Information report for OsbZIP60
Gene Details
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Functional Descriptions
- Finally, yeast two-hybrid screening results showed that Bphi008a is able to interact with a b-ZIP transcription factor (OsbZIP60) and a RNA polymerase polypeptide (SDRP).
- Here, a genome-wide association study (GWAS) reveals that the transcription factor OsbZIP60 is a vital regulator of rice grain chalkiness.
- Genetic analysis demonstrates that knockout of OsbZIP60 results in extremely high grain chalkiness and aberrant structure of storage substances.
- Furthermore, OsbZIP60 is found to activate the expression of key genes related to grain chalkiness, such as GPA3, FSE1, FLO7, Chalk5, OsNF-YB1, and OsPK2, whose expression is significantly suppressed in OsbZIP60 and overexpression lines of OsbZIP50, OsBiP1, OsBiP2, and OsBiP3.
- Our study provides novel insights into the function of OsbZIP60 and the role of the UPR pathway in the formation of grain chalkiness in rice.
Functional Keywords
Literature and News
- Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa . DOI: 10.1007/s11741-009-0216-3
- Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice . DOI: 10.1111/j.1365-313X.2011.04844.x ; PMID: 22050533
- The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding . DOI: 10.1104/pp.111.174334 ; PMID: 21487048
- Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide . DOI: 10.1111/j.1467-7652.2010.00502.x ; PMID: 20331531
- Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice . DOI: 10.1104/pp.107.112821 ; PMID: 18065552
- OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice . DOI: 10.1016/j.jgg.2022.02.002 ; PMID: 35189403
Gene Resources
- UniProt: Q8LIB3
- EMBL: AK121898, AP003765, AP003832
- AlphaFoldDB: Q8LIB3
- EnsemblPlants: Os07t0644100-01
- Gramene: Os07t0644100-01
- KEGG: dosa:Os07g0644100
- Orthologous matrix: HGERDSC
- InterPro: IPR004827, IPR046347
- PANTHER: PTHR47416, PTHR47416:SF7
- SUPFAM: SSF57959
- PROSITE: PS00036, PS50217
- Gene3D: 1.20.5.170
- OrthoDB: Q8LIB3
- SWISS-MODEL: Q8LIB3
- Conserved Domain Database: cd14704
- eggNOG: ENOG502QQUV
Sequences
cDNA Sequence
- >LOC_Os07g44950.1
CGCACCTTCGCTCTCTTTTCCATTGCAGAGCCCTCACGCTTCCGCAACCACCACCGCGTCCGTGATCCCATCCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCGCGGCTGGTGCGCAACCGGGAGAGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTGAAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAGAACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCGCCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCCTACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAGCCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGTGTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTAAATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCATGGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAGGTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAGCATGTGAAGATCAATGGAAATCTGGTTATTAAGTCCATTGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAGCCATAGCCCTCACTTGTAATGTAAGCAAGTTTTACAACGTAATCTGTAACAGAACGGATCTCCAAATGAGCTGACTTTATTGTGCGATGTTGATAGACATATAGAGCCTTTTTTTTTTCTTTTTACTGGATTACCAGTTTATTGACAGGAATGAGTGTTGGTTC
CDS Sequence
- >LOC_Os07g44950.1
ATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCGCGGCTGGTGCGCAACCGGGAGAGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTGAAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAGAACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCGCCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCCTACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAGCCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGTGTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTAAATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCATGGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAGGTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAGCATGTGAAGATCAATGGAAATCTGGTTATTAAGTCCATTGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAGCCATAGCCCTCACTTGTAA
Protein Sequence
- >LOC_Os07g44950.1
MAEPDLLAPFADLPFPPGDDFPDFPTLGDDAFALEDFDLDDLDFDFDVDLFPPDAPPPVTTSSSSSAAGSPEAGTSSAGDGGSKNEESADSSSPSRSGSDGGGGKDGKDDEAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQLGGAAGAGAAAPPPPMPMYPAVYPLPMPWIHPAYAMRGSQVPLVPIPRLKTQQPASTPEPPAKKARKTKKVAGVSLLGLLFLMMVCGCLVPAVNRMYGAAYTGEGAAIVPSHHGRILAVEGPQNSVSNGVDPKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLSNYGEKGSGNQGKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYREDDGMLPQWFSEAMSGPMLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYSEAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLADPREASDRDGEGRISSNSLSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL*