Information report for HMGB1;OsHMGB1
Gene Details
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Functional Descriptions
Literature and News
Gene Resources
- UniProt: Q5Z7N3
- EMBL: AK062226, AP014962, EU847026
- AlphaFoldDB: Q5Z7N3
- EnsemblPlants: Os06t0728000-01, Os06t0728000-02
- Gramene: Os06t0728000-01, Os06t0728000-02
- KEGG: osa:4342129
- Orthologous matrix: PLSAYMH
- InterPro: IPR009071, IPR031061, IPR036910
- PANTHER: PTHR46261, PTHR46261:SF18
- SUPFAM: SSF47095
- PROSITE: PS50118
- Gene3D: 1.10.30.10
- OrthoDB: Q5Z7N3
- SWISS-MODEL: Q5Z7N3
- Conserved Domain Database: cd22005
- eggNOG: KOG0381
Homologs
- Citrus sinensis: orange1.1g030283m, orange1.1g032101m, orange1.1g034117m
- Juglans regia: Jr01_00550
- Manihot esculenta: Manes.08G091800.2.p, Manes.08G091800.1.p, MANES_15G176600, MANES_15G172400
- Medicago truncatula: Medtr1g022345
- Rosa chinensis: RchiOBHm_Chr2g0169081
- Sesamum indicum: SIN_1015811, SIN_1006600
- Solanum tuberosum: PGSC0003DMP400014922
Sequences
cDNA Sequence
- >LOC_Os06g51220.2
TTCTTATCCCTTGTCCTCGCAACCCCGCTTCCTTCTCTCCTCTCCTCTTCTCTTCTCTTCTCTGGTGGTGTGGGTGTGTCCCTGTCTCCCCTCTCCTTCCTCCTCTCCTTTCCCCTCCTCTCTTCCCCCCTCTCACAAGAGAGAGAGCGCCAGACTCTCCCCAGGTGAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCATCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAATTCCGTCGTTTTCTTCTTCCTTGCACTTAGCTTGTGATAAAATTGCTTTGCGGTAGGTAGGTACTCCGCTAGCTAATTGTGGTCGATCGATTGCTTGTTTGATTGCGGATCACACTAGCCAGTGTTGATTTTAAGATTTGTTTTTCTTGA - >LOC_Os06g51220.3
TTCTTATCCCTTGTCCTCGCAACCCCGCTTCCTTCTCTCCTCTCCTCTTCTCTTCTCTTCTCTGGTGGTGTGGGTGTGTCCCTGTCTCCCCTCTCCTTCCTCCTCTCCTTTCCCCTCCTCTCTTCCCCCCTCTCACAAGAGAGAGAGCGCCAGACTCTCCCCAGGTGAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCATCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAATTCCGTCGTTTTCTTCTTCCTTGCACTTAGCTTGTGATAAAATTGCTTTGCGGTAGGTAGGTACTCCGCTAGCTAATTGTGGTCGATCGATTGCTTGTTTGATTGCGGATCACACTAGCCAGTGTTGATTTTAAGATTTGTTTTTCTTGA - >LOC_Os06g51220.4
TTCTTATCCCTTGTCCTCGCAACCCCGCTTCCTTCTCTCCTCTCCTCTTCTCTTCTCTTCTCTGGTGGTGTGGGTGTGTCCCTGTCTCCCCTCTCCTTCCTCCTCTCCTTTCCCCTCCTCTCTTCCCCCCTCTCACAAGAGAGAGAGCGCCAGACTCTCCCCAGGTGAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGAGCCTTCCAGTGGACAAGATGGGAGCAGCAAGACGCTAAGGGCGGCGGGCGTCCTAAGGAGCCTATCCATCATCATCATCGTCTACTAGAATTATTCAGTTTCACTTCACATCGTGATGTTTTACTTTTTCTCTCGTCCTATAACGGATAGCGCTCCTTGTTGGCGCCACTGGTGGGTGTTGTGGTGCAGCCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAATTCCGTCGTTTTCTTCTTCCTTGCACTTAGCTTGTGATAAAATTGCTTTGCGGTAGGTAGGTACTCCGCTAGCTAATTGTGGTCGATCGATTGCTTGTTTGATTGCGGATCACACTAGCCAGTGTTGATTTTAAGATTTGTTTTTCTTGA
CDS Sequence
- >LOC_Os06g51220.2
ATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGA - >LOC_Os06g51220.3
ATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGA - >LOC_Os06g51220.4
ATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCTTTCTTCGTTTTTATGGAGGAGTTCCGTAAGGAGTTCAAGGAGAAGAACCCCAAGAATAAATCTGTCGCTGCTGTAGGAAAAGCAGCCGGTGATAGGTGGAAATCCCTGACCGAAGCGGACAAGGCTCCCTATGTAGCCAAGGCCAACAAGCTCAAGGCCGAGTACAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCCAAGAAGGCACCCGCCAAGGAGGAAGAGGAGGACGACGAGGAGGAATCTGACAAGTCCAAGTCCGAGGTCAATGATGAGGATGACGACGAGGGCAGCGAAGAGGATGAAGACGATGACGAGTGA
Protein Sequence
- >LOC_Os06g51220.2
MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE* - >LOC_Os06g51220.3
MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE* - >LOC_Os06g51220.4
MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDEDDDE*