Information report for NY1
Gene Details
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Functional Descriptions
- Two mutants NY1 (LOC_Os07g32406) and ny2 (LOC_Os07g32040) were generated by CRISPR/Cas9 knockout in neo-tetraploid rice, and which exhibited low pollen fertility and abnormal chromosome behavior.
- An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.
- RESULTS: Here, cytological observations of the NY1 mutant (NY1) indicated that NY1 exhibited abnormal tapetum and middle layer development.
- The mutant of EAT1 was generated by CRISPR/Cas9 that showed abnormal tapetum and pollen wall formation, which was similar to NY1.
Functional Keywords
- fertility , pollen , development , anther , tapetum , pollen-wall
Literature and News
- Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with Pollen Fertility in Tetraploid Rice . DOI: 10.3390/ijms22020841 ; PMID: 33467721
- An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice . DOI: 10.1186/s12870-022-03976-0 ; PMID: 36514007
Gene Resources
- UniProt: Q8H3F8
- EMBL: AK100690, AP014963
- AlphaFoldDB: Q8H3F8
- EnsemblPlants: Os07t0507500-01
- Gramene: Os07t0507500-01
- Orthologous matrix: FENIQEY
- InterPro: IPR019557, IPR044824
- PANTHER: PTHR46033, PTHR46033:SF1
- OrthoDB: Q8H3F8
- eggNOG: ENOG502QW7G
Sequences
cDNA Sequence
- >LOC_Os07g32406.1
GCCCTTTCATTGCCCAACCAACGCTCGCCTGCATAGAAGAAGCTCTTCGCCTTCTTTGCTGTGCTCTTGTTGCCTCTCGCTCGCTGCTGCGGCTACTCATTGATCCTGATGGAATCCGCAGAGGCAGAACCAACAAACAAAAGCGTCATTCAGGGAACCCATGAACTAACCGTATGCCAGACGACGGAGAGACTCGACACATGGAAGCTGAATGAGCAGCAGCAACAATTGGTCGATGCAAGCGGGCTCGGCAACCTGATACACACAGCAGGCCTAGTCATCGATCGCATCGCGCTCATGGCATTCTTCGAACTGTGGAGCAAGGAGACCAACACTGCTCAGCTCAATGGCTTTGAAATGGCACCCTCACTCAGGGACGCCGCCTACATACTGGGGATTCCGGTGACAGGCCGTGTGGTGACAACCGGAGCTGTGCTCAACAAGTCGGTCGAAGACCTCTGCTTCCAGTATCTGGGGCAAGTGCCTGATTGCAGGGACTGCAGGGGCAGCCATGTGAAGCTCTCTTGGCTGCAATCCAAGTTTAGCCGGATCCCGGAACGCCCCACCAATGATCAGACCATGTATGGCACCAGGGCATATCTCCTGTTCTTGATTGGATCAGCCTTACTTCCAGAGAGGGACAGGGGCTATGTCTCACCAAAGTATTTGCCACTTCTGTCAGACTTTGACAAGGTACAGGAATATGCTTGGGGTGCTGCTGCTCTTGCTCATCTCTACAAGGCTCTCTCCATCGCCGTGGCCCATTCTGCCAGAAAAAGGCTATTCGGTAGCGCGGCTTTGCTCATGGGCTGGATATATGAGTATATTCCGGCATTGCGCCCTGACATGTATGATCCTCCAGAACACATCTTCCCACGAGTACTCAAGTGGACAGGGAGCACGATCTCTCAACCGGCCAAGAACGTTTCAGACATCAGGAAAGCCTTCGGCCTGCTTCAAGTTTCTGATGTCAACTGGGAGCCCTACAAGGGCGTTGATCCTGCATCCATTCCGAAGCATTGCGCTGCTCCGGATAACCTCTGCTTCTCCAGAACATGGCTGGTCAGCTTCAACCTCAAGGAAATCTACGCCCCGGACCGGTTCGCTCGCCAGTTTGGGCAAGAACAGCATCGCCCGCTCAACGATGTCCCCGCGTTCCAGCGGCAGCTGTGGAACCCGGCAGTGGACTGGAGCCTGATGTACGCTTCAGAGATCGAACGGTTCCAGCAGCTGATCAACGCTGCAGATGGTGGTGATCATGGTCATACAGCAGATGCCGCCGCCGCCGCCGCCGCAGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGGAGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGTCTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGTGATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCGTGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGCAGAAGTGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGACGGGGCGGCGAAGGGATCAGGCGGCGGCGGCGGCGCGGTGCGGCGGAGCAGCCGGAGCTGCGTGCAGGCGAAGAGGTTCAGGCGCGTGGGAGGGAAGGGCTCGCAGTCGTCCGACCCCATCGTGCTGTGAATCTGCGGCCGCTGCTCTCATCAGCTTTGCTACTAGCCTACCAGTAGTGCTACCTTTGCAGTGAACTACGGTTGTGTTCGGTGTCCATGTGTCATGTGTGTTAGGCTTAGGCAGACGGTCGAAGAGCTCTGGTACTGGTACTTACTCCTATGTATGTCGTTGATCGTTGAATTCAGGTTATGTAGCATTTGATTTGACTACTATGGATTTGATGACTACGCTAGATTTAAAAATAAAATAAGCATTGAATTTAAATGCTACTCCCTCTGTCCCAAAATAAACC
CDS Sequence
- >LOC_Os07g32406.1
ATGGAATCCGCAGAGGCAGAACCAACAAACAAAAGCGTCATTCAGGGAACCCATGAACTAACCGTATGCCAGACGACGGAGAGACTCGACACATGGAAGCTGAATGAGCAGCAGCAACAATTGGTCGATGCAAGCGGGCTCGGCAACCTGATACACACAGCAGGCCTAGTCATCGATCGCATCGCGCTCATGGCATTCTTCGAACTGTGGAGCAAGGAGACCAACACTGCTCAGCTCAATGGCTTTGAAATGGCACCCTCACTCAGGGACGCCGCCTACATACTGGGGATTCCGGTGACAGGCCGTGTGGTGACAACCGGAGCTGTGCTCAACAAGTCGGTCGAAGACCTCTGCTTCCAGTATCTGGGGCAAGTGCCTGATTGCAGGGACTGCAGGGGCAGCCATGTGAAGCTCTCTTGGCTGCAATCCAAGTTTAGCCGGATCCCGGAACGCCCCACCAATGATCAGACCATGTATGGCACCAGGGCATATCTCCTGTTCTTGATTGGATCAGCCTTACTTCCAGAGAGGGACAGGGGCTATGTCTCACCAAAGTATTTGCCACTTCTGTCAGACTTTGACAAGGTACAGGAATATGCTTGGGGTGCTGCTGCTCTTGCTCATCTCTACAAGGCTCTCTCCATCGCCGTGGCCCATTCTGCCAGAAAAAGGCTATTCGGTAGCGCGGCTTTGCTCATGGGCTGGATATATGAGTATATTCCGGCATTGCGCCCTGACATGTATGATCCTCCAGAACACATCTTCCCACGAGTACTCAAGTGGACAGGGAGCACGATCTCTCAACCGGCCAAGAACGTTTCAGACATCAGGAAAGCCTTCGGCCTGCTTCAAGTTTCTGATGTCAACTGGGAGCCCTACAAGGGCGTTGATCCTGCATCCATTCCGAAGCATTGCGCTGCTCCGGATAACCTCTGCTTCTCCAGAACATGGCTGGTCAGCTTCAACCTCAAGGAAATCTACGCCCCGGACCGGTTCGCTCGCCAGTTTGGGCAAGAACAGCATCGCCCGCTCAACGATGTCCCCGCGTTCCAGCGGCAGCTGTGGAACCCGGCAGTGGACTGGAGCCTGATGTACGCTTCAGAGATCGAACGGTTCCAGCAGCTGATCAACGCTGCAGATGGTGGTGATCATGGTCATACAGCAGATGCCGCCGCCGCCGCCGCCGCAGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGGAGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGTCTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGTGATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCGTGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGCAGAAGTGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGACGGGGCGGCGAAGGGATCAGGCGGCGGCGGCGGCGCGGTGCGGCGGAGCAGCCGGAGCTGCGTGCAGGCGAAGAGGTTCAGGCGCGTGGGAGGGAAGGGCTCGCAGTCGTCCGACCCCATCGTGCTGTGA
Protein Sequence
- >LOC_Os07g32406.1
MESAEAEPTNKSVIQGTHELTVCQTTERLDTWKLNEQQQQLVDASGLGNLIHTAGLVIDRIALMAFFELWSKETNTAQLNGFEMAPSLRDAAYILGIPVTGRVVTTGAVLNKSVEDLCFQYLGQVPDCRDCRGSHVKLSWLQSKFSRIPERPTNDQTMYGTRAYLLFLIGSALLPERDRGYVSPKYLPLLSDFDKVQEYAWGAAALAHLYKALSIAVAHSARKRLFGSAALLMGWIYEYIPALRPDMYDPPEHIFPRVLKWTGSTISQPAKNVSDIRKAFGLLQVSDVNWEPYKGVDPASIPKHCAAPDNLCFSRTWLVSFNLKEIYAPDRFARQFGQEQHRPLNDVPAFQRQLWNPAVDWSLMYASEIERFQQLINAADGGDHGHTADAAAAAAADVFTPATMARASLGLSLISVVEGVREELPTVARFLEQHRLPAELATSLSRIRGLIEASPPAPPLKRGDAAPQPQPQVIAVIPPLAVMPPREQEAPHGTGDAEAPGIVRGDADDDDAVPPKERSDEQQQQDEEEEEEEEQKWRRRRRREEEDGAAKGSGGGGGAVRRSSRSCVQAKRFRRVGGKGSQSSDPIVL*