Gene Details:
- MSU gene ID: LOC_Os06g49740
- RAPdb gene ID: Os06g0711600
- Gene Symbol: OsSYF2
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.
- The phenotypes of transgenic lines indicated that OsSYF2 positively regulates grain length via its influence on cell expansion.
- Transcriptomic analysis showed that OsSYF2 controls the expression and pre-mRNA alternative splicing of genes involved in sugar metabolism.
Function-related keywords:
- grain , grain-length , sugar
Literature:
- A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing . DOI: 10.1186/s12284-020-00425-0 ; PMID: 32910367
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g49740.1
AATCCCCAATTCGCACGCGGAGCTAATCCTCTTCTAGGGTTCCGACGAATCCCGAGCTCGGAGGCCGATGGCGTCGTCGTCGTCGGCGGCGTCGGGGAAGTCGCGGCCGGAGTGCATCAACTCGTCGAACCCGTTCCACGAGTGCTCCGACTACTGCCTCCGCAAGATCGCCGAGGCCAAGGAGCGCATCGAGGACGAGCAGCGGCCGCCGGTGGACCGCACCGTCCACCCCGACTGCATCAACGCCTCCAACCCCTACCACGTCTGCTCCGAGTACTGCTTCAAGAGGATCGCCGACGCCAAATCAGGGTTGGAGCGTGCGGAGCAAGAACCGCCTTCTGCAGACGCTGGCAAATCCGACGCTGCCCAAGCTGAGGGTGGTGGTGGTGATGATGATGCGGAGCAGGAGGACGCCGGCTCAGACGACGGTTACCCGCAGATGACAGAGAAGCAGAAGAAGCTATTTGAGTTGCGGCTGAAGATGAATGAAGCTAGGAAGGCAAATCAGCAAGCGATGGTGGCAGAGAAGAAGAGGATGGAGCCTCGCGCTGAGAGTAGAGGTGTTTCTAAACAAAAGTGGCTGGAAGACAGAAAAAAGAAGATCGGAAAGCTTCTTGACTCAAATGGCCTGGACATGACAAAGTCTTACATGCTCGATACACAGGAGTCGGCCGAAGCAAAATACAAGAAGTGGGAAAAGGAACCTGCACCATATGGTTGGGATGTTTTCAACCAGAAGACCTTATATGATGCATACAAAAAGAGGACCAAGAACATTGAGGTTGACATGGAGGCATACAACAAAGCAAAGGAAGCCGATCCTGAATTTTATCGGGACGCTTCAAGTCTCCAATATGGGAAGGTGTCTAAGGTCCCGGAAGAAAACATAGACAGGATGGTTAATGAGCTTAAGGAACGGGATGAGAAACGGAAAGCATTCAGCAGGAGGCGCAAGTTCCATGAAGACAAGGACATTGACTCGATCAATGACCGGAACGAACACTTCAACAAGAAGGTTGAGAGGGCATTTGGCAAGTATACTCTTGAGATCAAGAACAATCTTGAAAGGGGGACTGCCTTGCCAGATTAGAAACTCTGCACACTCTGCTGGTAGAGAGTGGACATGTTGTCTGTTTCCCCAGCTGTCTTTTGCTTGTAAGTTGTAACCTATCAACAATTTGCTTGGAAACTGTAACTGTAAGAAAGCCAACTCGGATGTAATGTCGTGAGAATATAGCATATTCGAGAAGTTGTGTATCCAAAATGAGCGGAATCATTAACTATAGTGATTTTGCAATGTATCCAAATGAGCATAATCATTAACTGTAGTGGTGTGCTGGTGCCCCAAATGTCTTGCAAT - >LOC_Os06g49740.2
