Gene Details:
- MSU gene ID: LOC_Os07g44950
- RAPdb gene ID: Os07g0644100
- Gene Symbol: OsbZIP60
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Finally, yeast two-hybrid screening results showed that Bphi008a is able to interact with a b-ZIP transcription factor (OsbZIP60) and a RNA polymerase polypeptide (SDRP).
- Here, a genome-wide association study (GWAS) reveals that the transcription factor OsbZIP60 is a vital regulator of rice grain chalkiness.
- Genetic analysis demonstrates that knockout of OsbZIP60 results in extremely high grain chalkiness and aberrant structure of storage substances.
- Furthermore, OsbZIP60 is found to activate the expression of key genes related to grain chalkiness, such as GPA3, FSE1, FLO7, Chalk5, OsNF-YB1, and OsPK2, whose expression is significantly suppressed in OsbZIP60 and overexpression lines of OsbZIP50, OsBiP1, OsBiP2, and OsBiP3.
- Our study provides novel insights into the function of OsbZIP60 and the role of the UPR pathway in the formation of grain chalkiness in rice.
Function-related keywords:
Literature:
- Genome-wide analysis of basic leucine zipper transcription factor families in Arabidopsis thaliana, Oryza sativa and Populus trichocarpa . DOI: 10.1007/s11741-009-0216-3
- Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice . DOI: 10.1111/j.1365-313X.2011.04844.x ; PMID: 22050533
- The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding . DOI: 10.1104/pp.111.174334 ; PMID: 21487048
- Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide . DOI: 10.1111/j.1467-7652.2010.00502.x ; PMID: 20331531
- Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice . DOI: 10.1104/pp.107.112821 ; PMID: 18065552
- OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice . DOI: 10.1016/j.jgg.2022.02.002 ; PMID: 35189403
Related News:
Gene Resources:
- NCBI ID: AK121898
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os07g44950.1
CGCACCTTCGCTCTCTTTTCCATTGCAGAGCCCTCACGCTTCCGCAACCACCACCGCGTCCGTGATCCCATCCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCGCGGCTGGTGCGCAACCGGGAGAGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTGAAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAGAACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCGCCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCCTACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAGCCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGTGTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTAAATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCATGGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAGGTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAGCATGTGAAGATCAATGGAAATCTGGTTATTAAGTCCATTGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAGCCATAGCCCTCACTTGTAATGTAAGCAAGTTTTACAACGTAATCTGTAACAGAACGGATCTCCAAATGAGCTGACTTTATTGTGCGATGTTGATAGACATATAGAGCCTTTTTTTTTTCTTTTTACTGGATTACCAGTTTATTGACAGGAATGAGTGTTGGTTC
CDS Sequence
- >LOC_Os07g44950.1
ATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCGCGGCTGGTGCGCAACCGGGAGAGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTGAAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAGAACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCGCCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCCTACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAGCCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGTGTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTAAATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCATGGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAGGTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAGCATGTGAAGATCAATGGAAATCTGGTTATTAAGTCCATTGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAGCCATAGCCCTCACTTGTAA
Protein Sequence
- >LOC_Os07g44950.1
MAEPDLLAPFADLPFPPGDDFPDFPTLGDDAFALEDFDLDDLDFDFDVDLFPPDAPPPVTTSSSSSAAGSPEAGTSSAGDGGSKNEESADSSSPSRSGSDGGGGKDGKDDEAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQLGGAAGAGAAAPPPPMPMYPAVYPLPMPWIHPAYAMRGSQVPLVPIPRLKTQQPASTPEPPAKKARKTKKVAGVSLLGLLFLMMVCGCLVPAVNRMYGAAYTGEGAAIVPSHHGRILAVEGPQNSVSNGVDPKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLSNYGEKGSGNQGKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYREDDGMLPQWFSEAMSGPMLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYSEAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLADPREASDRDGEGRISSNSLSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL*