Information report for OsLFR
Gene Details
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Functional Descriptions
- OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa.
- OsLFR depletion resulted in homozygous lethality in the early seed stage through endosperm and embryo defects, which could be successfully recovered by the OsLFR genomic sequence.
- Transcriptome profiling showed that many genes, involved in DNA replication, cell cycle, cell wall assembly and cell death, were differentially expressed in a knockout mutant of OsLFR (OsLFR-1), which was consistent with the observed seed defects.
- Cytological observations revealed that the OsLFR endosperm had relatively fewer free nuclei, had abnormal and arrested cellularization, and demonstrated premature programed cell death: the embryo was reduced in size and failed to differentiate.
- OsLFR was expressed primarily in the rice spikelets and seeds, and the OsLFR protein was localized to the nucleus.
Functional Keywords
- development , seed , cell-death , R-protein , nucleus , cell-wall , endosperm , cell-cycle
Literature and News
Gene Resources
- UniProt: Q6YTW6
- EMBL: AC079038, AP005895, AP008213
- AlphaFoldDB: Q6YTW6
- EnsemblPlants: Os07t0609766-01
- Gramene: Os07t0609766-01
- KEGG: dosa:Os07g0609766, osa:9271563
- InterPro: IPR011989, IPR016024, IPR021906
- PANTHER: PTHR12656, PTHR12656:SF5
- SUPFAM: SSF48371
- Gene3D: 1.25.10.10
- OrthoDB: Q6YTW6
- SWISS-MODEL: Q6YTW6
- eggNOG: ENOG502QU15
Sequences
cDNA Sequence
- >LOC_Os07g41900.1
TCCTCGCGACGCGAGTTCGCCCGCCGCCTGCGCCGAGCAGCGCCCCTATCTCCATCCGGCGAGCAGCGGCGCGCCGCCGTCCTGCTGCTTCCGCCGCAGCCTCGCCGCTGCTGAACCCTCATCATGTCCCACGTGAGGTCCGCCCCGGCGGGCAAGTCCGGCGGGGGCGGCGGCTCCACGCCGGCGAAGCGCGGGCGCCCCTTCGGAAGCACCACCGGCAGCGGGGCGGCGGCCGCGGCCGCGGCGGCTGCAATCGGCGACGCGGCGGCGCCGGCCGCGCTGGTTGGGCCGTCCCTCCAAGTCCTCACAGCACTCTCCGATCAGAACAATAAAAGAATTGTTCTTGCATTGCAAAGTGGGTTGAAGAGTGAGATACTATGGGCATTGAACGCCCTTACAGTACTCTCATTTAAGGAGAAGGATGATCTCCGGCGGGATACAACACCTCTTGCTAAAGTTCCTGGGCTCTTGGACGCTCTCCTTCAAGTTATAGATGACTGGCGAGATATTGCAATGCCTAAGGATCATACAAAACCGCCAAGAGTAAGAACATTGGGTGTCAATACAACACTCTCCGGCTTTGGTCATGAGAATGTTGAAAAAGTCTACTCAGACACCACCACTCCTTCAGATGACCAAACAAAGACAGCTGACTCTACTGTCACGAAGAAGCGATCTGCAGGATTTTTGTTTGATGAAGAGGGCCTATTTAATGTTGATGACGAAGGACGAACAGAAAAGCAGCAGTGTGCTGTTGCAGCCTCCAATATAATTCGCAATTTCTCTTTCATGCCAGAAAATGAGACTGTTATGGTTCAACATAGACACTGCTTGGAGACTGTATTTCAGTGCTTAGAAGACCAAAACACTGAAGATGATGAGCTCATAACAAACATGCTTGAGACCCTTGTTAATCTAGCACCTGTCCTGGACCTGAGAATCTTCAGCTCATCAAAGCCATCATTTATTAAAATAACTGAGAAACGTGCAGTTCAAGCCATAATGGGCATGCTTGCATCATCGATTAGGGTGTGGCATTGTGCTGCTGCTGAATTAATTGGGCGGCTGATAATCAATCCAGACAATGAACCATTTCTTCTTCCAGCCATTCCACAGATATACAAGAGACTAGTTGACCTCTTGAGTGTGCCAGCAGTCGATGCACAGGCAGCTGCTATTAGTGCGCTGTACAATGTAGCAGAAGTGAATATGGACTTCCGGCTGAAGCTTGCTAGCGAGCGATGGGCTGTCGATAGACTCCTTAAGGTCGTGAAGACGCCACATCCCGTGCCTGAAGTTTGTAGGAAAGCATCAATGATAGTGGAGAGCCTAGTCTCTGAGCCTCAAAACAGGATGCATCTCCTTGTCCATGAGAATACTTTTGCTGAGATACTCACGTCGGAAGGGAAATACTCCGACACATTTGCAAGGATTCTATATGAGCTGACTGCAAGGCCGAGCAACAAAGTGACAGCAGGGCAAGCTATCTGGGGGAACATAAACTGATGCATCATTGTATTGTTAAAATCTACTAGATAAGATGTACTTTAGTAGCTTAGGTACCTGTTATGTTGAAAATGCCTTGGGTTTCTGACTGTATGTAACAAGCTTTTAGCTGTATTTAGTTGCAGCCTTGCAAGCTTACATTTTAACGCCTTGATCTTCCTTTTCTGAAGTACTACACTTGCTTCCAGAGTTTCAGAGTACTATCTATGATATTTTTTGTTAGGCTTGGAATGGCTGGTATATATTGTAGCATGTTGGTGTTATGAATGCTGCTGGAATTTTCTGCC
CDS Sequence
- >LOC_Os07g41900.1
ATGTCCCACGTGAGGTCCGCCCCGGCGGGCAAGTCCGGCGGGGGCGGCGGCTCCACGCCGGCGAAGCGCGGGCGCCCCTTCGGAAGCACCACCGGCAGCGGGGCGGCGGCCGCGGCCGCGGCGGCTGCAATCGGCGACGCGGCGGCGCCGGCCGCGCTGGTTGGGCCGTCCCTCCAAGTCCTCACAGCACTCTCCGATCAGAACAATAAAAGAATTGTTCTTGCATTGCAAAGTGGGTTGAAGAGTGAGATACTATGGGCATTGAACGCCCTTACAGTACTCTCATTTAAGGAGAAGGATGATCTCCGGCGGGATACAACACCTCTTGCTAAAGTTCCTGGGCTCTTGGACGCTCTCCTTCAAGTTATAGATGACTGGCGAGATATTGCAATGCCTAAGGATCATACAAAACCGCCAAGAGTAAGAACATTGGGTGTCAATACAACACTCTCCGGCTTTGGTCATGAGAATGTTGAAAAAGTCTACTCAGACACCACCACTCCTTCAGATGACCAAACAAAGACAGCTGACTCTACTGTCACGAAGAAGCGATCTGCAGGATTTTTGTTTGATGAAGAGGGCCTATTTAATGTTGATGACGAAGGACGAACAGAAAAGCAGCAGTGTGCTGTTGCAGCCTCCAATATAATTCGCAATTTCTCTTTCATGCCAGAAAATGAGACTGTTATGGTTCAACATAGACACTGCTTGGAGACTGTATTTCAGTGCTTAGAAGACCAAAACACTGAAGATGATGAGCTCATAACAAACATGCTTGAGACCCTTGTTAATCTAGCACCTGTCCTGGACCTGAGAATCTTCAGCTCATCAAAGCCATCATTTATTAAAATAACTGAGAAACGTGCAGTTCAAGCCATAATGGGCATGCTTGCATCATCGATTAGGGTGTGGCATTGTGCTGCTGCTGAATTAATTGGGCGGCTGATAATCAATCCAGACAATGAACCATTTCTTCTTCCAGCCATTCCACAGATATACAAGAGACTAGTTGACCTCTTGAGTGTGCCAGCAGTCGATGCACAGGCAGCTGCTATTAGTGCGCTGTACAATGTAGCAGAAGTGAATATGGACTTCCGGCTGAAGCTTGCTAGCGAGCGATGGGCTGTCGATAGACTCCTTAAGGTCGTGAAGACGCCACATCCCGTGCCTGAAGTTTGTAGGAAAGCATCAATGATAGTGGAGAGCCTAGTCTCTGAGCCTCAAAACAGGATGCATCTCCTTGTCCATGAGAATACTTTTGCTGAGATACTCACGTCGGAAGGGAAATACTCCGACACATTTGCAAGGATTCTATATGAGCTGACTGCAAGGCCGAGCAACAAAGTGACAGCAGGGCAAGCTATCTGGGGGAACATAAACTGA
Protein Sequence
- >LOC_Os07g41900.1
MSHVRSAPAGKSGGGGGSTPAKRGRPFGSTTGSGAAAAAAAAAIGDAAAPAALVGPSLQVLTALSDQNNKRIVLALQSGLKSEILWALNALTVLSFKEKDDLRRDTTPLAKVPGLLDALLQVIDDWRDIAMPKDHTKPPRVRTLGVNTTLSGFGHENVEKVYSDTTTPSDDQTKTADSTVTKKRSAGFLFDEEGLFNVDDEGRTEKQQCAVAASNIIRNFSFMPENETVMVQHRHCLETVFQCLEDQNTEDDELITNMLETLVNLAPVLDLRIFSSSKPSFIKITEKRAVQAIMGMLASSIRVWHCAAAELIGRLIINPDNEPFLLPAIPQIYKRLVDLLSVPAVDAQAAAISALYNVAEVNMDFRLKLASERWAVDRLLKVVKTPHPVPEVCRKASMIVESLVSEPQNRMHLLVHENTFAEILTSEGKYSDTFARILYELTARPSNKVTAGQAIWGNIN*