Gene Details:

Functional Descriptions:

  • OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.
  • Loss-of-function of OsSLC1 affected the intron splicing of multiple group II introns, and especially precluded the intron splicing of rps16, and resulted in significant increase in the transcript levels of 3 chloroplast ribosomal RNAs and 16 chloroplast development-related and photosynthesis-related genes, and in significant reduction in the transcript levels of 1 chloroplast ribosomal RNAs and 2 chloroplast development-related and photosynthesis-related genes.
  • Map-based cloning of OsSLC1 revealed that a single base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant, which caused a premature stop codon.
  • OsSLC1 was preferentially expressed in green leaves, and encoded a chloroplast-localized PPR protein harboring 12 PPR motifs.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os06g49670.1
    ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATAAGGTTCTCATA
  • >LOC_Os06g49670.2
    ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATAAGGTTCTCATA
CDS Sequence
  • >LOC_Os06g49670.1
    ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAG
  • >LOC_Os06g49670.2
    ATGGATGCATACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAG
Protein Sequence
  • >LOC_Os06g49670.1
    MDAYYLVRLHLPPPLQLPPTLPLPRGRHDRRVGGAVACRATAGPVGSQERPWESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKVSEVYKEMEGAGCTPDRKAREMLNDASIVLEQRGMLHL*
  • >LOC_Os06g49670.2
    MDAYYLVRLHLPPPLQLPPTLPLPRGRHDRRVGGAVACRATAGPVGSQERPWESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARLIRALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKVSEVYKEMEGAGCTPDRKAREMLNDASIVLEQRGMLHL*