Information report for OsSLC1
Gene Details
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Functional Descriptions
- OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
- Loss-of-function of OsSLC1 affected the intron splicing of multiple group II introns, and especially precluded the intron splicing of rps16, and resulted in significant increase in the transcript levels of 3 chloroplast ribosomal RNAs and 16 chloroplast development-related and photosynthesis-related genes, and in significant reduction in the transcript levels of 1 chloroplast ribosomal RNAs and 2 chloroplast development-related and photosynthesis-related genes.
- Map-based cloning of OsSLC1 revealed that a single base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant, which caused a premature stop codon.
- OsSLC1 was preferentially expressed in green leaves, and encoded a chloroplast-localized PPR protein harboring 12 PPR motifs.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q5Z9G2
- EMBL: AK063542, AP014962
- AlphaFoldDB: Q5Z9G2
- EnsemblPlants: Os06t0710800-01
- Gramene: Os06t0710800-01
- KEGG: osa:9268482
- Orthologous matrix: FTMMQDQ
- InterPro: IPR002885, IPR011990
- PANTHER: PTHR47447, PTHR47447:SF24
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- OrthoDB: Q5Z9G2
- SWISS-MODEL: Q5Z9G2
- eggNOG: KOG4197
Homologs
- Arabidopsis thaliana: AT3G22470, AT5G21222
- Brassica oleracea: Bo9g149950
- Brassica rapa: Brara.J01512
- Daucus carota: DCAR_016546
- Lotus japonicus: Lj3g0013909
- Malus domestica: MDP0000250177
Sequences
cDNA Sequence
- >LOC_Os06g49670.1
ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATAAGGTTCTCATA - >LOC_Os06g49670.2
ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATAAGGTTCTCATA
CDS Sequence
- >LOC_Os06g49670.1
ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAG - >LOC_Os06g49670.2
ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAG
Protein Sequence
- >LOC_Os06g49670.1
MDAYYLVRLHLPPPLQLPPTLPLPRGRHDRRVGGAVACRATAGPVGSQERPWESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKVSEVYKEMEGAGCTPDRKAREMLNDASIVLEQRGMLHL* - >LOC_Os06g49670.2
MDAYYLVRLHLPPPLQLPPTLPLPRGRHDRRVGGAVACRATAGPVGSQERPWESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKVSEVYKEMEGAGCTPDRKAREMLNDASIVLEQRGMLHL*