Information report for OsYUCCA6;OsYUC6
Gene Details
|
|
Functional Descriptions
- Based on RNA-seq and qPCR analyses, we determined that GA regulates local auxin biosynthesis and polar auxin transport by modulating the expression of OsYUCCA6 and PIN.
Functional Keywords
- auxin , ga , auxin-transport , GA , auxin-biosynthesis
Literature and News
- Auxin biosynthesis by the YUCCA genes in rice . DOI: 10.1104/pp.106.091561 ; PMID: 17220367
- Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice . DOI: 10.1016/j.plantsci.2020.110545 ; PMID: 32771158
- The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants . DOI: 10.1186/s12284-020-00446-9 ; PMID: 33409665
Gene Resources
- UniProt: Q7XHL8
- EMBL: AP014963
- AlphaFoldDB: Q7XHL8
- EnsemblPlants: Os07t0437000-01
- Gramene: Os07t0437000-01
- Orthologous matrix: IDTCMMA
- InterPro: IPR000960, IPR020946, IPR036188
- PANTHER: PTHR43539, PTHR43539:SF20
- SUPFAM: SSF51905
- PROSITE: PS51257
- Gene3D: 3.50.50.60
- OrthoDB: Q7XHL8
- SWISS-MODEL: Q7XHL8
- eggNOG: KOG1399
Sequences
cDNA Sequence
- >LOC_Os07g25540.1
ATGGCGGCGAGGGTGGTGTGGGTGAACGGGCCGATCGTGGTCGGGGCGGGGCCGGCGGGGCTGTCGGTGGCGGCGTGCCTGCGCGAGCGCGGCGTGCCGTCGGTGCTCCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGCGCCGCACCTACGACCGCCTCCGCCTCCACCTCCCCAAGCACTTCTGCGAGCTCCCCGGGATGCCCTTCCCGGACGGCTACCCGGAGTACCCCGACCGCCGCCAGTTCGTCGACTACCTCCAGGCCTACGCCGCGCGCGCCGGCGTCGAGCCGCGCTTCAACCAGTCCGTCACCTCCGCGCGCTACGACGACGCCGCGGGGCTCTGGCGCGTGCGCGCCGAGGACGTCAGCGTCGATGCGGCGGGCGACGTCACGGAGTACATCGGGCGGTGGCTGGTGGTGGCCACGGGGGAGAACGCGGAGCGCGTCGTGCCGGAGATCGACGGCGCGGACGACTTCGAGGGCCCCGTGTCCCACGTCGCCGAGTACAAGTCCGGCGCCGCGTACCGCGGCAAGCGCGTCCTCGTCGTCGGCTGCGGCAACTCCGGCATGGAGGTCTGCCTCGACCTCTGCCACCACAATGCCCTCCCCGCCATGGTCGTCCGGGACTCGAAGGTGCACGTCCTGCCGCGGGAGATGCTGGGCGTGGCGACGTTCTCGGTGGCCGTCTTCCTCCTCCGGTTCCTGCCGCTGTGGGTGGTGGACAGGATCCTGGTCGTCCTGGCATGGCTCTTCCTCGGCGACCTCGCCAAGATCGGCATCACCAGGCCATCCAGGGGGCCCCTCGAGCTCAAGAACACCAGGGGGAGGACGCCCGTGCTCGACATCGGCGCGCTCGCCAGGATCCGCTCCGGCGACATCGAGGTCGTGCCCGGGATCAGGAGGCTCCTCCGCGGCGGCGCCGAGCTCGTCGACGGCCGCCGCGTCCCGGCCGACGCCGTCATACTGGCCACCGGATACCAAAGCAACGTCCCCCAGTGGCTCAAGGGAAGTGACTTCTTCACACAAGAGGGGTACCCAAGGGTGCCATTCCCAGATGGTTGGAAGGGGGAGTCAGGGCTCTACTCTGTTGGCTTCACAAGGAGAGGCCTCTCTGGTGTCTCCTCAGATGCTGTTAAGGTTGCACAGGACATTGCCATGGCATGGAACCACCAAACCGCCACCACAAGATGATTGATTTAACTTGCTAAGGAATTAACCATGATCAGCTTGCTAACTGCAAACAAATTGCAATTAATCAAATATCTTGAGGCGCAACATGGCACTCAACTGGCTAAGAACTGCATGCTACAAACTCTGTTCAGAGACAGACACCAAAATATTCAGAAACCAAGTCAGGGTCCAAAAAAAAACTATAAAACAGGGGGGAGATGAAGCTTCAGAGTAGATGAAGCTTCAGAGTTCAGGAGATGGATGCCACAACAAAGGGGAAAAAAAGGGGTGCTATGGATGCTAGGTTTAACATTGATGAGGAGGCCAGATTAAGATGCATCAAGTAGAGCCCAAATTTTGTTGTACCCATGGGCCTTTATGTACAGAATGTTATGTAGTGGAGCTTGTGTACATCTAATGGTTGGTAGGGAATCTAGAGTTGACATTCATATGTACTTGGTTAATGTTTACGTAATATGGAGGTGATGATGATGAGACGCAATTTCGATTTATAATATTTCTTAAGTTTTTTTAAAAAAATTAATAAATAGCCTTTAGTAAA
CDS Sequence
- >LOC_Os07g25540.1
ATGGCGGCGAGGGTGGTGTGGGTGAACGGGCCGATCGTGGTCGGGGCGGGGCCGGCGGGGCTGTCGGTGGCGGCGTGCCTGCGCGAGCGCGGCGTGCCGTCGGTGCTCCTGGAGCGCGCCGACTGCATCGCGTCGCTGTGGCAGCGCCGCACCTACGACCGCCTCCGCCTCCACCTCCCCAAGCACTTCTGCGAGCTCCCCGGGATGCCCTTCCCGGACGGCTACCCGGAGTACCCCGACCGCCGCCAGTTCGTCGACTACCTCCAGGCCTACGCCGCGCGCGCCGGCGTCGAGCCGCGCTTCAACCAGTCCGTCACCTCCGCGCGCTACGACGACGCCGCGGGGCTCTGGCGCGTGCGCGCCGAGGACGTCAGCGTCGATGCGGCGGGCGACGTCACGGAGTACATCGGGCGGTGGCTGGTGGTGGCCACGGGGGAGAACGCGGAGCGCGTCGTGCCGGAGATCGACGGCGCGGACGACTTCGAGGGCCCCGTGTCCCACGTCGCCGAGTACAAGTCCGGCGCCGCGTACCGCGGCAAGCGCGTCCTCGTCGTCGGCTGCGGCAACTCCGGCATGGAGGTCTGCCTCGACCTCTGCCACCACAATGCCCTCCCCGCCATGGTCGTCCGGGACTCGAAGGTGCACGTCCTGCCGCGGGAGATGCTGGGCGTGGCGACGTTCTCGGTGGCCGTCTTCCTCCTCCGGTTCCTGCCGCTGTGGGTGGTGGACAGGATCCTGGTCGTCCTGGCATGGCTCTTCCTCGGCGACCTCGCCAAGATCGGCATCACCAGGCCATCCAGGGGGCCCCTCGAGCTCAAGAACACCAGGGGGAGGACGCCCGTGCTCGACATCGGCGCGCTCGCCAGGATCCGCTCCGGCGACATCGAGGTCGTGCCCGGGATCAGGAGGCTCCTCCGCGGCGGCGCCGAGCTCGTCGACGGCCGCCGCGTCCCGGCCGACGCCGTCATACTGGCCACCGGATACCAAAGCAACGTCCCCCAGTGGCTCAAGGGAAGTGACTTCTTCACACAAGAGGGGTACCCAAGGGTGCCATTCCCAGATGGTTGGAAGGGGGAGTCAGGGCTCTACTCTGTTGGCTTCACAAGGAGAGGCCTCTCTGGTGTCTCCTCAGATGCTGTTAAGGTTGCACAGGACATTGCCATGGCATGGAACCACCAAACCGCCACCACAAGATGA
Protein Sequence
- >LOC_Os07g25540.1
MAARVVWVNGPIVVGAGPAGLSVAACLRERGVPSVLLERADCIASLWQRRTYDRLRLHLPKHFCELPGMPFPDGYPEYPDRRQFVDYLQAYAARAGVEPRFNQSVTSARYDDAAGLWRVRAEDVSVDAAGDVTEYIGRWLVVATGENAERVVPEIDGADDFEGPVSHVAEYKSGAAYRGKRVLVVGCGNSGMEVCLDLCHHNALPAMVVRDSKVHVLPREMLGVATFSVAVFLLRFLPLWVVDRILVVLAWLFLGDLAKIGITRPSRGPLELKNTRGRTPVLDIGALARIRSGDIEVVPGIRRLLRGGAELVDGRRVPADAVILATGYQSNVPQWLKGSDFFTQEGYPRVPFPDGWKGESGLYSVGFTRRGLSGVSSDAVKVAQDIAMAWNHQTATTR*