Gene Details:
- MSU gene ID: LOC_Os07g41240
- RAPdb gene ID: Os07g0603700
- Gene Symbol: GE CYP78A13
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Overexpression of GE promoted cell proliferation and enhanced rice plant growth and grain yield, but reduced embryo size, sugGEsting that GE is critical for coordinating rice embryo and endosperm development.
- The function of GE in each tissue is distinct, controlling cell size in the embryo and cell death in the endosperm.
- Post-embryonic growth of GE seedling was severely inhibited due to defective shoot apical meristem (SAM) maintenance.
- GE, which encodes CYP78A13, is predominantly expressed in the interfacing tissues of the both embryo and endosperm.
- In contrast to the loss-of-function mutant with larGE embryo and small endosperm, GE overexpression causes a small embryo and enlarGEd endosperm.
- A complementation analysis coupled with heterofertilization showed that complementation of GE mutation in either embryo or endosperm failed to restore the wild-type embryo/endosperm ratio.
- Among GEnes associated with embryo/endosperm size, REDUCED EMBRYO GEnes, whose loss-of-function causes a phenotype opposite to GE, are revealed to regulate endosperm size upstream of GE.
- To fully understand the embryo-endosperm size control, the GEnetic network of the related GEnes should be elucidated.
- However, the molecular mechanism(s) underlying embryo and endosperm development remains larGEly unknown, particularly in rice, the model cereal.
- GE is expressed predominantly in the scutellar epithelium, the interface region between embryo and endosperm.
- Mutation of GE resulted in a larGE embryo in the seed, which was caused by excessive expansion of scutellum cells.
- Moreover, transGEnic Arabidopsis plants overexpressing AtCYP78A10, a GE homolog, also produced bigGEr seeds, implying a conserved role for the CYP78A subfamily of P450s in regulating seed development.
- 2 showed that both can promote grain growth.
- Variations in CYP78A13 coding region influence grain size and yield in rice.
- Grain size is one of the most important determinants of crop yield in cereals.
- Here, we identified a dominant mutant, big grain2 (bg2-D) from our enhancer-trapping population.
- Sequence search revealed that CYP78A13 has a paralogue Grain<U+2005>Length 3.
- Detailed examination of the transgenic plants with chimaeric constructs suggested that variation in CYP78A13 coding region is responsible for the variation of grain yield.
