Information report for OsARID3
Gene Details
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Functional Descriptions
- Disruption of OsARID3 leads to defective SAM, early seedling lethality, and impaired capacity of in vitro shoot regeneration.
- We conclude that OsARID3 is an AT-rich specific DNA-binding protein and that it plays a major role in SAM development in rice.
- We show that the expression levels of several KNOXI genes and the biosynthetic genes for auxin and cytokinin are significantly altered in the OsARID3 mutant calli.
- Moreover, we determine that auxin concentrations are increased whereas cytokinin levels are decreased in OsARID3 calli.
- Furthermore, our chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7.
- Disruption of OsARID3 leads to a defective SAM, early seedling lethality, and impaired capacity of in<U+00A0>vitro shoot regeneration.
- Moreover, we determine that auxin concentrations are increased, whereas cytokinin levels are decreased, in OsARID3 calli.
- Furthermore, chromatin immunoprecipitation results demonstrate that OsARID3 binds directly to the KNOXI gene OSH71, the auxin biosynthetic genes OsYUC1 and OsYUC6, and the cytokinin biosynthetic genes OsIPT2 and OsIPT7.
Functional Keywords
- shoot , seedling , development , auxin , cytokinin
Literature and News
- OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice . DOI: 10.1111/tpj.12927 ; PMID: 26121094
- OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice . DOI: 10.1111/tpj.12927 ; PMID: 26121094
Gene Resources
- UniProt: Q69XV5
- EMBL: AK073058, AK099075, AP014962
- AlphaFoldDB: Q69XV5
- EnsemblPlants: Os06t0622300-01
- Gramene: Os06t0622300-01
- KEGG: osa:4341551
- Orthologous matrix: SQVGIHA
- InterPro: IPR001606, IPR002068, IPR008978
- PANTHER: PTHR15348, PTHR15348:SF0
- SUPFAM: SSF46774, SSF49764
- PROSITE: PS01031, PS51011
- Gene3D: 1.10.150.60, 2.60.40.790
- OrthoDB: Q69XV5
- SWISS-MODEL: Q69XV5
- Conserved Domain Database: cd00298, cd16100
- eggNOG: KOG2744
Sequences
cDNA Sequence
- >LOC_Os06g41730.1