AATCCCCAATTCGCACGCGGAGCTAATCCTCTTCTAGGGTTCCGACGAATCCCGAGCTCGGAGGCCGATGGCGTCGTCGTCGTCGGCGGCGTCGGGGAAGTCGCGGCCGGAGTGCATCAACTCGTCGAACCCGTTCCACGAGTGCTCCGACTACTGCCTCCGCAAGATCGCCGAGGCCAAGGAGCGCATCGAGGACGAGCAGCGGCCGCCGGTGGACCGCACCGTCCACCCCGACTGCATCAACGCCTCCAACCCCTACCACGTCTGCTCCGAGTACTGCTTCAAGAGGATCGCCGACGCCAAATCAGGGTTGGAGCGTGCGGAGCAAGAACCGCCTTCTGCAGACGCTGGCAAATCCGACGCTGCCCAAGCTGAGGGTGGTGGTGGTGATGATGATGCGGAGCAGGAGGACGCCGGCTCAGACGACGGTTACCCGCAGATGACAGAGAAGCAGAAGAAGCTATTTGAGTTGCGGCTGAAGATGAATGAAGCTAGGAAGGCAAATCAGCAAGCGATGGTGGCAGAGAAGAAGAGGATGGAGCCTCGCGCTGAGAGTAGAGGTGTTTCTAAACAAAAGTGGCTGGAAGACAGAAAAAAGAAGATCGGAAAGCTTCTTGACTCAAATGGCCTGGACATGACAAAGTCTTACATGCTCGATACACAGGAGTCGGCCGAAGCAAAATACAAGAAGTGGGAAAAGGAACCTGCACCATATGGTTGGGATGTTTTCAACCAGAAGACCTTATATGATGCATACAAAAAGAGGACCAAGAACATTGAGGTTGACATGGAGGCATACAACAAAGCAAAGGAAGCCGATCCTGAATTTTATCGGGACGCTTCAAGTCTCCAATATGGGAAGGTGTCTAAGGTCCCGGAAGAAAACATAGACAGGATGGTTAATGAGCTTAAGGAACGGGATGAGAAACGGAAAGCATTCAGCAGGAGGCGCAAGTTCCATGAAGACAAGGACATTGACTCGATCAATGACCGGAACGAACACTTCAACAAGAAGGTTGAGAGGGCATTTGGCAAGTATACTCTTGAGATCAAGAACAATCTTGAAAGGGGGACTGCCTTGCCAGATTAGAAACTCTGCACACTCTGCTGGTAGAGAGTGGACATGTTGTCTGTTTCCCCAGCTGTCTTTTGCTTGTAAGTTGTAACCTATCAACAATTTGCTTGGAAACTGTAACTGTAAGAAAGCCAACTCGGATGTAATGTCGTGAGAATATAGCATATTCGAGAAGTTGTGTATCCAAAATGAGCGGAATCATTAACTATAGTGATTTTGCAATGTATCCAAATGAGCATAATCATTAACTGTAGTGGTGTGCTGGTGCCCCAAATGTCTTGCAAT
CDS Sequence
- >LOC_Os06g49740.1
ATGGCGTCGTCGTCGTCGGCGGCGTCGGGGAAGTCGCGGCCGGAGTGCATCAACTCGTCGAACCCGTTCCACGAGTGCTCCGACTACTGCCTCCGCAAGATCGCCGAGGCCAAGGAGCGCATCGAGGACGAGCAGCGGCCGCCGGTGGACCGCACCGTCCACCCCGACTGCATCAACGCCTCCAACCCCTACCACGTCTGCTCCGAGTACTGCTTCAAGAGGATCGCCGACGCCAAATCAGGGTTGGAGCGTGCGGAGCAAGAACCGCCTTCTGCAGACGCTGGCAAATCCGACGCTGCCCAAGCTGAGGGTGGTGGTGGTGATGATGATGCGGAGCAGGAGGACGCCGGCTCAGACGACGGTTACCCGCAGATGACAGAGAAGCAGAAGAAGCTATTTGAGTTGCGGCTGAAGATGAATGAAGCTAGGAAGGCAAATCAGCAAGCGATGGTGGCAGAGAAGAAGAGGATGGAGCCTCGCGCTGAGAGTAGAGGTGTTTCTAAACAAAAGTGGCTGGAAGACAGAAAAAAGAAGATCGGAAAGCTTCTTGACTCAAATGGCCTGGACATGACAAAGTCTTACATGCTCGATACACAGGAGTCGGCCGAAGCAAAATACAAGAAGTGGGAAAAGGAACCTGCACCATATGGTTGGGATGTTTTCAACCAGAAGACCTTATATGATGCATACAAAAAGAGGACCAAGAACATTGAGGTTGACATGGAGGCATACAACAAAGCAAAGGAAGCCGATCCTGAATTTTATCGGGACGCTTCAAGTCTCCAATATGGGAAGGTGTCTAAGGTCCCGGAAGAAAACATAGACAGGATGGTTAATGAGCTTAAGGAACGGGATGAGAAACGGAAAGCATTCAGCAGGAGGCGCAAGTTCCATGAAGACAAGGACATTGACTCGATCAATGACCGGAACGAACACTTCAACAAGAAGGTTGAGAGGGCATTTGGCAAGTATACTCTTGAGATCAAGAACAATCTTGAAAGGGGGACTGCCTTGCCAGATTAG - >LOC_Os06g49740.2