- Taken together, our results suggest that the variations in CYP78A13 in the indica varieties hold potential in rice breeding for application of grain yield improvement.
Function-related keywords:
- grain-yield , grain , cell-death , shoot , meristem , endosperm , yield , seed , seed-development , shoot-apical-meristem , growth , seedling , grain-size , breeding
Literature:
- GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice . DOI: 10.1111/tpj.12223 ; PMID: 23621326
- Control of rice embryo development, shoot apical meristem maintenance, and grain yield by a novel cytochrome p450 . DOI: 10.1093/mp/sst107 ; PMID: 23775595
- Variations in CYP78A13 coding region influence grain size and yield in rice . DOI: 10.1111/pce.12452 ; PMID: 25255828
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os07g41240.1
ACGTCTTCTTCCTCCCAAGAAAACTCCTCTCACTTCGCGAACGCTTCCCATGGCGCTCTCCTCCATGGCCGCGGCGCAAGAGAGCTCCCTCCTCCTCTTCCTCCTCCCGACGTCGGCCGCCTCCGTGTTCCCGCCGCTCATCTCCGTGGTCGTCCTCGCCGCGCTCCTCCTGTGGCTCTCGCCGGGTGGCCCCGCGTGGGCGCTGTCCCGTTGCCGTGGCACGCCGCCGCCGCCGGGCGTGGCGGGGGGCGCGGCCAGCGCGCTGTCCGGCCCTGCCGCGCACCGCGTGCTCGCCGGGATTTCGCGCGCCGTCGAGGGCGGCGCGGCGGTGATGTCGCTCTCCGTCGGCCTCACCCGCCTCGTCGTGGCGAGCCGGCCGGAGACGGCGAGGGAGATCCTCGTCAGCCCGGCGTTCGGCGACCGCCCCGTGAAGGACGCGGCGAGGCAGCTGCTGTTCCACCGCGCCATGGGGTTCGCCCCGTCGGGCGACGCGCACTGGCGCGGGCTCCGCCGCGCCTCCGCGGCGCACCTCTTCGGCCCGCGCCGCGTGGCCGGGTCCGCGCCCGAGCGCGAGGCCATCGGCGCCCGCATAGTCGGCGACGTCGCCTCCCTCATGTCCCGCCGCGGCGAGGTCCCCCTCCGCCGCGTCCTTCACGCCGCGTCGCTCGGCCACGTCATGGCGACCGTCTTCGGCAAGCGGCACGGCGACATCTCGATCCAGGACGGCGAGCTCCTGGAGGAGATGGTCACCGAAGGGTACGACCTCCTCGGCAAGTTCAACTGGGCCGACCACCTGCCATTGCTCAGGTGGCTCGACCTCCAGGGCATCCGCCGCCGGTGCAACAGGCTAGTCCAGAAGGTGGAGGTGTTCGTCGGAAAGATCATACAGGAGCACAAGGCGAAGCGAGCTGCCGGAGGCGTCGCCGTCGCCGACGGCGTCTTGGGCGACTTCGTCGACGTCCTCCTCGACCTCCAGGGAGAGGAGAAGATGTCAGACTCCGACATGATCGCTGTTCTTTGGGAGATGATCTTTAGAGGGACGGACACGGTGGCGATCTTGATGGAGTGGGTGATGGCGAGGATGGTGATGCACCCGGAGATCCAGGCGAAGGCGCAGGCGGAGGTGGACGCCGCCGTGGGGGGACGCCGCGGCCGCGTCGCCGACGGCGACGTGGCGAGCCTCCCCTACATCCAGTCCATCGTGAAGGAGACGCTGCGCATGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCACGACGCGCGCGTCGGTGGCCACGCCGTCCCCGCCGGGACGACGGCGATGGTGAACATGTGGGCGATCGCCCACGACGCCGCCGTCTGGCCGGAGCCGGATGCGTTCCGCCCGGAGCGCTTCTCGGAGGGGGAGGACGTCGGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCGGCGCCGGCCGCCGCGTCTGCCCTGGCAGGATGCTGGCGCTCGCCACCGCCCACCTCTGGCTCGCCCAGCTGCTGCACGCCTTCGACTGGTCCCCCACCGCCGCCGGCGTCGACCTGTCCGAGCGCCTCGGCATGTCGCTGGAGATGGCGGCGCCGCTCGTGTGCAAGGCCGTGGCTAGGGCCTGAGCCCTAGCCGCCGCCGCCGCCATTATTGCCATTGATGTGGCTAGCGACGTTGTCGTGCTCGCATCCATACTCCTCCATAGGCAACTCGTCTAGCCAATGAAGAAAGCTACTATCTATCTATCTATCAAGCTAGCTGCTACTATCACAAACCGCATTTCGGCATCATCTTAAATTAGCTCTTAGGGGTGTAGGCGATTTTGGTTTCCCCCAAAAATTTGCTTTGCCAGTCTTTTGGTTTAAATCGAGGCATTAGTTGTGAAACATCATGAGAAGTTATTTAAATCTGAGGAATTTTGTTTGAACCTTTTCTGGTGTGCT
