Gene Details:
- MSU gene ID: LOC_Os07g32406
- RAPdb gene ID: Os07g0507500
- Gene Symbol: NY1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Two mutants NY1 (LOC_Os07g32406) and ny2 (LOC_Os07g32040) were generated by CRISPR/Cas9 knockout in neo-tetraploid rice, and which exhibited low pollen fertility and abnormal chromosome behavior.
- An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.
- RESULTS: Here, cytological observations of the NY1 mutant (NY1) indicated that NY1 exhibited abnormal tapetum and middle layer development.
- The mutant of EAT1 was generated by CRISPR/Cas9 that showed abnormal tapetum and pollen wall formation, which was similar to NY1.
Function-related keywords:
- fertility , pollen , development , anther , tapetum , pollen-wall
Literature:
- Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice . DOI: 10.3390/ijms22020841 ; PMID: 33467721
- An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice . DOI: 10.1186/s12870-022-03976-0 ; PMID: 36514007
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os07g32406.1
GCCCTTTCATTGCCCAACCAACGCTCGCCTGCATAGAAGAAGCTCTTCGCCTTCTTTGCTGTGCTCTTGTTGCCTCTCGCTCGCTGCTGCGGCTACTCATTGATCCTGATGGAATCCGCAGAGGCAGAACCAACAAACAAAAGCGTCATTCAGGGAACCCATGAACTAACCGTATGCCAGACGACGGAGAGACTCGACACATGGAAGCTGAATGAGCAGCAGCAACAATTGGTCGATGCAAGCGGGCTCGGCAACCTGATACACACAGCAGGCCTAGTCATCGATCGCATCGCGCTCATGGCATTCTTCGAACTGTGGAGCAAGGAGACCAACACTGCTCAGCTCAATGGCTTTGAAATGGCACCCTCACTCAGGGACGCCGCCTACATACTGGGGATTCCGGTGACAGGCCGTGTGGTGACAACCGGAGCTGTGCTCAACAAGTCGGTCGAAGACCTCTGCTTCCAGTATCTGGGGCAAGTGCCTGATTGCAGGGACTGCAGGGGCAGCCATGTGAAGCTCTCTTGGCTGCAATCCAAGTTTAGCCGGATCCCGGAACGCCCCACCAATGATCAGACCATGTATGGCACCAGGGCATATCTCCTGTTCTTGATTGGATCAGCCTTACTTCCAGAGAGGGACAGGGGCTATGTCTCACCAAAGTATTTGCCACTTCTGTCAGACTTTGACAAGGTACAGGAATATGCTTGGGGTGCTGCTGCTCTTGCTCATCTCTACAAGGCTCTCTCCATCGCCGTGGCCCATTCTGCCAGAAAAAGGCTATTCGGTAGCGCGGCTTTGCTCATGGGCTGGATATATGAGTATATTCCGGCATTGCGCCCTGACATGTATGATCCTCCAGAACACATCTTCCCACGAGTACTCAAGTGGACAGGGAGCACGATCTCTCAACCGGCCAAGAACGTTTCAGACATCAGGAAAGCCTTCGGCCTGCTTCAAGTTTCTGATGTCAACTGGGAGCCCTACAAGGGCGTTGATCCTGCATCCATTCCGAAGCATTGCGCTGCTCCGGATAACCTCTGCTTCTCCAGAACATGGCTGGTCAGCTTCAACCTCAAGGAAATCTACGCCCCGGACCGGTTCGCTCGCCAGTTTGGGCAAGAACAGCATCGCCCGCTCAACGATGTCCCCGCGTTCCAGCGGCAGCTGTGGAACCCGGCAGTGGACTGGAGCCTGATGTACGCTTCAGAGATCGAACGGTTCCAGCAGCTGATCAACGCTGCAGATGGTGGTGATCATGGTCATACAGCAGATGCCGCCGCCGCCGCCGCCGCAGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGGAGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGTCTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGTGATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCGTGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGCAGAAGTGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGACGGGGCGGCGAAGGGATCAGGCGGCGGCGGCGGCGCGGTGCGGCGGAGCAGCCGGAGCTGCGTGCAGGCGAAGAGGTTCAGGCGCGTGGGAGGGAAGGGCTCGCAGTCGTCCGACCCCATCGTGCTGTGAATCTGCGGCCGCTGCTCTCATCAGCTTTGCTACTAGCCTACCAGTAGTGCTACCTTTGCAGTGAACTACGGTTGTGTTCGGTGTCCATGTGTCATGTGTGTTAGGCTTAGGCAGACGGTCGAAGAGCTCTGGTACTGGTACTTACTCCTATGTATGTCGTTGATCGTTGAATTCAGGTTATGTAGCATTTGATTTGACTACTATGGATTTGATGACTACGCTAGATTTAAAAATAAAATAAGCATTGAATTTAAATGCTACTCCCTCTGTCCCAAAATAAACC
