Information report for OsCLF;SDG711
Gene Details
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Functional Descriptions
- NA.
- The expression of SDG711 and SDG718 is induced by LD and SD, respectively.
- OsFIE1 specifically expressed in endosperm, and mRNA of OsFIE1 also enriched in inner seed coat with the corresponding PcG members of OsiEZ1 and OsCLF.
- Reduced cell expansion and cell division of stem caused significant reduction of stem length during mature period of OsEMF2b, OsFIE2 and OsCLF RNAi transgenic plants.
- To determine how PcG genes regulate plant height, we investigated the phenotypes of the emf2b mutant and OsEMF2b, OsFIE2 and OsCLF RNAi transgenic plants; they all exhibited dwarf phenotype.
- Therefore, we speculated that these PcG genes, OsFIE2, OsCLF and OsEMF2b, may work as a PRC2 to regulate rice height.
- SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other HistoneModifications.
- SDG711 is a histone H3K27me2/3 transmethylase in rice, a homolog of CLF in Arabidopsis, and plays key roles in regulating flowering time and panicle development.
- In this work, we investigated the role of SDG711 in rice seed development.
- Overexpression and downregulation of SDG711 lead to a decrease and increase in the expression level of genes related to starch accumulation, resulting in smaller seeds or even seed abortion.
- ChIP assay showed that SDG711-mediated H3K27me3 changed significantly in genes related to endosperm development, and SDG711 can directly bind to the gene body region of several starch synthesis genes and amylase genes.
Functional Keywords
- histone-trimethylation , seed , stem , cell-division , dwarf , height , plant-height , development , panicle , starch , endosperm , flowering-time , seed-development , endosperm-development , flowering
Literature and News
- Expression, imprinting, and evolution of rice homologs of the polycomb group genes . DOI: 10.1093/mp/ssp036 ; PMID: 19825651
- Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice . DOI: 10.1038/srep13251 ; PMID: 26285801
- Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3 . DOI: 10.1111/tpj.13202 ; PMID: 27133784
- Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF . DOI: 10.1016/j.plantsci.2017.11.007 ; PMID: 29362094
- Transcriptional and post-transcriptional regulation of heading date in rice . DOI: 10.1111/nph.17158 ; PMID: 33341945
- SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications . DOI: 10.1186/s12284-021-00467-y ; PMID: 33666740
Gene Resources
- UniProt: Q5VN06
- EMBL: AP003044, AP005813, AP008212
- AlphaFoldDB: Q5VN06
- EnsemblPlants: Os06t0275500-01
- Gramene: Os06t0275500-01
- KEGG: dosa:Os06g0275500, osa:4340748
- Orthologous matrix: RKEECVD
- InterPro: IPR001214, IPR025778, IPR026489
Sequences
cDNA Sequence
- >LOC_Os06g16390.1
CTTCCCTTTCCTCCACCCACGCCGCGACGACGAGTCGCCGCCGCGGCCTCGCCGGCGACCAGGTCTCCGGCGGCCCCGCCGCCCGCCGTGACGGGGCTCCGGCCTTCCGCCCTCCTCCCCGCACCGCCCGCTATCTCGGCTCCCCGACTCCTGCATTCCCCCGACTCTCCCCCGGCCGCCGCCGCCGCCATTTCTGACTCTTTCTCCGCGGCGCGTCTCTCCTCCGAGAGCACGCCGACCGCCTCCCGAAGCGGCGTCGCGGCCGCGGCGGCCGCCGCCTTCTCCCGCCCCTGATGGCTGGCGATTCCCGAAATGAGCCGATGTTTTGCGAGGAAGGGAGCAGTGAATCGGGCTATGTTCTATGTGTTATTGATTCGCTGAAGAAGAAAATCACATCGGACCGCTTTGTTTACATCCAGAAAAGGGTAGAGGAGAATAGCATTAAGCTTAGCCCGATTACACTGCACTCTCACAATTTGTCAAAAAATAGGCAAACTAGTACATCCAACAGTACAGATTTAGTCTCGAATTTGCTCACAAAGAGGAAAGAAGATGCCCTGTGTGCTGTGAATAGTCGTGAGTCATCTCCTGATGAAAGTGAAGGTGCCAATTGCCAAGATGAGTGTTCATCGACTGTTATTGTGGGTGGAAATCTATCCGCGAGGAATTCTGTCCGTCCGATTAGACTACCAGAAGTGGCAACACTCCCTCCATATACAACTTGGATATTTTTGGACAGGAACCAGCGGATGCAAGAAGACCAATCTGTACTTGGTCGTCGAAGGATTTACTATGATACAAACTGTGGCGAAGCTTTAATTTGCAGTGATAGTGAAGATGAAGCTGTTGAGGACGAGGAAGAGAAAAAGGAGTTCAAGGATTCTGAAGATTGCATAATTCGGATGACCATTCAAGAATGTGGCATGTCTGATGCTGTGCTTGAAACTCTAGCTCGAGATATCGAAAGGGCTCCTGATGATATAAAGGCCAGGTATGAGATCCTACAAGGGGAGAAACCTGAGGGTTCTTCCAAGAAAGTGTCTGAACTTAATGTCAAAATGGAAGACGTGTACGGTGATAAAGATCTGGATGCAGCATTGGATTCCTTTGACAATCTCTTTTGTCGCCGATGTTTGGTTTTTGATTGCAAGCTACATGGGTGTTCTCAAGATTTAGTATTTCCGACTGAAAAGCAGGCACCATTGTGCAGCTCGGATGAGGGTACACCATGTGGTATTCACTGTTACAAACTGGTCTCTAAACCAGATGCTATCATGGAGATTGATTCTCATTTGCTTGTTGATGTTGAGGAGCCAACATCGGACAATCTAAAGGATCAGATAGGGTCAAATAAGAAAAAGCTTGGTTCTAGTGGGCAGAAAACAAAATCTCAACAAAGTGAAAGTTCTTCAACTGCAAGGGTTTCCTCAGAAAGCAGTGAGTCTGAAGTACAACTGTTAAGCAATAAATCCCCGCAACACTCTCCTGGCCTCTCAAAAAATAAGCTTGGCGCAAAAGGTGGAATCAAGAAAAGTACTAACAGAAGAATTGCTGAGAGAATTCTAATGAGTGTGAAAAAGGGGCAACAGGAAATGTCACCGGACTCTAATTCTATTGTTAATGGATGCCATTGGCCTAGGGATATGAAGCTTAGATCTGATACTAGGAGTGGAATTAAGGATTCTGTTGTATCCTCACAGTGTAATTCTCCAAGCACAAGGAGTTTTAGAAAGAAGGGCACACTTCAAATGGAGAATAACTCATCTTTTGTGGATGCTCAGAGTGATTCAATGGAGGATACAAATAATGAACATTCAGCAACAGATGGTTGTGATAGTTCAAGGAAAGAGGAATGTGTTGATGAGAGTATATGCAGGCAAGAAGCTCATGGCAGGTCCTGGAAAGTGATTGAGCAAGGGCTTCTATTGAAAGGATTAGAGATTTTTGGAAAGAACAGTTGTTTAATTGCTCGGAACCTTCTGGGTGGGATGAAAACATGCACAGATGTTTTTCAGTATATGAATTACATTGAAAACAGCAGTGCATCTGGAGCTCTTAGTGGTGTTGATTCTCTTGTTAAAGGATATATGAAGGGTAATGAATTACGGACAAGATCAAGATTTGTGAGAAGGCGAGGAAGGGTCCGCCGTTTGAAGTACACCTGGAAAACTGCAGGCTACCATTTTATAAGGAAAAGGATTACAGAAAGGAAGGATCAGCCTTGTCGACAATACACTCCTTGTGGTTGCCAGTCTGCATGTGGGAAGCAATGTCCATGTCTCACAAATGGTACCTGCTGTGAGAAATACTGTGGGTGCCCGAAAATGTGCAAGAATCGCTTCCGAGGTTGCCATTGCGCAAAGAGTCAGTGTCGCAGCCGGCAGTGTCCATGCTTTGCTGCTGACAGGGAATGTGATCCTGATGTGTGTAGAAACTGCTGGGTAGGGTGCGGTGATGGTACATTGGGAGTCCCTAACCAAAGAGGTGATAATTATGAATGCCGGAACATGAAACTGCTGCTTAAACAGCAACAAAGGGTCTTACTTGGGAGATCTGATGTTTCTGGCTGGGGAGCTTTCCTCAAGAATAGTGTTGGGAAGCACGAGTATCTTGGCGAGTACACTGGGGAGCTTATCTCCCATAAAGAAGCTGACAAGCGTGGAAAGATATATGACCGTGAGAATTCATCGTTCCTTTTCAACTTGAACAATGAGTACGTTCTTGATGCCTACAGAATGGGCGACAAGCTGAAGTTCGCCAACCATTCCCCTGATCCAAACTGCTACGCCAAGGTCATCATGGTAGCAGGCGATCACAGGGTGGGGATCTTCGCCAAAGAGCGGATCAGCGCGGGCGAGGAGCTGTTCTACGACTACCGCTACGAGCCCGACCGGGCCCCGGCGTGGGCTCGCAAGCCCGAGGGGCCCGGTGCCAAGGACGACGCCCAGCCTTCCACCGGGAGAGCAAAGAAGCTCGCCCACTGAAGAAGAAGAAGAAGAAGAAGATCAGCCGTTGATTCTTTTGTTGTCTTGGTTGATTCTTTCGTTATTGGTGAGGGGGACCGAGAACTCTGACGGTGATTAGCGCCGTAAGGAAAACTTTCCTGCCATTCGTTGGCCCCCTCGATTCGATTCGTTGATTTTCCCTGAATTCTGTAACTGCTGCACCTGTCGCCAGTTCAACTTCAAAAGATTTTTCTGATTCTGGATCAGTTGTTGTGTTCTTATGTGTTACTTTTCGAAAATACAATCACCATCTAAAATGCATGCATGACAC
CDS Sequence
- >LOC_Os06g16390.1
ATGGCTGGCGATTCCCGAAATGAGCCGATGTTTTGCGAGGAAGGGAGCAGTGAATCGGGCTATGTTCTATGTGTTATTGATTCGCTGAAGAAGAAAATCACATCGGACCGCTTTGTTTACATCCAGAAAAGGGTAGAGGAGAATAGCATTAAGCTTAGCCCGATTACACTGCACTCTCACAATTTGTCAAAAAATAGGCAAACTAGTACATCCAACAGTACAGATTTAGTCTCGAATTTGCTCACAAAGAGGAAAGAAGATGCCCTGTGTGCTGTGAATAGTCGTGAGTCATCTCCTGATGAAAGTGAAGGTGCCAATTGCCAAGATGAGTGTTCATCGACTGTTATTGTGGGTGGAAATCTATCCGCGAGGAATTCTGTCCGTCCGATTAGACTACCAGAAGTGGCAACACTCCCTCCATATACAACTTGGATATTTTTGGACAGGAACCAGCGGATGCAAGAAGACCAATCTGTACTTGGTCGTCGAAGGATTTACTATGATACAAACTGTGGCGAAGCTTTAATTTGCAGTGATAGTGAAGATGAAGCTGTTGAGGACGAGGAAGAGAAAAAGGAGTTCAAGGATTCTGAAGATTGCATAATTCGGATGACCATTCAAGAATGTGGCATGTCTGATGCTGTGCTTGAAACTCTAGCTCGAGATATCGAAAGGGCTCCTGATGATATAAAGGCCAGGTATGAGATCCTACAAGGGGAGAAACCTGAGGGTTCTTCCAAGAAAGTGTCTGAACTTAATGTCAAAATGGAAGACGTGTACGGTGATAAAGATCTGGATGCAGCATTGGATTCCTTTGACAATCTCTTTTGTCGCCGATGTTTGGTTTTTGATTGCAAGCTACATGGGTGTTCTCAAGATTTAGTATTTCCGACTGAAAAGCAGGCACCATTGTGCAGCTCGGATGAGGGTACACCATGTGGTATTCACTGTTACAAACTGGTCTCTAAACCAGATGCTATCATGGAGATTGATTCTCATTTGCTTGTTGATGTTGAGGAGCCAACATCGGACAATCTAAAGGATCAGATAGGGTCAAATAAGAAAAAGCTTGGTTCTAGTGGGCAGAAAACAAAATCTCAACAAAGTGAAAGTTCTTCAACTGCAAGGGTTTCCTCAGAAAGCAGTGAGTCTGAAGTACAACTGTTAAGCAATAAATCCCCGCAACACTCTCCTGGCCTCTCAAAAAATAAGCTTGGCGCAAAAGGTGGAATCAAGAAAAGTACTAACAGAAGAATTGCTGAGAGAATTCTAATGAGTGTGAAAAAGGGGCAACAGGAAATGTCACCGGACTCTAATTCTATTGTTAATGGATGCCATTGGCCTAGGGATATGAAGCTTAGATCTGATACTAGGAGTGGAATTAAGGATTCTGTTGTATCCTCACAGTGTAATTCTCCAAGCACAAGGAGTTTTAGAAAGAAGGGCACACTTCAAATGGAGAATAACTCATCTTTTGTGGATGCTCAGAGTGATTCAATGGAGGATACAAATAATGAACATTCAGCAACAGATGGTTGTGATAGTTCAAGGAAAGAGGAATGTGTTGATGAGAGTATATGCAGGCAAGAAGCTCATGGCAGGTCCTGGAAAGTGATTGAGCAAGGGCTTCTATTGAAAGGATTAGAGATTTTTGGAAAGAACAGTTGTTTAATTGCTCGGAACCTTCTGGGTGGGATGAAAACATGCACAGATGTTTTTCAGTATATGAATTACATTGAAAACAGCAGTGCATCTGGAGCTCTTAGTGGTGTTGATTCTCTTGTTAAAGGATATATGAAGGGTAATGAATTACGGACAAGATCAAGATTTGTGAGAAGGCGAGGAAGGGTCCGCCGTTTGAAGTACACCTGGAAAACTGCAGGCTACCATTTTATAAGGAAAAGGATTACAGAAAGGAAGGATCAGCCTTGTCGACAATACACTCCTTGTGGTTGCCAGTCTGCATGTGGGAAGCAATGTCCATGTCTCACAAATGGTACCTGCTGTGAGAAATACTGTGGGTGCCCGAAAATGTGCAAGAATCGCTTCCGAGGTTGCCATTGCGCAAAGAGTCAGTGTCGCAGCCGGCAGTGTCCATGCTTTGCTGCTGACAGGGAATGTGATCCTGATGTGTGTAGAAACTGCTGGGTAGGGTGCGGTGATGGTACATTGGGAGTCCCTAACCAAAGAGGTGATAATTATGAATGCCGGAACATGAAACTGCTGCTTAAACAGCAACAAAGGGTCTTACTTGGGAGATCTGATGTTTCTGGCTGGGGAGCTTTCCTCAAGAATAGTGTTGGGAAGCACGAGTATCTTGGCGAGTACACTGGGGAGCTTATCTCCCATAAAGAAGCTGACAAGCGTGGAAAGATATATGACCGTGAGAATTCATCGTTCCTTTTCAACTTGAACAATGAGTACGTTCTTGATGCCTACAGAATGGGCGACAAGCTGAAGTTCGCCAACCATTCCCCTGATCCAAACTGCTACGCCAAGGTCATCATGGTAGCAGGCGATCACAGGGTGGGGATCTTCGCCAAAGAGCGGATCAGCGCGGGCGAGGAGCTGTTCTACGACTACCGCTACGAGCCCGACCGGGCCCCGGCGTGGGCTCGCAAGCCCGAGGGGCCCGGTGCCAAGGACGACGCCCAGCCTTCCACCGGGAGAGCAAAGAAGCTCGCCCACTGA
Protein Sequence
- >LOC_Os06g16390.1
MAGDSRNEPMFCEEGSSESGYVLCVIDSLKKKITSDRFVYIQKRVEENSIKLSPITLHSHNLSKNRQTSTSNSTDLVSNLLTKRKEDALCAVNSRESSPDESEGANCQDECSSTVIVGGNLSARNSVRPIRLPEVATLPPYTTWIFLDRNQRMQEDQSVLGRRRIYYDTNCGEALICSDSEDEAVEDEEEKKEFKDSEDCIIRMTIQECGMSDAVLETLARDIERAPDDIKARYEILQGEKPEGSSKKVSELNVKMEDVYGDKDLDAALDSFDNLFCRRCLVFDCKLHGCSQDLVFPTEKQAPLCSSDEGTPCGIHCYKLVSKPDAIMEIDSHLLVDVEEPTSDNLKDQIGSNKKKLGSSGQKTKSQQSESSSTARVSSESSESEVQLLSNKSPQHSPGLSKNKLGAKGGIKKSTNRRIAERILMSVKKGQQEMSPDSNSIVNGCHWPRDMKLRSDTRSGIKDSVVSSQCNSPSTRSFRKKGTLQMENNSSFVDAQSDSMEDTNNEHSATDGCDSSRKEECVDESICRQEAHGRSWKVIEQGLLLKGLEIFGKNSCLIARNLLGGMKTCTDVFQYMNYIENSSASGALSGVDSLVKGYMKGNELRTRSRFVRRRGRVRRLKYTWKTAGYHFIRKRITERKDQPCRQYTPCGCQSACGKQCPCLTNGTCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVGCGDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHKEADKRGKIYDRENSSFLFNLNNEYVLDAYRMGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEGPGAKDDAQPSTGRAKKLAH*