TCAGTTCAAAGCGTTCCCCCTGTTCATTTCGACCTCTCTCTTCCTCTCCCGTCGTCGTCTCCCCCGTCTCCGGCTAGGGTTTCGGCCGCTCGCCGCCCTCGCCTCCGCCTCCGCCTCCGCCGCCGCCGCTCGCCAGGGGGAGCCCTTCTCACCTCACCGCTCCCGTCTCTCTCTCCCCGTCGACCCCGACGGGCTACGGCTCTACACCCTCCCCGCCTCGGCTCGTGTCTGTTCGCCCGCGGGGACGCTGTTTCCGGCGGGCGGAGGCGCGGCCGCGGCGTCGCGGCTCCTCCTCGGAGGCACGGTGCGGGCGACGGCCCTCCTCCTCTCCTTCCCCGACCCTCTCTCTCTATCTCACTCTCTCTGCCCTAGCCTTCTACGCTGTGTGGAGGCGTCGTCGCGCGCGCGCGCCCGGACGGCGAGCATCTGGATTTGAGCCTAATTGAAGCTGAACCCCCATGGCCCAGTTTAGGTCTGCGCCTGTGGAAAGCGAGGCGGAGCCAGGCGCCGATGGCCCTGTGGATGAAGCCAATGCTGTGGAAGAGGAGAAATCTGGTAAGGGTGAGGATGGCATTGAGGAGGCTGCCGATACCGTTGATTCCGTGAAGGATTCAGCAAAGCCTGAAGGCATGGATGCAAAGGAGGAGGCGGTGGAGCAGGAGGGTGGGGCCGCAGCGGATAAGGCAAAGGATATTCCTGTGACTAGTAACGGTAAGACGGATGCTGGCGGAAATGAGGTGGCTGAAATGAAGGTTGAAAAATTGGAGAATGGTGATGGGCATTTGAAGGCGGACGGCGATAGCAATGGTGATAACAAGGGTGCTGATGGTGAGAAACAGCTTATGTTAGCGTCAGCTGGGGAGGACGTGGAGGACCCGGTGCTGTCCAAGCTTGCAAGCAACTCCTTCATGTTTGATTACAGCTGTGGTGGTGATGACTCGGGGACTGAGGAGGAGCAGGCTGCTTTCATGAAGGAACTTGAGCGGTTTTACAGGGAGAAGCTTATGGAATTCAAGCCCCCGAAGTTCTATGGTGAAGGGTTGAATTGCCTCAAGTTGTGGAGACAAGTGACTGGGTTGGGTGGCTATGATCAGGTGACATCGTGCAAACTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACAACTGTTTCATGGACCTTCCGTAACTTCTATGAGAAGGCACTCCTTGAATATGAGAAACACAAAATCGAAACGGGCGAGTTTCAAGTTGCTGCATCTAATTTAACAGAGAGGATTACTTCTGAAAGTCAGGTTGGCATCCATGCTTCTGGTTCTGGAAGAGCTAGAAGAGAATCTGCAACCCGAGCTATGCAAGGCTGGCACTCTCAGCGCTTGCTTGGCAATGGTGAAATTGCTGATCCAATAATTAAAGATAAAGGGACGGTGTCTGTCTTAAAAAAGGATAAAACTCCTAAAAGCAGCGGTTCTGCCAAGAGGAAAAGGACACCGACCTTGGAAGATGACAGGATTGTACCATATAAACCTGACAAGCTACAAAATGACTCAATGGTTCTTGACCTTGGCCCTCCAGCTGATTGGGTAAAGATAAACGTTCGGAGAACCAAAGATTGCTATGAAGTCTATGCATTGGTTCCTGGCCTTCTGCGTGAGGAGGTACATGTTCAGTCAGATCCTGCTGGCCGTTTGATAGTTACTGGAGAGCCTGAGCAACTAGACAATCCTTGGGGTGTTACTCCATTCAAGAAGGTTATTAGTTTGCCCTCCCGCATTGATCCTCATCAAACTTCGGCAGTTGTCACTCTCCATGGACAGCTATTTGTCCGTGCACCATTCGAGCAGTCAAAGTAAATGGTGCTCTACAAGATGAAGCGCAACATGCAAGGTTGCTTTTGTAGGTGGGGGTTTATGTGATTGACTTGGGCCTGTTCATCCTGATCTTCGTTGCAAACTAGTTACTTTCTGCTTCATTACTCCTGCCATGTTGTCTATTCTGTATTGATTAATTCTAGTTAACTAGATGGTCTAGTTATGTATCTTGTAGTTCGTTAATTGTGATATGTAGCTTAAGTTCAGCTCTATTAGTTTAGAATGTTAATAGCCTGATGCTAAACATGTTCATGGTTTCTTTCTTCCTTTTTTTTTTCTCAACTAAAGAAAAGGTGATAATTTGTAGCATGTAGCTTGTGAGGTTATTCCTAATACTCAGTTCTCATACTACTCAGAACATGAAGACAAGATAGATTCTTGGATGTAACTGTTGCCTTGTGCATTGCTGTTGTATCTGTATAACTGAATTGACAACTGTGCCTGACCATCCCTTGAAACTATTACTGATGGTGTATCAATTGTTTTTAGTGTTATCTTG - >LOC_Os06g41730.2
