Gene Details:
- MSU gene ID: LOC_Os06g46350
- RAPdb gene ID: Os06g0677000
- Gene Symbol: DEP3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In the current study, we characterized a novel dense and erect panicle (EP) mutant, DEP3, derived from the Oryza sativa ssp.
- The panicle of the DEP3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering.
- Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.).
- Anatomical observations revealed that the DEP3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype.
- Taken together, our results indicated that the patatin-like PLA2 might play a significant role in the formation of vascular bundles, and that the DEP3 mutant may provide another EP resource for rice breeding programs.
- The DEP3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle.
- Overexpression of OrMKK3 influenced the expression levels of the grain size-related genes SMG1, GW8, GL3, GW2, and DEP3.
Function-related keywords:
- erect , vascular-bundle , yield , grain-yield , grain , flower , grain-number , panicle , breeding , culm , grain-size
Literature:
- Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.) . DOI: 10.1007/s00122-011-1543-6 ; PMID: 21318372
- OrMKK3 Influences Morphology and Grain Size in Rice . DOI: 10.1007/s12374-020-09290-2 ; PMID: 33424241
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g46350.1
GACCAAGCCGGAGCACCCACCTCAGCTTCTCAGCTTCAGCTTCGCTTCGCTACAGAAAAGCATCTCGGAAAAGCCAAGAACCAAACGGCTCAGCTCTACGTCGCGTTTGCTAATGGCGACAACCTCCTCGCTCGCGCTGCCGCTGTTCGCCGGCGGCGGCGGCTCCGACCGCCTCAGCCAGGAGATCTTCTCCATCCTCGAGTCCAACTTCCTCTTCGGCGCGCCGCCGCCGGAGGGGCCTGCAGGTTACTACTCCTCCGTTGGCCGCGTCCGCGTGCTCTCGATTGATGGCGGCGCCGACGGCGGCGCGCTCGCCGCGGCCGCGCTGGTCCGCCTCGAGCGCCGGCTTAAGGAGCTCTCCGGGAACCCCGATGCCCGCGTCGCCGACTACTTTGACCTGGCGGCCGGCTCCGGCGCCGGCGGGTTCCTCGCCGCCGCGTTGTTCGCATGCCGGATGCCGGCGGAGGCGGCGCGCGACGTCGTTGCCAGGAACCGGAAGGTGTTCTCCGGCCGCCGTGGGCGGGGGGGTGGCCTGTTCTGGAGGCCGGAGTCGGTGTTCAAGAAGGTGTTCGGCGACCTGACGGTGAGGGACGCCGCCAAGCCGCTGCTGATACCCTGCTACGACATGGCGACGGCGGCGCCGTTCGTCTTCTCCCGCGCCGACGCCGTCGAGGCCGACGCGTTCGACTTCCCGCTGTGGCAGGTCTGCGCCGCGGCGTGCGGCGTGGGCCCCGCCGAGGTCGCCTCCCTCGACGGCCGGACCAGGCTCCGCGCCGCGGCGGCCACGGGCGGCGGCGGCGCCGTGTCCAACCCGGCCGCGGTGGCCGTCACCCACGTGCTCCACAACAAGCGCGAGTTCCCCTTCGCCGCCGGCGCCGGCGACCTCGTCGTGCTGTCCCTCGGCGGGAACAACGCCGCCGCCGGCCCCCGCGCGTCGTCGTCGAGCCTCCTGCGCATCGCCGGAGCTTGCCAGGCCGACATGGTGGACCAAGCTGTATCAATGGCGTTCGGCGAGTGCAGGGCAACCAACTACATCCGTATCCAGGGCAATGGCATTGTGGCCGGAGCGGCGGCGGCGACGGCGGAGGCGGCGATGACGGAGAGGAGCGTGGAGTCGGTGCTGTTCAGGGGGAAGAAGGTGATGGCGCAGACGAACGGCGAGCGGCTGGACGGCGTGGCGGAGCAGCTGGTGAGGGAGCACCACCGGAGGATGGAGAGCAAGGCGCCGGTGGTGCTCATCAAGCCGTCGGCGACGCCGCGGACGTCGTCGTCGTCGGCGTCCACGCTCATCACCGTCTCCACCAACGCCTCGTCCGAGTCGCCATGA
CDS Sequence
- >LOC_Os06g46350.1
ATGGCGACAACCTCCTCGCTCGCGCTGCCGCTGTTCGCCGGCGGCGGCGGCTCCGACCGCCTCAGCCAGGAGATCTTCTCCATCCTCGAGTCCAACTTCCTCTTCGGCGCGCCGCCGCCGGAGGGGCCTGCAGGTTACTACTCCTCCGTTGGCCGCGTCCGCGTGCTCTCGATTGATGGCGGCGCCGACGGCGGCGCGCTCGCCGCGGCCGCGCTGGTCCGCCTCGAGCGCCGGCTTAAGGAGCTCTCCGGGAACCCCGATGCCCGCGTCGCCGACTACTTTGACCTGGCGGCCGGCTCCGGCGCCGGCGGGTTCCTCGCCGCCGCGTTGTTCGCATGCCGGATGCCGGCGGAGGCGGCGCGCGACGTCGTTGCCAGGAACCGGAAGGTGTTCTCCGGCCGCCGTGGGCGGGGGGGTGGCCTGTTCTGGAGGCCGGAGTCGGTGTTCAAGAAGGTGTTCGGCGACCTGACGGTGAGGGACGCCGCCAAGCCGCTGCTGATACCCTGCTACGACATGGCGACGGCGGCGCCGTTCGTCTTCTCCCGCGCCGACGCCGTCGAGGCCGACGCGTTCGACTTCCCGCTGTGGCAGGTCTGCGCCGCGGCGTGCGGCGTGGGCCCCGCCGAGGTCGCCTCCCTCGACGGCCGGACCAGGCTCCGCGCCGCGGCGGCCACGGGCGGCGGCGGCGCCGTGTCCAACCCGGCCGCGGTGGCCGTCACCCACGTGCTCCACAACAAGCGCGAGTTCCCCTTCGCCGCCGGCGCCGGCGACCTCGTCGTGCTGTCCCTCGGCGGGAACAACGCCGCCGCCGGCCCCCGCGCGTCGTCGTCGAGCCTCCTGCGCATCGCCGGAGCTTGCCAGGCCGACATGGTGGACCAAGCTGTATCAATGGCGTTCGGCGAGTGCAGGGCAACCAACTACATCCGTATCCAGGGCAATGGCATTGTGGCCGGAGCGGCGGCGGCGACGGCGGAGGCGGCGATGACGGAGAGGAGCGTGGAGTCGGTGCTGTTCAGGGGGAAGAAGGTGATGGCGCAGACGAACGGCGAGCGGCTGGACGGCGTGGCGGAGCAGCTGGTGAGGGAGCACCACCGGAGGATGGAGAGCAAGGCGCCGGTGGTGCTCATCAAGCCGTCGGCGACGCCGCGGACGTCGTCGTCGTCGGCGTCCACGCTCATCACCGTCTCCACCAACGCCTCGTCCGAGTCGCCATGA
Protein Sequence
- >LOC_Os06g46350.1
MATTSSLALPLFAGGGGSDRLSQEIFSILESNFLFGAPPPEGPAGYYSSVGRVRVLSIDGGADGGALAAAALVRLERRLKELSGNPDARVADYFDLAAGSGAGGFLAAALFACRMPAEAARDVVARNRKVFSGRRGRGGGLFWRPESVFKKVFGDLTVRDAAKPLLIPCYDMATAAPFVFSRADAVEADAFDFPLWQVCAAACGVGPAEVASLDGRTRLRAAAATGGGGAVSNPAAVAVTHVLHNKREFPFAAGAGDLVVLSLGGNNAAAGPRASSSSLLRIAGACQADMVDQAVSMAFGECRATNYIRIQGNGIVAGAAAATAEAAMTERSVESVLFRGKKVMAQTNGERLDGVAEQLVREHHRRMESKAPVVLIKPSATPRTSSSSASTLITVSTNASSESP*