Information report for OsYABBY1;OsYAB1
Gene Details
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Functional Descriptions
- Unlike the Arabidopsis YABBY genes, however, the OsYAB1 gene does not show polar expression pattern in the tissues of floral organs.
- Our transgenic plants that ectopically expressed OsYAB1 were normal during the vegetative growth period, but then showed abnormalities in their floral structures.
- RNA gel-blot analysis showed that the OsYAB1 gene is preferentially expressed in flowers.
- OsYABBY1 is expressed in putative precursor cells of both the mestome sheath in the large vascular bundle and the abaxial sclerenchyma in the leaves.
- In the flower, OsYABBY1 is specifically expressed in the palea and lemma from their inception, and is confined to several cell layers of these organs in the later developmental stages.
- These results suggest that OsYAB1 plays a major role in meristem development and maintenance of stamens and carpels, rather than in determining polarity.
- Ectopic expression of OsYAB1 causes extra stamens and carpels in rice.
Functional Keywords
- floral , flower , vascular-bundle , lemma , sheath , growth , meristem , vegetative , palea , stamen
Literature and News
- Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1 . DOI: 10.1007/s00438-006-0202-0 ; PMID: 17216490
- Ectopic expression of OsYAB1 causes extra stamens and carpels in rice . DOI: 10.1007/s11103-004-2648-y ; PMID: 15604733
- Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses . DOI: 10.1007/s11103-007-9270-8 ; PMID: 18049796
- The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism . DOI: 10.1104/pp.107.096586 ; PMID: 17369428
Gene Resources
- UniProt: Q7XIM7
- EMBL: AB274013, AF098752, AK070045
- AlphaFoldDB: Q7XIM7
- EnsemblPlants: Os07t0160100-02
- Gramene: Os07t0160100-02
- KEGG: dosa:Os07g0160100
- Orthologous matrix: GPFHQAR
- InterPro: IPR006780, IPR036910
- PANTHER: PTHR31675, PTHR31675:SF53
- SUPFAM: SSF47095
- Gene3D: 1.10.30.10
- OrthoDB: Q7XIM7
- SWISS-MODEL: Q7XIM7
- Conserved Domain Database: cd00084
- eggNOG: ENOG502R9GD
Sequences
cDNA Sequence
- >LOC_Os07g06620.1
