCAGGCCTCACCTTCCTCATGGGACCCCTCCTCATGCTCAACCTCTACTTTGTCCCTTACTGGATTTTTGTTATGTGGCTGGACTTCGTCACCTACTTGCACCATCACGGCCACAACGACAAGCTGCCCTGGTACCGTGGCAAGGAATGGAGCTATTTGCGGGGAGGACTGACGACAGTGGACAGGGACTATGGGTGGATCAACAACATCCACCACGACATCGGGACACATGTCATTCACCATCTTTTCCCCCAAATCCCGCATTACCATCTAATTGAGGCGACGGAAGCAGCAAAGGGTGTGATGGGGAAATACTACAGGGAGCCGGACAAGTCTGGGCCTTTTCCCTTACACCTGTTTGGAGCGCTGTCCCGGAGCTTGAAACGCGACCACTATGTCAGCGACACCGGAGATGTGGTCTACTACCAGACCGACCCTGCTAACTAA - >LOC_Os07g49310.2
ATGGCCCGGCTGCTACTCTCCGGCGTCGCGCCGCTCCCCCTCCTCCCCTGCCGCCGTCGCGCCATTGCATTTGCGCTCCCACTTGGGAATGTCCGCCTCCGCCTCCGTGTGGCCGCACCCACCAGCCGCGTGGCCACCGTGGAGGAGGACGACAATGAAAATAATGCTCCTCCTCCTCCTTGTGAGGACTTCGACCCGGGCGCGGCGCCCCCGTTTGGTCTGGCCGACATCCGCGCCGCTATCCCCAAGCACTGTTGGGTGAAGGACCCCTGGCGATCCATGGGGTACGTGCTGCGCGACGTGGTGGTGGTGTTCGCCCTCGCTGCCGCCGCCGCGCGCCTCCACAGCTGCCTCGCCTGGCCGCTCTACTGGGCGGCGCAGGGAACCATGTTCTGGGCGCTCTTCGTCCTCGGCCACGACTGCGGGCACGGGAGCTTCTCCAACAACTCGAGGCTCAACAGCGTGATGGGCCACATACTCCACTCCTCCATCCTCGTACCCTACCATGGCTGGAGGATTAGCCACAGGACGCATCATCAGAACCATGGCCATGTCGACAAGGATGAGTCCTGGCATCCCCTCCCCGAGCGGCTGTACAGGAGCCTTAACAGAGCCACCCGGATGCTCCGCTTCTCCATACCCTTCCCCATGCTCGCCTACCCATTCTACCTGTGGTCTCGGAGCCCAGGAAAGTCTGGTTCGCATTTCCATCCCAGCAGCGACCTGTTCCAGCCCAACGAAAGGAACGATGTGCTGACATCCACAGCGTGCTGGGTGGCCATGGCTGCCCTCCTCGCAGGCCTCACCTTCCTCATGGGACCCCTCCTCATGCTCAACCTCTACTTTGTCCCTTACTGGATTTTTGTTATGTGGCTGGACTTCGTCACCTACTTGCACCATCACGGCCACAACGACAAGCTGCCCTGGTACCGTGGCAAGGAATGGAGCTATTTGCGGGGAGGACTGACGACAGTGGACAGGGACTATGGGTGGATCAACAACATCCACCACGACATCGGGACACATGTCATTCACCATCTTTTCCCCCAAATCCCGCATTACCATCTAATTGAGGCGACGGAAGCAGCAAAGGGTGTGATGGGGAAATACTACAGGGAGCCGGACAAGTCTGGGCCTTTTCCCTTACACCTGTTTGGAGCGCTGTCCCGGAGCTTGAAACGCGACCACTATGTCAGCGACACCGGAGATGTGGTCTACTACCAGACCGACCCTGCTAACTAA
Protein Sequence
- >LOC_Os07g49310.1
MARLLLSGVAPLPLLPCRRRAIAFALPLGNVRLRLRVAAPTSRVATVEEDDNENNAPPPPCEDFDPGAAPPFGLADIRAAIPKHCWVKDPWRSMGYVLRDVVVVFALAAAAARLHSCLAWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSRLNSVMGHILHSSILVPYHGWRISHRTHHQNHGHVDKDESWHPLPERLYRSLNRATRMLRFSIPFPMLAYPFYLWSRSPGKSGSHFHPSSDLFQPNERNDVLTSTACWVAMAALLAGLTFLMGPLLMLNLYFVPYWIFVMWLDFVTYLHHHGHNDKLPWYRGKEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKGVMGKYYREPDKSGPFPLHLFGALSRSLKRDHYVSDTGDVVYYQTDPAN* - >LOC_Os07g49310.2
MARLLLSGVAPLPLLPCRRRAIAFALPLGNVRLRLRVAAPTSRVATVEEDDNENNAPPPPCEDFDPGAAPPFGLADIRAAIPKHCWVKDPWRSMGYVLRDVVVVFALAAAAARLHSCLAWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSRLNSVMGHILHSSILVPYHGWRISHRTHHQNHGHVDKDESWHPLPERLYRSLNRATRMLRFSIPFPMLAYPFYLWSRSPGKSGSHFHPSSDLFQPNERNDVLTSTACWVAMAALLAGLTFLMGPLLMLNLYFVPYWIFVMWLDFVTYLHHHGHNDKLPWYRGKEWSYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKGVMGKYYREPDKSGPFPLHLFGALSRSLKRDHYVSDTGDVVYYQTDPAN*