CDS Sequence
- >LOC_Os07g32406.1
ATGGAATCCGCAGAGGCAGAACCAACAAACAAAAGCGTCATTCAGGGAACCCATGAACTAACCGTATGCCAGACGACGGAGAGACTCGACACATGGAAGCTGAATGAGCAGCAGCAACAATTGGTCGATGCAAGCGGGCTCGGCAACCTGATACACACAGCAGGCCTAGTCATCGATCGCATCGCGCTCATGGCATTCTTCGAACTGTGGAGCAAGGAGACCAACACTGCTCAGCTCAATGGCTTTGAAATGGCACCCTCACTCAGGGACGCCGCCTACATACTGGGGATTCCGGTGACAGGCCGTGTGGTGACAACCGGAGCTGTGCTCAACAAGTCGGTCGAAGACCTCTGCTTCCAGTATCTGGGGCAAGTGCCTGATTGCAGGGACTGCAGGGGCAGCCATGTGAAGCTCTCTTGGCTGCAATCCAAGTTTAGCCGGATCCCGGAACGCCCCACCAATGATCAGACCATGTATGGCACCAGGGCATATCTCCTGTTCTTGATTGGATCAGCCTTACTTCCAGAGAGGGACAGGGGCTATGTCTCACCAAAGTATTTGCCACTTCTGTCAGACTTTGACAAGGTACAGGAATATGCTTGGGGTGCTGCTGCTCTTGCTCATCTCTACAAGGCTCTCTCCATCGCCGTGGCCCATTCTGCCAGAAAAAGGCTATTCGGTAGCGCGGCTTTGCTCATGGGCTGGATATATGAGTATATTCCGGCATTGCGCCCTGACATGTATGATCCTCCAGAACACATCTTCCCACGAGTACTCAAGTGGACAGGGAGCACGATCTCTCAACCGGCCAAGAACGTTTCAGACATCAGGAAAGCCTTCGGCCTGCTTCAAGTTTCTGATGTCAACTGGGAGCCCTACAAGGGCGTTGATCCTGCATCCATTCCGAAGCATTGCGCTGCTCCGGATAACCTCTGCTTCTCCAGAACATGGCTGGTCAGCTTCAACCTCAAGGAAATCTACGCCCCGGACCGGTTCGCTCGCCAGTTTGGGCAAGAACAGCATCGCCCGCTCAACGATGTCCCCGCGTTCCAGCGGCAGCTGTGGAACCCGGCAGTGGACTGGAGCCTGATGTACGCTTCAGAGATCGAACGGTTCCAGCAGCTGATCAACGCTGCAGATGGTGGTGATCATGGTCATACAGCAGATGCCGCCGCCGCCGCCGCCGCAGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGGAGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGTCTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGTGATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCGTGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGCAGAAGTGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGACGGGGCGGCGAAGGGATCAGGCGGCGGCGGCGGCGCGGTGCGGCGGAGCAGCCGGAGCTGCGTGCAGGCGAAGAGGTTCAGGCGCGTGGGAGGGAAGGGCTCGCAGTCGTCCGACCCCATCGTGCTGTGA
Protein Sequence
- >LOC_Os07g32406.1
MESAEAEPTNKSVIQGTHELTVCQTTERLDTWKLNEQQQQLVDASGLGNLIHTAGLVIDRIALMAFFELWSKETNTAQLNGFEMAPSLRDAAYILGIPVTGRVVTTGAVLNKSVEDLCFQYLGQVPDCRDCRGSHVKLSWLQSKFSRIPERPTNDQTMYGTRAYLLFLIGSALLPERDRGYVSPKYLPLLSDFDKVQEYAWGAAALAHLYKALSIAVAHSARKRLFGSAALLMGWIYEYIPALRPDMYDPPEHIFPRVLKWTGSTISQPAKNVSDIRKAFGLLQVSDVNWEPYKGVDPASIPKHCAAPDNLCFSRTWLVSFNLKEIYAPDRFARQFGQEQHRPLNDVPAFQRQLWNPAVDWSLMYASEIERFQQLINAADGGDHGHTADAAAAAAADVFTPATMARASLGLSLISVVEGVREELPTVARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQPQPQVIAVIPPLAVMPPREQEAPHGTGDAEAPGIVRGDADDDDAVPPKERSDEQQQQDEEEEEEEEQKWRRRRRREEEDGAAKGSGGGGGAVRRSSRSCVQAKRFRRVGGKGSQSSDPIVL*