GATCAGCCAGCAGCTGGTAGTACCCTCTCTAGCTTATTGCAGGGCCATATCCTCTGCTAGCTTAGCTTCTCTCACAAACCCCTTAATTCCATCTCATAGACAGCCAAAAGGGTCAAGAGGAAATTGGGTTTGTGCTCTCCCCAAAATCCTCCATATATAGTGCACAGGAGGCATCATTCTGTTCATACATATCTCTCCCTTGCTTGCTTTGCTCCTGGATATATAGCTAGCTTCTTTCTTTCTTCCTCTCTCCCTGTGTGGCACGCGCCTCCAATCGATCTCTTCGGTGAGTAGACGCATCGAGATCGGGGGGAAATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAATCGCGGCGGCGCGGCCTGCCGGCCGGCCACCGATCGCCGGCGTGCACGCCGGCGCGCGGCGGCGGCCGGTCGAGAATGCGCGCGCAGGAGGGACGACGACGATATATTATTATCGCGTGTGCCCCTCTCTCTTCGCCGCGTAATTAATTAATCAGTTAATTAATTACGTACGACCTACTGTGTTATGCTATCGATCCGTGTTAATTAATTACCTACGTATCTTGATTAATTAGTCTCGTATTATACGTACTATTATACGTACGTGCTGTGCTATGTACGTAGACAACAAAAAAAAATGTGCGTGATGAGTTCTACTACGTACGTACGTACTGTGTTCTAGTGTTTTAATTTGTATCCGAACCAAGGAGTTGTTTAATTAACTGCATGCACATGCACTGGACTTGAATCTGGAGTATTATGTAAGTGTGCATGCATGCTGGATTATGCAAAATAAACGAATTAATGAATAGAACTGTTTTTGTTAATTAATTAATTAAAATGTTTGGTTCAATTTTTCGATGTGTTGATAGTGCATGAATTAAAGCTGTGTACATA - >LOC_Os07g06620.4
GATCAGCCAGCAGCTGGTAGTACCCTCTCTAGCTTATTGCAGGGCCATATCCTCTGCTAGCTTAGCTTCTCTCACAAACCCCTTAATTCCATCTCATAGACAGCCAAAAGGGTCAAGAGGAAATTGGGTTTGTGCTCTCCCCAAAATCCTCCATATATAGTGCACAGGAGGCATCATTCTGTTCATACATATCTCTCCCTTGCTTGCTTTGCTCCTGGATATATAGCTAGCTTCTTTCTTTCTTCCTCTCTCCCTGTGTGGCACGCGCCTCCAATCGATCTCTTCGGTGAGTAGACGCATCGAGATCGGGGGGAAATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAATCGCGGCGGCGCGGCCTGCCGGCCGGCCACCGATCGCCGGCGTGCACGCCGGCGCGCGGCGGCGGCCGGTCGAGAATGCGCGCGCAGGAGGGACGACGACGATATATTATTATCGCGTGTGCCCCTCTCTCTTCGCCGCGTAATTAATTAATCAGTTAATTAATTACGTACGACCTACTGTGTTATGCTATCGATCCGTGTTAATTAATTACCTACGTATCTTGATTAATTAGTCTCGTATTATACGTACTATTATACGTACGTGCTGTGCTATGTACGTAGACAACAAAAAAAAATGTGCGTGATGAGTTCTACTACGTACGTACGTACTGTGTTCTAGTGTTTTAATTTGTATCCGAACCAAGGAGTTGTTTAATTAACTGCATGCACATGCACTGGACTTGAATCTGGAGTATTATGTAAGTGTGCATGCATGCTGGATTATGCAAAATAAACGAATTAATGAATAGAACTGTTTTTGTTAATTAATTAATTAAAATGTTTGGTTCAATTTTTCGATGTGTTGATAGTGCATGAATTAAAGCTGTGTACATA - >LOC_Os07g06620.2
GATCAGCCAGCAGCTGGTAGTACCCTCTCTAGCTTATTGCAGGGCCATATCCTCTGCTAGCTTAGCTTCTCTCACAAACCCCTTAATTCCATCTCATAGACAGCCAAAAGGGTCAAGAGGAAATTGGGTTTGTGCTCTCCCCAAAATCCTCCATATATAGTGCACAGGAGGCATCATTCTGTTCATACATATCTCTCCCTTGCTTGCTTTGCTCCTGGATATATAGCTAGCTTCTTTCTTTCTTCCTCTCTCCCTGTGTGGCACGCGCCTCCAATCGATCTCTTCGGTGAGTAGACGCATCGAGATCGGGGGGAAATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAATCGCGGCGGCGCGGCCTGCCGGCCGGCCACCGATCGCCGGCGTGCACGCCGGCGCGCGGCGGCGGCCGGTCGAGAATGCGCGCGCAGGAGGGACGACGACGATATATTATTATCGCGTGTGCCCCTCTCTCTTCGCCGCGTAATTAATTAATCAGTTAATTAATTACGTACGACCTACTGTGTTATGCTATCGATCCGTGTTAATTAATTACCTACGTATCTTGATTAATTAGTCTCGTATTATACGTACTATTATACGTACGTGCTGTGCTATGTACGTAGACAACAAAAAAAAATGTGCGTGATGAGTTCTACTACGTACGTACGTACTGTGTTCTAGTGTTTTAATTTGTATCCGAACCAAGGAGTTGTTTAATTAACTGCATGCACATGCACTGGACTTGAATCTGGAGTATTATGTAAGTGTGCATGCATGCTGGATTATGCAAAATAAACGAATTAATGAATAGAACTGTTTTTGTTAATTAATTAATTAAAATGTTTGGTTCAATTTTTCGATGTGTTGATAGTGCATGAATTAAAGCTGTGTACATA - >LOC_Os07g06620.3
