Information report for OsHrd1;MAL
Gene Details
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Functional Descriptions
- Co-immunoprecipitation experiments demonstrated that OsHrd3 interacts with components of the Hrd1 ubiquitin ligase complex such as OsOS-9 and OsHrd1 in rice protoplasts.
- MAL RNA-interfered (MRi) transgenic plants exhibited a phenotype with shorter crown root length and lower crown root number, accompanied by a lower cell division rate.
- The low division rate was observed in the root meristem exactly where MAL was expressed.
- Furthermore, transcriptome data revealed that cell wall macromolecule metabolism-related genes and redox-related genes were enriched in MAL RNAi lines.
Functional Keywords
- Ubiquitin , root , cell-division , meristem , cell-wall , crown , crown-root , root-length , root-meristem , root-number
Literature and News
- OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm . DOI: 10.1093/jxb/erv229 ; PMID: 25977235
- MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice . DOI: 10.1007/s11103-020-01053-4 ; PMID: 32918256
Gene Resources
- UniProt: Q5Z880
- EMBL: AK073960, AP003524, AP004007
- AlphaFoldDB: Q5Z880
- EnsemblPlants: Os06t0301000-01
- Gramene: Os06t0301000-01
- KEGG: dosa:Os06g0301000
- Orthologous matrix: ANLTMFT
- InterPro: IPR001841, IPR013083, IPR050731
- PANTHER: PTHR22763, PTHR22763:SF184
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- OrthoDB: Q5Z880
- SWISS-MODEL: Q5Z880
- Conserved Domain Database: cd16479
- eggNOG: KOG0802
Sequences
cDNA Sequence
- >LOC_Os06g19680.1
CCAAGATCAAACCCGTTCGTTTCACTCCCGGAGAGGAAGAAGAAAAAAACACAAAAACCGAAAAGAAAAGAAAAAAAAAACAACAACAACAAGATTTTTTTTTTCCGCAAACCCTCTCGAACCAAAATCGCGGCGGCTTTATCCACGAATCAAAAAAAATCCCCGCGACAATGTCTCCGCCCAATCTTTCCTCCTCCTCCTAGAGCCGGAGAATCCACCCGCCATCACCATCGTGCTCGCAATCGCATCGCCTGTGGCGGGATCGCCGGCGGCGGCGGCGGAGATGATTCGGCTGCAGACGTACGCGGCGTTCAGCCTGATGGCGACGGCGACGGCGGTGTACTACGCGTTCAGCAGCAGGGAGCAGTTCTACCCGGCGATGGTGTACCTCTCCACCTCCAAGATCTGCTTCGTGCTGCTCCTCAACACGGGCCTCGTCGCCATGTGCGTCGCCTGGCAGCTCGTCAAGCGGCTCTTCCTGGGGACGCTCCGGGAGGCCGAGGTGGAGCGGCTCAACGAGCAGGCGTGGCGGGAGGTGGTGGAGATCCTCTTCGCGGTCACCATCTTCAGGCAGGACTTCTCCGTCTCCTTCCTCGCCATGGTCGCCGCGCTGCTGCTCGTCAAGGCGCTGCACTGGCTCGCGCAGAAGAGGGTCGAGTACATCGAGACCACGCCCTCCGTGCCCATGCTGTCGCACGCCAGGATCGTCTCCTTCATGCTGTTCCTGCTCGTCGTCGACTGCCTCTTCCTGTCCAACTCGCTCAGGTCGCTCATACACAAGCGGGAGGCGTCTGTTGCAATCTTCTTTTCGTTTGAGTACATGATACTAGCAACATCCACAGTATCGACATTCGTGAAATATATATTCTATGTCAGTGACATGCTAATGGAAGGTCAATGGGAGAAAAAGGCAGTGTATACATTTTACTTGGAGCTCATCAGTGACCTTGTACACTTGTCTTTGTATATGCTCTTCTTCATAGCTATCTTCCTGAACTATGGTGTCCCACTGCACTTGATACGTGAGCTGTATGAGACATTTCGCAACTTCAGAATCCGTATCGCGGATTATGTACGCTACAGAAAGATAACTTCCAACATGAATGAAAGATTTCCAGATGCCACAGCAGATGAGCTCAATGCGAGTGATGCTACATGTATTATTTGCCGTGAGGAGATGACCACAGCAAAAAAGCTGCTTTGTGGGCACCTGTTCCATGTCCATTGTTTGAGGTCATGGTTAGAACGCCAACACACTTGCCCTACATGTAGAGCTCCAATTCTGCCCCCAGATAATGGGCGTACTGCAGCACGTCCGCATGGAGTTCATCCTGGAGTTCAGCCTGTTCCAGGTAATGGCACACCAGGTTCAGAACGAGCAGCAGGTGAGAACATAAGCAGGCGCCAAGCAAAACTTGAAGCAGCTGCTTCGGCTGCTTCCCTATATGGGAGATCCTTTGCTTATCCTCCAGCGAACAATTTGAACAGGTATTCAACTCCTCCACAGTCTACATCAAATGGTCCACAATCAGGAGAAGCAAGTACTTCCAATCAATCGCCAAAAGGCCATGCAACTGCCGATCCTTCAGCGCCTACTTTTTATGCACGTGGTGCTGTTAGTTCAGTGACAACTACCAGGGAACTTGAAAGTTCACTGCAGAAGGCATATGAAAATGCTATAAAGAGCCAGATAGAGATGTTGCAAATCCAGCTGCAAATGTTTCAGCATGGGGCTACTTCATCAGCGACTAACAATGAAAACGGTGAGCACACAAAAAGCGACTGAAGTTGTAAATAAGGGGAAGGTGAGGGCTGAACAAACAAAGGATATATAGATGGTGACTTGGCAAATACCCGAGGAGAAACTCCCATGCCATGCTTTATTTCGATTTTGGTAGGCTCGTTCATTTGTATGTCCATGTTAGAGGCCTCCTATCAACATCAGATATTTATTTGCTTAATGTGGTCATTTGAGTAGAGATGCAGTGTTGTAACTACGACTAATTTCAGATTAGCACATCTGGGAAAAAGCAACATGATTCTTCAATCTGAACCATCAGTATGCTCCCTCTTTTTTCTGGCATTTTTGTTTGTACGCTATAGTTGGATTTATACTGTCCAGACATTCAATACTGAATTTAATAAATGTGAATATGGTTTAAGTCGCTCTTCTGAATT - >LOC_Os06g19680.2
CCAAGATCAAACCCGTTCGTTTCACTCCCGGAGAGGAAGAAGAAAAAAACACAAAAACCGAAAAGAAAAGAAAAAAAAAACAACAACAACAAGATTTTTTTTTTCCGCAAACCCTCTCGAACCAAAATCGCGGCGGCTTTATCCACGAATCAAAAAAAATCCCCGCGACAATGTCTCCGCCCAATCTTTCCTCCTCCTCCTAGAGCCGGAGAATCCACCCGCCATCACCATCGTGCTCGCAATCGCATCGCCTGTGGCGGGATCGCCGGCGGCGGCGGCGGAGATGATTCGGCTGCAGACGTACGCGGCGTTCAGCCTGATGGCGACGGCGACGGCGGTGTACTACGCGTTCAGCAGCAGGGAGCAGTTCTACCCGGCGATGGTGTACCTCTCCACCTCCAAGATCTGCTTCGTGCTGCTCCTCAACACGGGCCTCGTCGCCATGTGCGTCGCCTGGCAGCTCGTCAAGCGGCTCTTCCTGGGGACGCTCCGGGAGGCCGAGGTGGAGCGGCTCAACGAGCAGGCGTGGCGGGAGGTGGTGGAGATCCTCTTCGCGGTCACCATCTTCAGGCAGGACTTCTCCGTCTCCTTCCTCGCCATGGTCGCCGCGCTGCTGCTCGTCAAGGCGCTGCACTGGCTCGCGCAGAAGAGGGTCGAGTACATCGAGACCACGCCCTCCGTGCCCATGCTGTCGCACGCCAGGATCGTCTCCTTCATGCTGTTCCTGCTCGTCGTCGACTGCCTCTTCCTGTCCAACTCGCTCAGGTCGCTCATACACAAGCGGGAGGCGTCTGTTGCAATCTTCTTTTCGTTTGAGTACATGATACTAGCAACATCCACAGTATCGACATTCGTGAAATATATATTCTATGTCAGTGACATGCTAATGGAAGGTCAATGGGAGAAAAAGGCAGTGTATACATTTTACTTGGAGCTCATCAGTGACCTTGTACACTTGTCTTTGTATATGCTCTTCTTCATAGCTATCTTCCTGAACTATGGTGTCCCACTGCACTTGATACGTGAGCTGTATGAGACATTTCGCAACTTCAGAATCCGTATCGCGGATTATGTACGCTACAGAAAGATAACTTCCAACATGAATGAAAGATTTCCAGATGCCACAGCAGATGAGCTCAATGCGAGTGATGCTACATGTATTATTTGCCGTGAGGAGATGACCACAGCAAAAAAGCTGCTTTGTGGGCACCTGTTCCATGTCCATTGTTTGAGGTCATGGTTAGAACGCCAACACACTTGCCCTACATGTAGAGCTCCAATTCTGCCCCCAGATAATGGGCGTACTGCAGCACGTCCGCATGGAGTTCATCCTGGAGTTCAGCCTGTTCCAGGTAATGGCACACCAGGTTCAGAACGAGCAGCAGGTGAGAACATAAGCAGGCGCCAAGCAAAACTTGAAGCAGCTGCTTCGGCTGCTTCCCTATATGGGAGATCCTTTGCTTATCCTCCAGCGAACAATTTGAACAGGTATTCAACTCCTCCACAGTCTACATCAAATGGTCCACAATCAGGAGAAGCAAGTACTTCCAATCAATCGCCAAAAGGCCATGCAACTGCCGATCCTTCAGCGCCTACTTTTTATGCACGTGGTGCTGTTAGTTCAGTGACAACTACCAGGGAACTTGAAAGTTCACTGCAGAAGGCATATGAAAATGCTATAAAGAGCCAGATAGAGATGTTGCAAATCCAGCTGCAAATGTTTCAGCATGGGGCTACTTCATCAGCGACTAACAATGAAAACGGTGAGCACACAAAAAGCGACTGAAGTTGTAAATAAGGGGAAGGTGAGGGCTGAACAAACAAAGGATATATAGATGGTGACTTGGCAAATACCCGAGGAGAAACTCCCATGCCATGCTTTATTTCGATTTTGGTAGGCTCGTTCATTTGTATGTCCATGTTAGAGGCCTCCTATCAACATCAGATATTTATTTGCTTAATGTGGTCATTTGAGTAGAGATGCAGTGTTGTAACTACGACTAATTTCAGATTAGCACATCTGGGAAAAAGCAACATGATTCTTCAATCTGAACCATCAGTATGCTCCCTCTTTTTTCTGGCATTTTTGTTTGTACGCTATAGTTGGATTTATACTGTCCAGACATTCAATACTGAATTTAATAAATGTGAATATGGTTTAAGTCGCTCTTCTGAATT
CDS Sequence
- >LOC_Os06g19680.1