CDS Sequence
- >LOC_Os07g41240.1
ATGGCGCTCTCCTCCATGGCCGCGGCGCAAGAGAGCTCCCTCCTCCTCTTCCTCCTCCCGACGTCGGCCGCCTCCGTGTTCCCGCCGCTCATCTCCGTGGTCGTCCTCGCCGCGCTCCTCCTGTGGCTCTCGCCGGGTGGCCCCGCGTGGGCGCTGTCCCGTTGCCGTGGCACGCCGCCGCCGCCGGGCGTGGCGGGGGGCGCGGCCAGCGCGCTGTCCGGCCCTGCCGCGCACCGCGTGCTCGCCGGGATTTCGCGCGCCGTCGAGGGCGGCGCGGCGGTGATGTCGCTCTCCGTCGGCCTCACCCGCCTCGTCGTGGCGAGCCGGCCGGAGACGGCGAGGGAGATCCTCGTCAGCCCGGCGTTCGGCGACCGCCCCGTGAAGGACGCGGCGAGGCAGCTGCTGTTCCACCGCGCCATGGGGTTCGCCCCGTCGGGCGACGCGCACTGGCGCGGGCTCCGCCGCGCCTCCGCGGCGCACCTCTTCGGCCCGCGCCGCGTGGCCGGGTCCGCGCCCGAGCGCGAGGCCATCGGCGCCCGCATAGTCGGCGACGTCGCCTCCCTCATGTCCCGCCGCGGCGAGGTCCCCCTCCGCCGCGTCCTTCACGCCGCGTCGCTCGGCCACGTCATGGCGACCGTCTTCGGCAAGCGGCACGGCGACATCTCGATCCAGGACGGCGAGCTCCTGGAGGAGATGGTCACCGAAGGGTACGACCTCCTCGGCAAGTTCAACTGGGCCGACCACCTGCCATTGCTCAGGTGGCTCGACCTCCAGGGCATCCGCCGCCGGTGCAACAGGCTAGTCCAGAAGGTGGAGGTGTTCGTCGGAAAGATCATACAGGAGCACAAGGCGAAGCGAGCTGCCGGAGGCGTCGCCGTCGCCGACGGCGTCTTGGGCGACTTCGTCGACGTCCTCCTCGACCTCCAGGGAGAGGAGAAGATGTCAGACTCCGACATGATCGCTGTTCTTTGGGAGATGATCTTTAGAGGGACGGACACGGTGGCGATCTTGATGGAGTGGGTGATGGCGAGGATGGTGATGCACCCGGAGATCCAGGCGAAGGCGCAGGCGGAGGTGGACGCCGCCGTGGGGGGACGCCGCGGCCGCGTCGCCGACGGCGACGTGGCGAGCCTCCCCTACATCCAGTCCATCGTGAAGGAGACGCTGCGCATGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCACGACGCGCGCGTCGGTGGCCACGCCGTCCCCGCCGGGACGACGGCGATGGTGAACATGTGGGCGATCGCCCACGACGCCGCCGTCTGGCCGGAGCCGGATGCGTTCCGCCCGGAGCGCTTCTCGGAGGGGGAGGACGTCGGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCGGCGCCGGCCGCCGCGTCTGCCCTGGCAGGATGCTGGCGCTCGCCACCGCCCACCTCTGGCTCGCCCAGCTGCTGCACGCCTTCGACTGGTCCCCCACCGCCGCCGGCGTCGACCTGTCCGAGCGCCTCGGCATGTCGCTGGAGATGGCGGCGCCGCTCGTGTGCAAGGCCGTGGCTAGGGCCTGA
Protein Sequence
- >LOC_Os07g41240.1
MALSSMAAAQESSLLLFLLPTSAASVFPPLISVVVLAALLLWLSPGGPAWALSRCRGTPPPPGVAGGAASALSGPAAHRVLAGISRAVEGGAAVMSLSVGLTRLVVASRPETAREILVSPAFGDRPVKDAARQLLFHRAMGFAPSGDAHWRGLRRASAAHLFGPRRVAGSAPEREAIGARIVGDVASLMSRRGEVPLRRVLHAASLGHVMATVFGKRHGDISIQDGELLEEMVTEGYDLLGKFNWADHLPLLRWLDLQGIRRRCNRLVQKVEVFVGKIIQEHKAKRAAGGVAVADGVLGDFVDVLLDLQGEEKMSDSDMIAVLWEMIFRGTDTVAILMEWVMARMVMHPEIQAKAQAEVDAAVGGRRGRVADGDVASLPYIQSIVKETLRMHPPGPLLSWARLAVHDARVGGHAVPAGTTAMVNMWAIAHDAAVWPEPDAFRPERFSEGEDVGVLGGDLRLAPFGAGRRVCPGRMLALATAHLWLAQLLHAFDWSPTAAGVDLSERLGMSLEMAAPLVCKAVARA*