GATCAGCCAGCAGCTGGTAGTACCCTCTCTAGCTTATTGCAGGGCCATATCCTCTGCTAGCTTAGCTTCTCTCACAAACCCCTTAATTCCATCTCATAGACAGCCAAAAGGGTCAAGAGGAAATTGGGTTTGTGCTCTCCCCAAAATCCTCCATATATAGTGCACAGGAGGCATCATTCTGTTCATACATATCTCTCCCTTGCTTGCTTTGCTCCTGGATATATAGCTAGCTTCTTTCTTTCTTCCTCTCTCCCTGTGTGGCACGCGCCTCCAATCGATCTCTTCGGTGAGTAGACGCATCGAGATCGGGGGGAAATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAATCGCGGCGGCGCGGCCTGCCGGCCGGCCACCGATCGCCGGCGTGCACGCCGGCGCGCGGCGGCGGCCGGTCGAGAATGCGCGCGCAGGAGGGACGACGACGATATATTATTATCGCGTGTGCCCCTCTCTCTTCGCCGCGTAATTAATTAATCAGTTAATTAATTACGTACGACCTACTGTGTTATGCTATCGATCCGTGTTAATTAATTACCTACGTATCTTGATTAATTAGTCTCGTATTATACGTACTATTATACGTACGTGCTGTGCTATGTACGTAGACAACAAAAAAAAATGTGCGTGATGAGTTCTACTACGTACGTACGTACTGTGTTCTAGTGTTTTAATTTGTATCCGAACCAAGGAGTTGTTTAATTAACTGCATGCACATGCACTGGACTTGAATCTGGAGTATTATGTAAGTGTGCATGCATGCTGGATTATGCAAAATAAACGAATTAATGAATAGAACTGTTTTTGTTAATTAATTAATTAAAATGTTTGGTTCAATTTTTCGATGTGTTGATAGTGCATGAATTAAAGCTGTGTACATA
CDS Sequence
- >LOC_Os07g06620.1
ATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAA - >LOC_Os07g06620.4
ATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAA - >LOC_Os07g06620.2
ATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAA - >LOC_Os07g06620.3
ATGTCGGTCCAGTTTACATCGGAGCATGTTTGCTATGTCAACTGCAACTATTGCAACACTATCCTTGTGGTGAATGTGCCAAACAATTGTTCCTACAACATTGTGACTGTTAGATGTGGGCATTGCACAATGGTGCTCTCCATGGATCTTGCTCCTTTTCACCAAGCACGCACTGTTCAAGATCACCAGGTACAGAACAGAGGATTTCAAGGTAATAACTTTGGAAGCTATGACATAGCTTCCAGAAATCAGAGGACATCGACAGCCATGTACCCAATGCCAACCAGTCAGCAGCAAGTGTCACCTATACGTCCCCCTGAGAAAAGACAGCGTGTCCCATCTGCATACAACAGATTCATCAAGGAGGAGATACAGAGGATTAAAACCAGCAATCCTGAGATTAGCCACAGGGAGGCATTCAGTGCTGCTGCAAAGAACTGGGCTCATCTTCCCCGGCTCCATTTTGGCCTCAGCGTCGCCGACGGCGGCGGCGGCGGCGGCAGCAACTAA
Protein Sequence
- >LOC_Os07g06620.1
MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGGGGGSN* - >LOC_Os07g06620.4
MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGGGGGSN* - >LOC_Os07g06620.2
MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGGGGGSN* - >LOC_Os07g06620.3
MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSVADGGGGGGSN*