Gene Details:

Functional Descriptions:

  • OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa.
  • OsLFR depletion resulted in homozygous lethality in the early seed stage through endosperm and embryo defects, which could be successfully recovered by the OsLFR genomic sequence.
  • Transcriptome profiling showed that many genes, involved in DNA replication, cell cycle, cell wall assembly and cell death, were differentially expressed in a knockout mutant of OsLFR (OsLFR-1), which was consistent with the observed seed defects.
  • Cytological observations revealed that the OsLFR endosperm had relatively fewer free nuclei, had abnormal and arrested cellularization, and demonstrated premature programed cell death: the embryo was reduced in size and failed to differentiate.
  • OsLFR was expressed primarily in the rice spikelets and seeds, and the OsLFR protein was localized to the nucleus.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os07g41900.1
    TCCTCGCGACGCGAGTTCGCCCGCCGCCTGCGCCGAGCAGCGCCCCTATCTCCATCCGGCGAGCAGCGGCGCGCCGCCGTCCTGCTGCTTCCGCCGCAGCCTCGCCGCTGCTGAACCCTCATCATGTCCCACGTGAGGTCCGCCCCGGCGGGCAAGTCCGGCGGGGGCGGCGGCTCCACGCCGGCGAAGCGCGGGCGCCCCTTCGGAAGCACCACCGGCAGCGGGGCGGCGGCCGCGGCCGCGGCGGCTGCAATCGGCGACGCGGCGGCGCCGGCCGCGCTGGTTGGGCCGTCCCTCCAAGTCCTCACAGCACTCTCCGATCAGAACAATAAAAGAATTGTTCTTGCATTGCAAAGTGGGTTGAAGAGTGAGATACTATGGGCATTGAACGCCCTTACAGTACTCTCATTTAAGGAGAAGGATGATCTCCGGCGGGATACAACACCTCTTGCTAAAGTTCCTGGGCTCTTGGACGCTCTCCTTCAAGTTATAGATGACTGGCGAGATATTGCAATGCCTAAGGATCATACAAAACCGCCAAGAGTAAGAACATTGGGTGTCAATACAACACTCTCCGGCTTTGGTCATGAGAATGTTGAAAAAGTCTACTCAGACACCACCACTCCTTCAGATGACCAAACAAAGACAGCTGACTCTACTGTCACGAAGAAGCGATCTGCAGGATTTTTGTTTGATGAAGAGGGCCTATTTAATGTTGATGACGAAGGACGAACAGAAAAGCAGCAGTGTGCTGTTGCAGCCTCCAATATAATTCGCAATTTCTCTTTCATGCCAGAAAATGAGACTGTTATGGTTCAACATAGACACTGCTTGGAGACTGTATTTCAGTGCTTAGAAGACCAAAACACTGAAGATGATGAGCTCATAACAAACATGCTTGAGACCCTTGTTAATCTAGCACCTGTCCTGGACCTGAGAATCTTCAGCTCATCAAAGCCATCATTTATTAAAATAACTGAGAAACGTGCAGTTCAAGCCATAATGGGCATGCTTGCATCATCGATTAGGGTGTGGCATTGTGCTGCTGCTGAATTAATTGGGCGGCTGATAATCAATCCAGACAATGAACCATTTCTTCTTCCAGCCATTCCACAGATATACAAGAGACTAGTTGACCTCTTGAGTGTGCCAGCAGTCGATGCACAGGCAGCTGCTATTAGTGCGCTGTACAATGTAGCAGAAGTGAATATGGACTTCCGGCTGAAGCTTGCTAGCGAGCGATGGGCTGTCGATAGACTCCTTAAGGTCGTGAAGACGCCACATCCCGTGCCTGAAGTTTGTAGGAAAGCATCAATGATAGTGGAGAGCCTAGTCTCTGAGCCTCAAAACAGGATGCATCTCCTTGTCCATGAGAATACTTTTGCTGAGATACTCACGTCGGAAGGGAAATACTCCGACACATTTGCAAGGATTCTATATGAGCTGACTGCAAGGCCGAGCAACAAAGTGACAGCAGGGCAAGCTATCTGGGGGAACATAAACTGATGCATCATTGTATTGTTAAAATCTACTAGATAAGATGTACTTTAGTAGCTTAGGTACCTGTTATGTTGAAAATGCCTTGGGTTTCTGACTGTATGTAACAAGCTTTTAGCTGTATTTAGTTGCAGCCTTGCAAGCTTACATTTTAACGCCTTGATCTTCCTTTTCTGAAGTACTACACTTGCTTCCAGAGTTTCAGAGTACTATCTATGATATTTTTTGTTAGGCTTGGAATGGCTGGTATATATTGTAGCATGTTGGTGTTATGAATGCTGCTGGAATTTTCTGCC
CDS Sequence
  • >LOC_Os07g41900.1
    ATGTCCCACGTGAGGTCCGCCCCGGCGGGCAAGTCCGGCGGGGGCGGCGGCTCCACGCCGGCGAAGCGCGGGCGCCCCTTCGGAAGCACCACCGGCAGCGGGGCGGCGGCCGCGGCCGCGGCGGCTGCAATCGGCGACGCGGCGGCGCCGGCCGCGCTGGTTGGGCCGTCCCTCCAAGTCCTCACAGCACTCTCCGATCAGAACAATAAAAGAATTGTTCTTGCATTGCAAAGTGGGTTGAAGAGTGAGATACTATGGGCATTGAACGCCCTTACAGTACTCTCATTTAAGGAGAAGGATGATCTCCGGCGGGATACAACACCTCTTGCTAAAGTTCCTGGGCTCTTGGACGCTCTCCTTCAAGTTATAGATGACTGGCGAGATATTGCAATGCCTAAGGATCATACAAAACCGCCAAGAGTAAGAACATTGGGTGTCAATACAACACTCTCCGGCTTTGGTCATGAGAATGTTGAAAAAGTCTACTCAGACACCACCACTCCTTCAGATGACCAAACAAAGACAGCTGACTCTACTGTCACGAAGAAGCGATCTGCAGGATTTTTGTTTGATGAAGAGGGCCTATTTAATGTTGATGACGAAGGACGAACAGAAAAGCAGCAGTGTGCTGTTGCAGCCTCCAATATAATTCGCAATTTCTCTTTCATGCCAGAAAATGAGACTGTTATGGTTCAACATAGACACTGCTTGGAGACTGTATTTCAGTGCTTAGAAGACCAAAACACTGAAGATGATGAGCTCATAACAAACATGCTTGAGACCCTTGTTAATCTAGCACCTGTCCTGGACCTGAGAATCTTCAGCTCATCAAAGCCATCATTTATTAAAATAACTGAGAAACGTGCAGTTCAAGCCATAATGGGCATGCTTGCATCATCGATTAGGGTGTGGCATTGTGCTGCTGCTGAATTAATTGGGCGGCTGATAATCAATCCAGACAATGAACCATTTCTTCTTCCAGCCATTCCACAGATATACAAGAGACTAGTTGACCTCTTGAGTGTGCCAGCAGTCGATGCACAGGCAGCTGCTATTAGTGCGCTGTACAATGTAGCAGAAGTGAATATGGACTTCCGGCTGAAGCTTGCTAGCGAGCGATGGGCTGTCGATAGACTCCTTAAGGTCGTGAAGACGCCACATCCCGTGCCTGAAGTTTGTAGGAAAGCATCAATGATAGTGGAGAGCCTAGTCTCTGAGCCTCAAAACAGGATGCATCTCCTTGTCCATGAGAATACTTTTGCTGAGATACTCACGTCGGAAGGGAAATACTCCGACACATTTGCAAGGATTCTATATGAGCTGACTGCAAGGCCGAGCAACAAAGTGACAGCAGGGCAAGCTATCTGGGGGAACATAAACTGA
Protein Sequence
  • >LOC_Os07g41900.1
    MSHVRSAPAGKSGGGGGSTPAKRGRPFGSTTGSGAAAAAAAAAIGDAAAPAALVGPSLQVLTALSDQNNKRIVLALQSGLKSEILWALNALTVLSFKEKDDLRRDTTPLAKVPGLLDALLQVIDDWRDIAMPKDHTKPPRVRTLGVNTTLSGFGHENVEKVYSDTTTPSDDQTKTADSTVTKKRSAGFLFDEEGLFNVDDEGRTEKQQCAVAASNIIRNFSFMPENETVMVQHRHCLETVFQCLEDQNTEDDELITNMLETLVNLAPVLDLRIFSSSKPSFIKITEKRAVQAIMGMLASSIRVWHCAAAELIGRLIINPDNEPFLLPAIPQIYKRLVDLLSVPAVDAQAAAISALYNVAEVNMDFRLKLASERWAVDRLLKVVKTPHPVPEVCRKASMIVESLVSEPQNRMHLLVHENTFAEILTSEGKYSDTFARILYELTARPSNKVTAGQAIWGNIN*