Gene Details:
- MSU gene ID: LOC_Os06g39480
- RAPdb gene ID: Os06g0595900
- Gene Symbol: LC3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- LC3 deficiency results in increased leaf inclination and enhanced expressions of OsIAA12 and OsGH3.
- 2, and interacts with LC3 to synergistically suppress auxin signaling.
Function-related keywords:
Literature:
- SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling . DOI: 10.1371/journal.pgen.1007829 ; PMID: 30496185
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g39480.1
ATCGAGCCGCAACAAAAGCGGAAATAAATCCCCCACAAACCCTACCCTTCTCTCCCCTCCACTCCCCCACCTCCGCGCCTCTCTCCGCCGTGTTCCTCCCGCCCGCCGCCGCCTTCCCGCCGGACCTAGCTCCTCCCCCGCCGTCCTCGACCTCACCGGAGGTGGCGTGGTGCGGGAACGGGCAGGGCGCCGTGATGGAGATCCCCAAGCAGGGGCAGCCGCCGCGGGTGGCGGGGACGCCGCCGACATTGCCTGGGGCGATTACCCACACTACGCAGGTTGGGTACCCGGCCGTGTTCTACAATGGCAACTGGGGCGCGCAGGTGCCGGCCAGCAGCTACCTGATCGTGCCCATGAGCGAGCCGCCGGCGCAGGTTGGTGTGCCCAGGCCCAACGCGCTGGGCCTCTCCGGGTCCGGGGCCAGGCCGTTGAGTAGGGTGTCGCTTAGGCCGCCGCAACAGGTGCTGAGTGTCCAGACAGCTTTGCCTGGTATGGCCGCGATGATGCCATCGCCGTCTATGATAGCAGGTAAGAAGATGGCAGCGTCGCCGAAGGTTCAGATGCTGAAGTCTGTGCCCTTTCGGTCTGCTGGTAGCAAGCGTCCTGCGCAGGAACTGCTGCCCAAGGCACAGCCGCAATTATTTGAGTCCGTGAGATCAAAGTTCAGAGAGACTCTGGCTGCTGCCCTGAATATGGATTCTGACCAACAGTGTGCCCCGCAATCCGTTGAAACCGTGTCACATGTTGGATCTGCTAGCGAGAACAAGCAAGCCGATGGTGCTGGTATTGATTCTGTCACAGAGACTAGTGCTTTGAAAAGCGGGCAACATAACATGTTAAGTAGCAATTCGGCATCAAACATGTCGATCAAGATGAGCTTCTGCAAGGCCATGGACTTTGCTGGTCTTCTGACGTTGTTGGAGCTTCTGAAACTATTTCTCAATCCGATCCAGACAGAGTCAGAAAATCTGATATTGATGAAGGTGTTGATGTATCTCTGATTGAGCATGAGTCTAAAAGAATAAAGACTGATGATGGGGCAGCAGAAGAAAAGAAGAGTGTAACCCAAAAGGCCCAAATTTTAGCATTTGAAATTGAAGGTGAGCTGTTCACTTTATTGGGAGGAGTTAACAAGAAATACAAGGAGAAGGGTCGATCACTTCTGTTCAACTTAAAAGATAAAAGTAATCCTGTACTGAGGGGACGTGTCTTGTCTGGAGATATAACACCCAAACGCCTATGTTCAATGACTACTGAAGAACTCGCTTCAAAGGAACTTTCAGACTGGCGGTTGGCTAAGGCTGAAGAGCTTGCAAAGATGGTGGTTCTTCCTAGTAAAGAAGTGGATGTTAGACGCTTGGTGAGGAAAACACACAAAGGAGAATTTCAAGTTGAGGTGGAAGAAACTGACGGTATCTCTGTGGAGGTTGGAATTGGGGGTGATTTGCTTTCGCATGTTCCATCAAGACCTACTGAAGGTCAAACCAAAACCGATGATAAAAGTGTACACACGGAAGAAAAAGAATCAGACAATAGTGAGCAAGATGGAGTTATCGTGACAGGCGGCAATAACATGCCAAGCAATTTAGAACATACAGAAAATGAGAAAACTGATCTGATGCAGGAACTGATGGTAGATGACCTGAAAGATACAGAGAATCTTCCACCAATTATGTCACTGGACGAATTCATGGAGACCCTTGATTCTGAACCACCTTTCGAAGATGATTCCACTCAAACTGTGAAAGATGATCCTAATTCTATTGAGAAAACTGACATTTCATTGAAATCGGAAGATTCTTCCAAAAATGTGGATAGTGCTTCTGCATCAGATTCTCAACTTGATCCGCAAACATTATCTCCTCAAGATAAGTTTGAGTCCAAGTTACAGTCACCCAAAAAAGACGCAGGCTCAATTTTGTTTCCAGTTGAACAAATAAAGGAAGATCTGTTAGTCAAATCCTCCCCTGAAAAGGCCAATGCTGAAAACATTGATACTGGCAGTCAGTCGATCCCTGAATCTATCACGGATTGTAAATCAGCTCCTGATGCTTTGCTGACACATGACAGTGTATGGGAGGGAACAATTCAACTTTCCTTGTCATCACTCACAAATGTTGTTGCGATCTTCAAAAGCGGTGAAAAGACATCCACAAACGAGTGGCGCCATTTCCTTGATATCAAGGGAAGAGTCAGGCTCAGTGCTTTTCAAGAATTTCTTGAACAACTTCCTAAATCCAGGAGCCGTGCTATAATGGTAACTGAGTTGCGTTGGAAGGAGGGCTCTCTTGAGAGTGGGCGCCAGCATCTCTTGCGGACCATTGACTCATATATTGCAGACGAGAGAGTAGGACTAGTGAAGCCTGCAGATGGAGTGGAGCTTTACCTCTGCCCTTCTCAAGGGAAGGCAGCACAGATACTTGCAGAGCACCTACCCAAGGAGCAGTCGAGCAGCTTAACCGTGACAGGAACATCAGCTATTGGAGTCGTCGTGTGGCGGAGGCCCCATGTTTCACCTAGGATACCCGCCAGGAACGATGGCTCCAGAAACCAATCCATCTCGAGGAAGCAGCATGCCGTGATTGCCAGTGCAGTGCCCTTGTCTTCCAAGCCTACCAATGAGCGTCAGCACCACGGTCAGGATGTTGTAACTGATGATGTTCCTCCGGGCTTTGGCCCTGGTGTTGTTAGGGAAGACGATGACCTACCTGAATACGATTTTGTTACCGTCCCAAACGCAGCTGCCAACGTAGTACCATCACGACAAGCACACAGGAGCCAGCAGCAGCATTCTCAGGCCGCGTCCCGCCGCCCGGTAGACCATGTGAGGGAGATGGTTCGCAAGTATGGTAGCAGATCCGCTGCCGCAGCCCAACCCTGGGAGGATGATGACGATGATGACATACCAGAATGGGATCCAAACCAAAGCAATCTGAATCTCCAGCAAACACGGCATGCTATTCCACAGCCACCGTTGCCTCCACCCGGACCTGTTCATCAGCAAATGCACGCGTATCATCAGCAGCATCAGCAACAGCAGCAGCATTACCAATCCATTCAGCAGTATCACGCAACACAGGAATCGCAGAACACCTTGTCCCAGGCTTACTACGTCCAGTCCCACTCACAGCAGCATTCCGTGCCCGTGCAGCAGCTGACTCATTTGCAGCCTGGCTGGCAGACCACCGCCCAGTGGCTGGCCGCCGGCGCCGCGCATTCCGGCTTGCCGGCGAACAACGTCGTGCAGCAGTACTGCACTTCCGCGACGCCTGACGGTAGTGGCCAAGGCTACGCTACTGGGAACCAAGGCTCCATGCCTTGGAACCTACAGTAGCTACGTTACCTTTGTGCGAGTCAGCAAGCATCCGATGTTTTTGGCCCCCTATTCTCCCTTTGTGTCTACCATGCAGTTCATGTAATTATATATCATGCGAACTGCACCACCCAGATAAAAATACAAGTGTTACTACTAGCCGCTTAGGTAGTTGCTGGTTGTATGCAAATGGTGTAGCAGTAGACATGTAGTAGCAAGAACTTGATGCCATGAGCATATGCCTGCTAGGCTGCTACTTTGGTTTTTTGGCACTGCCGTATCCAGCTGCCCAATAGTGCGCTCCAAA
CDS Sequence
- >LOC_Os06g39480.1
ATGACTACTGAAGAACTCGCTTCAAAGGAACTTTCAGACTGGCGGTTGGCTAAGGCTGAAGAGCTTGCAAAGATGGTGGTTCTTCCTAGTAAAGAAGTGGATGTTAGACGCTTGGTGAGGAAAACACACAAAGGAGAATTTCAAGTTGAGGTGGAAGAAACTGACGGTATCTCTGTGGAGGTTGGAATTGGGGGTGATTTGCTTTCGCATGTTCCATCAAGACCTACTGAAGGTCAAACCAAAACCGATGATAAAAGTGTACACACGGAAGAAAAAGAATCAGACAATAGTGAGCAAGATGGAGTTATCGTGACAGGCGGCAATAACATGCCAAGCAATTTAGAACATACAGAAAATGAGAAAACTGATCTGATGCAGGAACTGATGGTAGATGACCTGAAAGATACAGAGAATCTTCCACCAATTATGTCACTGGACGAATTCATGGAGACCCTTGATTCTGAACCACCTTTCGAAGATGATTCCACTCAAACTGTGAAAGATGATCCTAATTCTATTGAGAAAACTGACATTTCATTGAAATCGGAAGATTCTTCCAAAAATGTGGATAGTGCTTCTGCATCAGATTCTCAACTTGATCCGCAAACATTATCTCCTCAAGATAAGTTTGAGTCCAAGTTACAGTCACCCAAAAAAGACGCAGGCTCAATTTTGTTTCCAGTTGAACAAATAAAGGAAGATCTGTTAGTCAAATCCTCCCCTGAAAAGGCCAATGCTGAAAACATTGATACTGGCAGTCAGTCGATCCCTGAATCTATCACGGATTGTAAATCAGCTCCTGATGCTTTGCTGACACATGACAGTGTATGGGAGGGAACAATTCAACTTTCCTTGTCATCACTCACAAATGTTGTTGCGATCTTCAAAAGCGGTGAAAAGACATCCACAAACGAGTGGCGCCATTTCCTTGATATCAAGGGAAGAGTCAGGCTCAGTGCTTTTCAAGAATTTCTTGAACAACTTCCTAAATCCAGGAGCCGTGCTATAATGGTAACTGAGTTGCGTTGGAAGGAGGGCTCTCTTGAGAGTGGGCGCCAGCATCTCTTGCGGACCATTGACTCATATATTGCAGACGAGAGAGTAGGACTAGTGAAGCCTGCAGATGGAGTGGAGCTTTACCTCTGCCCTTCTCAAGGGAAGGCAGCACAGATACTTGCAGAGCACCTACCCAAGGAGCAGTCGAGCAGCTTAACCGTGACAGGAACATCAGCTATTGGAGTCGTCGTGTGGCGGAGGCCCCATGTTTCACCTAGGATACCCGCCAGGAACGATGGCTCCAGAAACCAATCCATCTCGAGGAAGCAGCATGCCGTGATTGCCAGTGCAGTGCCCTTGTCTTCCAAGCCTACCAATGAGCGTCAGCACCACGGTCAGGATGTTGTAACTGATGATGTTCCTCCGGGCTTTGGCCCTGGTGTTGTTAGGGAAGACGATGACCTACCTGAATACGATTTTGTTACCGTCCCAAACGCAGCTGCCAACGTAGTACCATCACGACAAGCACACAGGAGCCAGCAGCAGCATTCTCAGGCCGCGTCCCGCCGCCCGGTAGACCATGTGAGGGAGATGGTTCGCAAGTATGGTAGCAGATCCGCTGCCGCAGCCCAACCCTGGGAGGATGATGACGATGATGACATACCAGAATGGGATCCAAACCAAAGCAATCTGAATCTCCAGCAAACACGGCATGCTATTCCACAGCCACCGTTGCCTCCACCCGGACCTGTTCATCAGCAAATGCACGCGTATCATCAGCAGCATCAGCAACAGCAGCAGCATTACCAATCCATTCAGCAGTATCACGCAACACAGGAATCGCAGAACACCTTGTCCCAGGCTTACTACGTCCAGTCCCACTCACAGCAGCATTCCGTGCCCGTGCAGCAGCTGACTCATTTGCAGCCTGGCTGGCAGACCACCGCCCAGTGGCTGGCCGCCGGCGCCGCGCATTCCGGCTTGCCGGCGAACAACGTCGTGCAGCAGTACTGCACTTCCGCGACGCCTGACGGTAGTGGCCAAGGCTACGCTACTGGGAACCAAGGCTCCATGCCTTGGAACCTACAGTAG
Protein Sequence
- >LOC_Os06g39480.1
MTTEELASKELSDWRLAKAEELAKMVVLPSKEVDVRRLVRKTHKGEFQVEVEETDGISVEVGIGGDLLSHVPSRPTEGQTKTDDKSVHTEEKESDNSEQDGVIVTGGNNMPSNLEHTENEKTDLMQELMVDDLKDTENLPPIMSLDEFMETLDSEPPFEDDSTQTVKDDPNSIEKTDISLKSEDSSKNVDSASASDSQLDPQTLSPQDKFESKLQSPKKDAGSILFPVEQIKEDLLVKSSPEKANAENIDTGSQSIPESITDCKSAPDALLTHDSVWEGTIQLSLSSLTNVVAIFKSGEKTSTNEWRHFLDIKGRVRLSAFQEFLEQLPKSRSRAIMVTELRWKEGSLESGRQHLLRTIDSYIADERVGLVKPADGVELYLCPSQGKAAQILAEHLPKEQSSSLTVTGTSAIGVVVWRRPHVSPRIPARNDGSRNQSISRKQHAVIASAVPLSSKPTNERQHHGQDVVTDDVPPGFGPGVVREDDDLPEYDFVTVPNAAANVVPSRQAHRSQQQHSQAASRRPVDHVREMVRKYGSRSAAAAQPWEDDDDDDIPEWDPNQSNLNLQQTRHAIPQPPLPPPGPVHQQMHAYHQQHQQQQQHYQSIQQYHATQESQNTLSQAYYVQSHSQQHSVPVQQLTHLQPGWQTTAQWLAAGAAHSGLPANNVVQQYCTSATPDGSGQGYATGNQGSMPWNLQ*