TCAGTTCAAAGCGTTCCCCCTGTTCATTTCGACCTCTCTCTTCCTCTCCCGTCGTCGTCTCCCCCGTCTCCGGCTAGGGTTTCGGCCGCTCGCCGCCCTCGCCTCCGCCTCCGCCTCCGCCGCCGCCGCTCGCCAGGGGGAGCCCTTCTCACCTCACCGCTCCCGTCTCTCTCTCCCCGTCGACCCCGACGGGCTACGGCTCTACACCCTCCCCGCCTCGGCTCGTGTCTGTTCGCCCGCGGGGACGCTGTTTCCGGCGGGCGGAGGCGCGGCCGCGGCGTCGCGGCTCCTCCTCGGAGGCACGGTGCGGGCGACGGCCCTCCTCCTCTCCTTCCCCGACCCTCTCTCTCTATCTCACTCTCTCTGCCCTAGCCTTCTACGCTGTGTGGAGGCGTCGTCGCGCGCGCGCGCCCGGACGGCGAGCATCTGGATTTGAGCCTAATTGAAGCTGAACCCCCATGGCCCAGTTTAGGTCTGCGCCTGTGGAAAGCGAGGCGGAGCCAGGCGCCGATGGCCCTGTGGATGAAGCCAATGCTGTGGAAGAGGAGAAATCTGGTAAGGGTGAGGATGGCATTGAGGAGGCTGCCGATACCGTTGATTCCGTGAAGGATTCAGCAAAGCCTGAAGGCATGGATGCAAAGGAGGAGGCGGTGGAGCAGGAGGGTGGGGCCGCAGCGGATAAGGCAAAGGATATTCCTGTGACTAGTAACGGTAAGACGGATGCTGGCGGAAATGAGGTGGCTGAAATGAAGGTTGAAAAATTGGAGAATGGTGATGGGCATTTGAAGGCGGACGGCGATAGCAATGGTGATAACAAGGGTGCTGATGGTGAGAAACAGCTTATGTTAGCGTCAGCTGGGGAGGACGTGGAGGACCCGGTGCTGTCCAAGCTTGCAAGCAACTCCTTCATGTTTGATTACAGCTGTGGTGGTGATGACTCGGGGACTGAGGAGGAGCAGGCTGCTTTCATGAAGGAACTTGAGCGGTTTTACAGGGAGAAGCTTATGGAATTCAAGCCCCCGAAGTTCTATGGTGAAGGGTTGAATTGCCTCAAGTTGTGGAGACAAGTGACTGGGTTGGGTGGCTATGATCAGGTGACATCGTGCAAACTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACAACTGTTTCATGGACCTTCCGTAACTTCTATGAGAAGGCACTCCTTGAATATGAGAAACACAAAATCGAAACGGGCGAGTTTCAAGTTGCTGCATCTAATTTAACAGAGAGGATTACTTCTGAAAGTCAGGTTGGCATCCATGCTTCTGGTTCTGGAAGAGCTAGAAGAGAATCTGCAACCCGAGCTATGCAAGGCTGGCACTCTCAGCGCTTGCTTGGCAATGGTGAAATTGCTGATCCAATAATTAAAGATAAAGGGACGGTGTCTGTCTTAAAAAAGGATAAAACTCCTAAAAGCAGCGGTTCTGCCAAGAGGAAAAGGACACCGACCTTGGAAGATGACAGGATTGTACCATATAAACCTGACAAGCTACAAAATGACTCAATGGTTCTTGACCTTGGCCCTCCAGCTGATTGGGTAAAGATAAACGTTCGGAGAACCAAAGATTGCTATGAAGTCTATGCATTGGTTCCTGGCCTTCTGCGTGAGGAGGTACATGTTCAGTCAGATCCTGCTGGCCGTTTGATAGTTACTGGAGAGCCTGAGCAACTAGACAATCCTTGGGGTGTTACTCCATTCAAGAAGGTTATTAGTTTGCCCTCCCGCATTGATCCTCATCAAACTTCGGCAGTTGTCACTCTCCATGGACAGCTATTTGTCCGTGCACCATTCGAGCAGTCAAAGTAAATGGTGCTCTACAAGATGAAGCGCAACATGCAAGGTTGCTTTTGTAGGTGGGGGTTTATGTGATTGACTTGGGCCTGTTCATCCTGATCTTCGTTGCAAACTAGTTACTTTCTGCTTCATTACTCCTGCCATGTTGTCTATTCTGTATTGATTAATTCTAGTTAACTAGATGGTCTAGTTATGTATCTTGTAGTTCGTTAATTGTGATATGTAGCTTAAGTTCAGCTCTATTAGTTTAGAATGTTAATAGCCTGATGCTAAACATGTTCATGGTTTCTTTCTTCCTTTTTTTTTTCTCAACTAAAGAAAAGGTGATAATTTGTAGCATGTAGCTTGTGAGGTTATTCCTAATACTCAGTTCTCATACTACTCAGAACATGAAGACAAGATAGATTCTTGGATGTAACTGTTGCCTTGTGCATTGCTGTTGTATCTGTATAACTGAATTGACAACTGTGCCTGACCATCCCTTGAAACTATTACTGATGGTGTATCAATTGTTTTTAGTGTTATCTTG
CDS Sequence
- >LOC_Os06g41730.1
ATGGCCCAGTTTAGGTCTGCGCCTGTGGAAAGCGAGGCGGAGCCAGGCGCCGATGGCCCTGTGGATGAAGCCAATGCTGTGGAAGAGGAGAAATCTGGTAAGGGTGAGGATGGCATTGAGGAGGCTGCCGATACCGTTGATTCCGTGAAGGATTCAGCAAAGCCTGAAGGCATGGATGCAAAGGAGGAGGCGGTGGAGCAGGAGGGTGGGGCCGCAGCGGATAAGGCAAAGGATATTCCTGTGACTAGTAACGGTAAGACGGATGCTGGCGGAAATGAGGTGGCTGAAATGAAGGTTGAAAAATTGGAGAATGGTGATGGGCATTTGAAGGCGGACGGCGATAGCAATGGTGATAACAAGGGTGCTGATGGTGAGAAACAGCTTATGTTAGCGTCAGCTGGGGAGGACGTGGAGGACCCGGTGCTGTCCAAGCTTGCAAGCAACTCCTTCATGTTTGATTACAGCTGTGGTGGTGATGACTCGGGGACTGAGGAGGAGCAGGCTGCTTTCATGAAGGAACTTGAGCGGTTTTACAGGGAGAAGCTTATGGAATTCAAGCCCCCGAAGTTCTATGGTGAAGGGTTGAATTGCCTCAAGTTGTGGAGACAAGTGACTGGGTTGGGTGGCTATGATCAGGTGACATCGTGCAAACTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACAACTGTTTCATGGACCTTCCGTAACTTCTATGAGAAGGCACTCCTTGAATATGAGAAACACAAAATCGAAACGGGCGAGTTTCAAGTTGCTGCATCTAATTTAACAGAGAGGATTACTTCTGAAAGTCAGGTTGGCATCCATGCTTCTGGTTCTGGAAGAGCTAGAAGAGAATCTGCAACCCGAGCTATGCAAGGCTGGCACTCTCAGCGCTTGCTTGGCAATGGTGAAATTGCTGATCCAATAATTAAAGATAAAGGGACGGTGTCTGTCTTAAAAAAGGATAAAACTCCTAAAAGCAGCGGTTCTGCCAAGAGGAAAAGGACACCGACCTTGGAAGATGACAGGATTGTACCATATAAACCTGACAAGCTACAAAATGACTCAATGGTTCTTGACCTTGGCCCTCCAGCTGATTGGGTAAAGATAAACGTTCGGAGAACCAAAGATTGCTATGAAGTCTATGCATTGGTTCCTGGCCTTCTGCGTGAGGAGGTACATGTTCAGTCAGATCCTGCTGGCCGTTTGATAGTTACTGGAGAGCCTGAGCAACTAGACAATCCTTGGGGTGTTACTCCATTCAAGAAGGTTATTAGTTTGCCCTCCCGCATTGATCCTCATCAAACTTCGGCAGTTGTCACTCTCCATGGACAGCTATTTGTCCGTGCACCATTCGAGCAGTCAAAGTAA - >LOC_Os06g41730.2