ATGGCGTCGTCGTCGTCGGCGGCGTCGGGGAAGTCGCGGCCGGAGTGCATCAACTCGTCGAACCCGTTCCACGAGTGCTCCGACTACTGCCTCCGCAAGATCGCCGAGGCCAAGGAGCGCATCGAGGACGAGCAGCGGCCGCCGGTGGACCGCACCGTCCACCCCGACTGCATCAACGCCTCCAACCCCTACCACGTCTGCTCCGAGTACTGCTTCAAGAGGATCGCCGACGCCAAATCAGGGTTGGAGCGTGCGGAGCAAGAACCGCCTTCTGCAGACGCTGGCAAATCCGACGCTGCCCAAGCTGAGGGTGGTGGTGGTGATGATGATGCGGAGCAGGAGGACGCCGGCTCAGACGACGGTTACCCGCAGATGACAGAGAAGCAGAAGAAGCTATTTGAGTTGCGGCTGAAGATGAATGAAGCTAGGAAGGCAAATCAGCAAGCGATGGTGGCAGAGAAGAAGAGGATGGAGCCTCGCGCTGAGAGTAGAGGTGTTTCTAAACAAAAGTGGCTGGAAGACAGAAAAAAGAAGATCGGAAAGCTTCTTGACTCAAATGGCCTGGACATGACAAAGTCTTACATGCTCGATACACAGGAGTCGGCCGAAGCAAAATACAAGAAGTGGGAAAAGGAACCTGCACCATATGGTTGGGATGTTTTCAACCAGAAGACCTTATATGATGCATACAAAAAGAGGACCAAGAACATTGAGGTTGACATGGAGGCATACAACAAAGCAAAGGAAGCCGATCCTGAATTTTATCGGGACGCTTCAAGTCTCCAATATGGGAAGGTGTCTAAGGTCCCGGAAGAAAACATAGACAGGATGGTTAATGAGCTTAAGGAACGGGATGAGAAACGGAAAGCATTCAGCAGGAGGCGCAAGTTCCATGAAGACAAGGACATTGACTCGATCAATGACCGGAACGAACACTTCAACAAGAAGGTTGAGAGGGCATTTGGCAAGTATACTCTTGAGATCAAGAACAATCTTGAAAGGGGGACTGCCTTGCCAGATTAG
Protein Sequence
- >LOC_Os06g49740.1
MASSSSAASGKSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSEYCFKRIADAKSGLERAEQEPPSADAGKSDAAQAEGGGGDDDAEQEDAGSDDGYPQMTEKQKKLFELRLKMNEARKANQQAMVAEKKRMEPRAESRGVSKQKWLEDRKKKIGKLLDSNGLDMTKSYMLDTQESAEAKYKKWEKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSKVPEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSINDRNEHFNKKVERAFGKYTLEIKNNLERGTALPD* - >LOC_Os06g49740.2
MASSSSAASGKSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSEYCFKRIADAKSGLERAEQEPPSADAGKSDAAQAEGGGGDDDAEQEDAGSDDGYPQMTEKQKKLFELRLKMNEARKANQQAMVAEKKRMEPRAESRGVSKQKWLEDRKKKIGKLLDSNGLDMTKSYMLDTQESAEAKYKKWEKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSKVPEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSINDRNEHFNKKVERAFGKYTLEIKNNLERGTALPD*