ATGATTCGGCTGCAGACGTACGCGGCGTTCAGCCTGATGGCGACGGCGACGGCGGTGTACTACGCGTTCAGCAGCAGGGAGCAGTTCTACCCGGCGATGGTGTACCTCTCCACCTCCAAGATCTGCTTCGTGCTGCTCCTCAACACGGGCCTCGTCGCCATGTGCGTCGCCTGGCAGCTCGTCAAGCGGCTCTTCCTGGGGACGCTCCGGGAGGCCGAGGTGGAGCGGCTCAACGAGCAGGCGTGGCGGGAGGTGGTGGAGATCCTCTTCGCGGTCACCATCTTCAGGCAGGACTTCTCCGTCTCCTTCCTCGCCATGGTCGCCGCGCTGCTGCTCGTCAAGGCGCTGCACTGGCTCGCGCAGAAGAGGGTCGAGTACATCGAGACCACGCCCTCCGTGCCCATGCTGTCGCACGCCAGGATCGTCTCCTTCATGCTGTTCCTGCTCGTCGTCGACTGCCTCTTCCTGTCCAACTCGCTCAGGTCGCTCATACACAAGCGGGAGGCGTCTGTTGCAATCTTCTTTTCGTTTGAGTACATGATACTAGCAACATCCACAGTATCGACATTCGTGAAATATATATTCTATGTCAGTGACATGCTAATGGAAGGTCAATGGGAGAAAAAGGCAGTGTATACATTTTACTTGGAGCTCATCAGTGACCTTGTACACTTGTCTTTGTATATGCTCTTCTTCATAGCTATCTTCCTGAACTATGGTGTCCCACTGCACTTGATACGTGAGCTGTATGAGACATTTCGCAACTTCAGAATCCGTATCGCGGATTATGTACGCTACAGAAAGATAACTTCCAACATGAATGAAAGATTTCCAGATGCCACAGCAGATGAGCTCAATGCGAGTGATGCTACATGTATTATTTGCCGTGAGGAGATGACCACAGCAAAAAAGCTGCTTTGTGGGCACCTGTTCCATGTCCATTGTTTGAGGTCATGGTTAGAACGCCAACACACTTGCCCTACATGTAGAGCTCCAATTCTGCCCCCAGATAATGGGCGTACTGCAGCACGTCCGCATGGAGTTCATCCTGGAGTTCAGCCTGTTCCAGGTAATGGCACACCAGGTTCAGAACGAGCAGCAGGTGAGAACATAAGCAGGCGCCAAGCAAAACTTGAAGCAGCTGCTTCGGCTGCTTCCCTATATGGGAGATCCTTTGCTTATCCTCCAGCGAACAATTTGAACAGGTATTCAACTCCTCCACAGTCTACATCAAATGGTCCACAATCAGGAGAAGCAAGTACTTCCAATCAATCGCCAAAAGGCCATGCAACTGCCGATCCTTCAGCGCCTACTTTTTATGCACGTGGTGCTGTTAGTTCAGTGACAACTACCAGGGAACTTGAAAGTTCACTGCAGAAGGCATATGAAAATGCTATAAAGAGCCAGATAGAGATGTTGCAAATCCAGCTGCAAATGTTTCAGCATGGGGCTACTTCATCAGCGACTAACAATGAAAACGGTGAGCACACAAAAAGCGACTGA - >LOC_Os06g19680.2
ATGATTCGGCTGCAGACGTACGCGGCGTTCAGCCTGATGGCGACGGCGACGGCGGTGTACTACGCGTTCAGCAGCAGGGAGCAGTTCTACCCGGCGATGGTGTACCTCTCCACCTCCAAGATCTGCTTCGTGCTGCTCCTCAACACGGGCCTCGTCGCCATGTGCGTCGCCTGGCAGCTCGTCAAGCGGCTCTTCCTGGGGACGCTCCGGGAGGCCGAGGTGGAGCGGCTCAACGAGCAGGCGTGGCGGGAGGTGGTGGAGATCCTCTTCGCGGTCACCATCTTCAGGCAGGACTTCTCCGTCTCCTTCCTCGCCATGGTCGCCGCGCTGCTGCTCGTCAAGGCGCTGCACTGGCTCGCGCAGAAGAGGGTCGAGTACATCGAGACCACGCCCTCCGTGCCCATGCTGTCGCACGCCAGGATCGTCTCCTTCATGCTGTTCCTGCTCGTCGTCGACTGCCTCTTCCTGTCCAACTCGCTCAGGTCGCTCATACACAAGCGGGAGGCGTCTGTTGCAATCTTCTTTTCGTTTGAGTACATGATACTAGCAACATCCACAGTATCGACATTCGTGAAATATATATTCTATGTCAGTGACATGCTAATGGAAGGTCAATGGGAGAAAAAGGCAGTGTATACATTTTACTTGGAGCTCATCAGTGACCTTGTACACTTGTCTTTGTATATGCTCTTCTTCATAGCTATCTTCCTGAACTATGGTGTCCCACTGCACTTGATACGTGAGCTGTATGAGACATTTCGCAACTTCAGAATCCGTATCGCGGATTATGTACGCTACAGAAAGATAACTTCCAACATGAATGAAAGATTTCCAGATGCCACAGCAGATGAGCTCAATGCGAGTGATGCTACATGTATTATTTGCCGTGAGGAGATGACCACAGCAAAAAAGCTGCTTTGTGGGCACCTGTTCCATGTCCATTGTTTGAGGTCATGGTTAGAACGCCAACACACTTGCCCTACATGTAGAGCTCCAATTCTGCCCCCAGATAATGGGCGTACTGCAGCACGTCCGCATGGAGTTCATCCTGGAGTTCAGCCTGTTCCAGGTAATGGCACACCAGGTTCAGAACGAGCAGCAGGTGAGAACATAAGCAGGCGCCAAGCAAAACTTGAAGCAGCTGCTTCGGCTGCTTCCCTATATGGGAGATCCTTTGCTTATCCTCCAGCGAACAATTTGAACAGGTATTCAACTCCTCCACAGTCTACATCAAATGGTCCACAATCAGGAGAAGCAAGTACTTCCAATCAATCGCCAAAAGGCCATGCAACTGCCGATCCTTCAGCGCCTACTTTTTATGCACGTGGTGCTGTTAGTTCAGTGACAACTACCAGGGAACTTGAAAGTTCACTGCAGAAGGCATATGAAAATGCTATAAAGAGCCAGATAGAGATGTTGCAAATCCAGCTGCAAATGTTTCAGCATGGGGCTACTTCATCAGCGACTAACAATGAAAACGGTGAGCACACAAAAAGCGACTGA
Protein Sequence
- >LOC_Os06g19680.1
MIRLQTYAAFSLMATATAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQLVKRLFLGTLREAEVERLNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLAQKRVEYIETTPSVPMLSHARIVSFMLFLLVVDCLFLSNSLRSLIHKREASVAIFFSFEYMILATSTVSTFVKYIFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYGVPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATADELNASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPILPPDNGRTAARPHGVHPGVQPVPGNGTPGSERAAGENISRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGPQSGEASTSNQSPKGHATADPSAPTFYARGAVSSVTTTRELESSLQKAYENAIKSQIEMLQIQLQMFQHGATSSATNNENGEHTKSD* - >LOC_Os06g19680.2
MIRLQTYAAFSLMATATAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQLVKRLFLGTLREAEVERLNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLAQKRVEYIETTPSVPMLSHARIVSFMLFLLVVDCLFLSNSLRSLIHKREASVAIFFSFEYMILATSTVSTFVKYIFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYGVPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATADELNASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPILPPDNGRTAARPHGVHPGVQPVPGNGTPGSERAAGENISRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGPQSGEASTSNQSPKGHATADPSAPTFYARGAVSSVTTTRELESSLQKAYENAIKSQIEMLQIQLQMFQHGATSSATNNENGEHTKSD*