Gene Details:

Functional Descriptions:

  • Conclusion: OsGATA16 is a GATA transcription factor, which improves cold tolerance at seedling stage in rice.
  • Overexpression of OsGATA16 improves cold tolerance of rice at seedling stage.
  • In addition, haplotype analysis showed that OsGATA16 polarized between the two major rice subspecies japonica and indica, and had a non-synonymous SNP8 (336G) associated with cold tolerance.
  • Additionally, OsGATA16 has a non-synonymous SNP8 (336G) associated with cold tolerance on CDS region.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os06g37450.1
    TAATCGTGCTGGACCTCGCAAAATTGCCCCTCCAACCGCATCAACACTCGTCGCGCGAAGCGTACCATCGTCTCTCTCATCTTCCTCGCGGTCTCATCCTGATCGATCTCTGCGAGTTTATCCAATATCTGTACTCGCAAACTAGCTAGAGAGATCTAGTTAGTAGCTAGGCAGTTGCTGCCTCTCATGTCTACCATCTACATGAGTCAGCTCTCAGCTGCTCTCCCTCTCATGGAGGGGGAGCACCACCATCACCACCAGGATCATCACCAAGGCCACTTCCAAGCCTTCTCCCTGCAGCCTAAGGATCCCCCAGTCTTATTCCCCTTTGTGATCAGTAGAAGAAGCAGCAGCAGCAGCCCTAGCGACAGCACCACTCTAAGCTATGGTTCAGACCATCACTTGACACAGCAGCAGCAGCATCAGCATCAAGCCATGCTTGAGCCCCAAAATATGATTGGAGGATCATCCGCTGGCATCTTTGCGACGCCGTTCCCGACCGTCAAGAGCATCCGCGACGACATGATCGAGCGGTCGCAGTTCGATCCATACGATACCGAGAAGCTGCAGGCGAGCTGCGGGTTAGCCAAGGTCGTCGCCGGCGGCAAGTGGAGCGCGGTGCCAGCGGCCAAGATGAAGATCACGAGGAAGATGGGTGAGCCGTCGTCCGGTGTCACTGGCGGGGCTGCGACGACGGTGGCGCCGAAGAAGCCGAGGAGGAGGCCGGCGCAGGCGTACGAGGATCACGGCCATGGCGGCGCCATGGGCCAAGCTTTTGGCGTGATTAGGGTGTGCTCCGACTGCAACACCACCAAGACTCCCTTGTGGAGGAGTGGCCCGTGCGGCCCCAAGTCGCTTTGCAACGCGTGCGGCATCAGGCAGAGGAAGGCGCGGCGGGCGATGATGGCCTCCGGACTACCAGCGTCCCCCAACGCCGCCGGCCCCAAGGCGGCCGCACATAGCGGCGCCGCTGCGGTGGCGGCTGCGCAGCCGAAGGTGAAGAAGGAGAAGAGAGCCGACGTCGACCGGTCGTCGCTGCCGTTCAAGAAACGGTGCAAGGTCGTCCAGGTCGAGGATCATCAAACGCTGCCCGCCGCCACAAACGCAGCCGCCGCAGCTGCCATGGAGGAGACGGCCGAGTCCGCCACCGTCGCCCCGCCCCCGGCGCCGACGACGAGGGGTGGTACTCTCGTCGACAGCATCGGGCTCAGCTGGAGCAAGACCCATGCCGCCGCCACCGCCTCCTGCAGCTTCCGGCCGTCACCGGTGGCTCCCGGCTTCGCGGCGGCGGTGCAGGACGAGATCACTGACGCCGCCATGCTGCTCATGACGCTGTCCTGCGGGCTTGTCCGGAGCTGAGAAAGAAAAGCTATACTTCATCTCTGCATGCATCCATCGATCGATCGATTGGCACCAAGCTAGAGAGACCAATCGATGGAGATGGAGAGAGGTGCAGGCTTTTTGCAGCTAGTGCGTTAGCCTGTTCTTGCTCGCTCGATCGATCGTACACTGCCCCCCAGTTGGAATGTCTCTTGGCGTCTTGTTTCCTGTTCGAGTCTTGTGATCTCTGTTACTTTGTGCACTGTACTAGAGAGTGAGAGAGAGAGTGAGGTAGAAACATCAAGAGGAGATTAGAGGAGAAAGAATAATTAAGAGAAAAGTGTGAGCTAGCTAGGTAAGATTTACTGTACTGTGAGTTCAATTTGGAGTAAGCTTTTTTGGGCTGCTTCACGGCTAATTATGCCACTGGCTGCTATATATGTATGTTTGTTCTTCGTTTAA
CDS Sequence
  • >LOC_Os06g37450.1
    ATGTCTACCATCTACATGAGTCAGCTCTCAGCTGCTCTCCCTCTCATGGAGGGGGAGCACCACCATCACCACCAGGATCATCACCAAGGCCACTTCCAAGCCTTCTCCCTGCAGCCTAAGGATCCCCCAGTCTTATTCCCCTTTGTGATCAGTAGAAGAAGCAGCAGCAGCAGCCCTAGCGACAGCACCACTCTAAGCTATGGTTCAGACCATCACTTGACACAGCAGCAGCAGCATCAGCATCAAGCCATGCTTGAGCCCCAAAATATGATTGGAGGATCATCCGCTGGCATCTTTGCGACGCCGTTCCCGACCGTCAAGAGCATCCGCGACGACATGATCGAGCGGTCGCAGTTCGATCCATACGATACCGAGAAGCTGCAGGCGAGCTGCGGGTTAGCCAAGGTCGTCGCCGGCGGCAAGTGGAGCGCGGTGCCAGCGGCCAAGATGAAGATCACGAGGAAGATGGGTGAGCCGTCGTCCGGTGTCACTGGCGGGGCTGCGACGACGGTGGCGCCGAAGAAGCCGAGGAGGAGGCCGGCGCAGGCGTACGAGGATCACGGCCATGGCGGCGCCATGGGCCAAGCTTTTGGCGTGATTAGGGTGTGCTCCGACTGCAACACCACCAAGACTCCCTTGTGGAGGAGTGGCCCGTGCGGCCCCAAGTCGCTTTGCAACGCGTGCGGCATCAGGCAGAGGAAGGCGCGGCGGGCGATGATGGCCTCCGGACTACCAGCGTCCCCCAACGCCGCCGGCCCCAAGGCGGCCGCACATAGCGGCGCCGCTGCGGTGGCGGCTGCGCAGCCGAAGGTGAAGAAGGAGAAGAGAGCCGACGTCGACCGGTCGTCGCTGCCGTTCAAGAAACGGTGCAAGGTCGTCCAGGTCGAGGATCATCAAACGCTGCCCGCCGCCACAAACGCAGCCGCCGCAGCTGCCATGGAGGAGACGGCCGAGTCCGCCACCGTCGCCCCGCCCCCGGCGCCGACGACGAGGGGTGGTACTCTCGTCGACAGCATCGGGCTCAGCTGGAGCAAGACCCATGCCGCCGCCACCGCCTCCTGCAGCTTCCGGCCGTCACCGGTGGCTCCCGGCTTCGCGGCGGCGGTGCAGGACGAGATCACTGACGCCGCCATGCTGCTCATGACGCTGTCCTGCGGGCTTGTCCGGAGCTGA
Protein Sequence
  • >LOC_Os06g37450.1
    MSTIYMSQLSAALPLMEGEHHHHHQDHHQGHFQAFSLQPKDPPVLFPFVISRRSSSSSPSDSTTLSYGSDHHLTQQQQHQHQAMLEPQNMIGGSSAGIFATPFPTVKSIRDDMIERSQFDPYDTEKLQASCGLAKVVAGGKWSAVPAAKMKITRKMGEPSSGVTGGAATTVAPKKPRRRPAQAYEDHGHGGAMGQAFGVIRVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMMASGLPASPNAAGPKAAAHSGAAAVAAAQPKVKKEKRADVDRSSLPFKKRCKVVQVEDHQTLPAATNAAAAAAMEETAESATVAPPPAPTTRGGTLVDSIGLSWSKTHAAATASCSFRPSPVAPGFAAAVQDEITDAAMLLMTLSCGLVRS*