ATGGCCCAGTTTAGGTCTGCGCCTGTGGAAAGCGAGGCGGAGCCAGGCGCCGATGGCCCTGTGGATGAAGCCAATGCTGTGGAAGAGGAGAAATCTGGTAAGGGTGAGGATGGCATTGAGGAGGCTGCCGATACCGTTGATTCCGTGAAGGATTCAGCAAAGCCTGAAGGCATGGATGCAAAGGAGGAGGCGGTGGAGCAGGAGGGTGGGGCCGCAGCGGATAAGGCAAAGGATATTCCTGTGACTAGTAACGGTAAGACGGATGCTGGCGGAAATGAGGTGGCTGAAATGAAGGTTGAAAAATTGGAGAATGGTGATGGGCATTTGAAGGCGGACGGCGATAGCAATGGTGATAACAAGGGTGCTGATGGTGAGAAACAGCTTATGTTAGCGTCAGCTGGGGAGGACGTGGAGGACCCGGTGCTGTCCAAGCTTGCAAGCAACTCCTTCATGTTTGATTACAGCTGTGGTGGTGATGACTCGGGGACTGAGGAGGAGCAGGCTGCTTTCATGAAGGAACTTGAGCGGTTTTACAGGGAGAAGCTTATGGAATTCAAGCCCCCGAAGTTCTATGGTGAAGGGTTGAATTGCCTCAAGTTGTGGAGACAAGTGACTGGGTTGGGTGGCTATGATCAGGTGACATCGTGCAAACTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACAACTGTTTCATGGACCTTCCGTAACTTCTATGAGAAGGCACTCCTTGAATATGAGAAACACAAAATCGAAACGGGCGAGTTTCAAGTTGCTGCATCTAATTTAACAGAGAGGATTACTTCTGAAAGTCAGGTTGGCATCCATGCTTCTGGTTCTGGAAGAGCTAGAAGAGAATCTGCAACCCGAGCTATGCAAGGCTGGCACTCTCAGCGCTTGCTTGGCAATGGTGAAATTGCTGATCCAATAATTAAAGATAAAGGGACGGTGTCTGTCTTAAAAAAGGATAAAACTCCTAAAAGCAGCGGTTCTGCCAAGAGGAAAAGGACACCGACCTTGGAAGATGACAGGATTGTACCATATAAACCTGACAAGCTACAAAATGACTCAATGGTTCTTGACCTTGGCCCTCCAGCTGATTGGGTAAAGATAAACGTTCGGAGAACCAAAGATTGCTATGAAGTCTATGCATTGGTTCCTGGCCTTCTGCGTGAGGAGGTACATGTTCAGTCAGATCCTGCTGGCCGTTTGATAGTTACTGGAGAGCCTGAGCAACTAGACAATCCTTGGGGTGTTACTCCATTCAAGAAGGTTATTAGTTTGCCCTCCCGCATTGATCCTCATCAAACTTCGGCAGTTGTCACTCTCCATGGACAGCTATTTGTCCGTGCACCATTCGAGCAGTCAAAGTAA
Protein Sequence
- >LOC_Os06g41730.1
MAQFRSAPVESEAEPGADGPVDEANAVEEEKSGKGEDGIEEAADTVDSVKDSAKPEGMDAKEEAVEQEGGAAADKAKDIPVTSNGKTDAGGNEVAEMKVEKLENGDGHLKADGDSNGDNKGADGEKQLMLASAGEDVEDPVLSKLASNSFMFDYSCGGDDSGTEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQVAASNLTERITSESQVGIHASGSGRARRESATRAMQGWHSQRLLGNGEIADPIIKDKGTVSVLKKDKTPKSSGSAKRKRTPTLEDDRIVPYKPDKLQNDSMVLDLGPPADWVKINVRRTKDCYEVYALVPGLLREEVHVQSDPAGRLIVTGEPEQLDNPWGVTPFKKVISLPSRIDPHQTSAVVTLHGQLFVRAPFEQSK* - >LOC_Os06g41730.2
MAQFRSAPVESEAEPGADGPVDEANAVEEEKSGKGEDGIEEAADTVDSVKDSAKPEGMDAKEEAVEQEGGAAADKAKDIPVTSNGKTDAGGNEVAEMKVEKLENGDGHLKADGDSNGDNKGADGEKQLMLASAGEDVEDPVLSKLASNSFMFDYSCGGDDSGTEEEQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYEKHKIETGEFQVAASNLTERITSESQVGIHASGSGRARRESATRAMQGWHSQRLLGNGEIADPIIKDKGTVSVLKKDKTPKSSGSAKRKRTPTLEDDRIVPYKPDKLQNDSMVLDLGPPADWVKINVRRTKDCYEVYALVPGLLREEVHVQSDPAGRLIVTGEPEQLDNPWGVTPFKKVISLPSRIDPHQTSAVVTLHGQLFVRAPFEQSK*