Gene Details:
- MSU gene ID: LOC_Os06g15330
- RAPdb gene ID: Os06g0264200
- Gene Symbol: OsCOL16
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- OsCOL16 expression exhibits a diurnal oscillation and serves as a transcription factor with transcriptional activation activity.
- We determined that OsCOL16 up-regulates the expression of the floral repressor Ghd7, leading to down-regulation of the expression of Ehd1, Hd3a, and RFT1.
- Moreover, genetic diversity and evolutionary analyses suggest that remarkable differences in flowering times correlate with two major alleles of OsCOL16.
Function-related keywords:
Literature:
- OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice . DOI: 10.1016/j.plantsci.2017.04.004 ; PMID: 28554475
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g15330.1
GTGTTCGTCCAGCCGCGACACGACACGACACGGGGACTGAAGGAGGAAGAAGAAGAGGAGTGGTAGATGAGCAGCACGGCGAAGGCGGCGGCCGCCGGGGCGGTGGGTGCCAAGTCGGCGCGGGCGTGCGACGGCTGCCTGCGCCGGCGGGCGAGGTGGTACTGCGCGGCGGACGACGCGTTCCTGTGCCAGGGGTGCGACACGTCGGTGCACTCCGCGAACCCGCTCGCGCGGCGCCACGAGCGGCTGCGGCTGCGGCCGTCGTCGCCGCCGCCGCTGGTGCCGCCGTCGGGGTCGGGGCGGCGCGACGAGGCCGTCCCCGCGGCGTGGTTCAAGCGCAAGGCGCGGACCCCGCGGTCGCACGCCGCCAAGAGCGCCGCCGCCTTCGGGCAGCTGCTGTCGAGGCGGCTCGTCGTCGTTCCCGAGGCGGCGGCTGGTAGTGGAGGGGACTCGCCGGAGGAGCGGAAGGACGAGGGGGAGATCGTGGAGGAGCAGGAGCAGCTGCTGTACCGCGTCCCCATCTTTGACCCGGCCCTCTCGGAGTTCTGCTCGCCGCCTCCCCTCGAGGACGCGGCGGCCGCCGTGTCCTGCTGCAATGAGGACGGCGCCGTCGAGAACCCGACGAAGCCGTCCATGACGACGACGACGGCTACAACGCCACCGCTCCAGTTCTTCCCCGACGGCCAAGCCAATTTCGGGCCGACCGACGCCGAGCTGAGGGAGTTCGCCGCCGACATGGAGGCCCTCCTCGGGCGTGGCCTGGACGACGGCAACGACGAGGACTCCTTCTGCATGGAGACGCTGGGGCTCATCGAGCCGGTGGACGACGACGCCGGGCGGGTCAAGGTGGAGGCCGACGGCGACGCCGGGATGACCCTAGCGTGGTGCCACGAGCTGGACACGGAGACATCGTCCGGCGAGATGCTGGACATCGACTTCGACTGCGGCTCACCTCAGGCGGCGACGACACCCGACGAGAAGGTCGGGAGCAGCGGGCCCGCCGCCGCCGACGACGACGCGCAGCTCCAGCAGAGCAACCTCGCCCTCAGCCTCAACTACGAGGCCATCATCGAGAGCTGGGGGACCTCGCCGTGGACCGACGGCGAGCGGCCGCACGTCAAGCTCGACGACTCCTGGCCCCGCGATTACTCGGGGGTGTGGATGGCGGCGGCAGGGGTGTTCGGGCACGGCGGCGAGGAGCAGGCGCTGACGCCGAGGCTGGGGATGGACGGCGGCAGGGAGGCGCGGGTGTCGAGGTACAGGGAGAAGCGGCGGACGCGGCTCTTCTCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGCCGCTTCGTCAAGCGCGCCGCCGCCGCCGCCACCGCCGCCGTCGCCACGGCGTGCGTCGCGTAGCGCTGCATGGCGGAAGTTTGATCTGCCGGCCGCGCGCTCGCCATGAAATCACACAAGAACAAAACAACTCGTCGAAACTGCATTAGTTTTAGCTGGTTTCTTTTACGGTCACACATGCGTCTTCTTTTTCCATCAGTTCACCATTGATGGTTGCTAAGGATCCAAGGACTTTTAATAATAATTATTACTATAATAATAATGATAATACTAAAAAGTGAATTGTACTATTTGTTGAGAGGTATACAGTACCCCTGCGCTCAATTGCTGAAAGTTTTGAAAGTTTTTTTCCTCCCTTCAGATTCAGGGGGTTGGTTGACAGTAGTAGCCTGTAGCTGTGCTGTATGCATATATGTCCATTGGTTGTCCTGCACGGGTACAGTTCGAGGCCAGGAGATATACATGTAAATCAATCAATCAATATATACAACTAATTGATTCAGTGATGACCTCATATGTTTGTTGAGTTGAATAGAAGTTCTTTCACTTTCTCCCAACTTTAAATTTTGAAAGGGGGATAAATTATTGTATGTATTCAGGATTGCAAAATACAAACTTTATTGGTAATCAGTTTTTGCTGAGGTATTTGTTCGAATAAAGTTATGGAATT
CDS Sequence
- >LOC_Os06g15330.1
ATGAGCAGCACGGCGAAGGCGGCGGCCGCCGGGGCGGTGGGTGCCAAGTCGGCGCGGGCGTGCGACGGCTGCCTGCGCCGGCGGGCGAGGTGGTACTGCGCGGCGGACGACGCGTTCCTGTGCCAGGGGTGCGACACGTCGGTGCACTCCGCGAACCCGCTCGCGCGGCGCCACGAGCGGCTGCGGCTGCGGCCGTCGTCGCCGCCGCCGCTGGTGCCGCCGTCGGGGTCGGGGCGGCGCGACGAGGCCGTCCCCGCGGCGTGGTTCAAGCGCAAGGCGCGGACCCCGCGGTCGCACGCCGCCAAGAGCGCCGCCGCCTTCGGGCAGCTGCTGTCGAGGCGGCTCGTCGTCGTTCCCGAGGCGGCGGCTGGTAGTGGAGGGGACTCGCCGGAGGAGCGGAAGGACGAGGGGGAGATCGTGGAGGAGCAGGAGCAGCTGCTGTACCGCGTCCCCATCTTTGACCCGGCCCTCTCGGAGTTCTGCTCGCCGCCTCCCCTCGAGGACGCGGCGGCCGCCGTGTCCTGCTGCAATGAGGACGGCGCCGTCGAGAACCCGACGAAGCCGTCCATGACGACGACGACGGCTACAACGCCACCGCTCCAGTTCTTCCCCGACGGCCAAGCCAATTTCGGGCCGACCGACGCCGAGCTGAGGGAGTTCGCCGCCGACATGGAGGCCCTCCTCGGGCGTGGCCTGGACGACGGCAACGACGAGGACTCCTTCTGCATGGAGACGCTGGGGCTCATCGAGCCGGTGGACGACGACGCCGGGCGGGTCAAGGTGGAGGCCGACGGCGACGCCGGGATGACCCTAGCGTGGTGCCACGAGCTGGACACGGAGACATCGTCCGGCGAGATGCTGGACATCGACTTCGACTGCGGCTCACCTCAGGCGGCGACGACACCCGACGAGAAGGTCGGGAGCAGCGGGCCCGCCGCCGCCGACGACGACGCGCAGCTCCAGCAGAGCAACCTCGCCCTCAGCCTCAACTACGAGGCCATCATCGAGAGCTGGGGGACCTCGCCGTGGACCGACGGCGAGCGGCCGCACGTCAAGCTCGACGACTCCTGGCCCCGCGATTACTCGGGGGTGTGGATGGCGGCGGCAGGGGTGTTCGGGCACGGCGGCGAGGAGCAGGCGCTGACGCCGAGGCTGGGGATGGACGGCGGCAGGGAGGCGCGGGTGTCGAGGTACAGGGAGAAGCGGCGGACGCGGCTCTTCTCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGCCGCTTCGTCAAGCGCGCCGCCGCCGCCGCCACCGCCGCCGTCGCCACGGCGTGCGTCGCGTAG
Protein Sequence
- >LOC_Os06g15330.1
MSSTAKAAAAGAVGAKSARACDGCLRRRARWYCAADDAFLCQGCDTSVHSANPLARRHERLRLRPSSPPPLVPPSGSGRRDEAVPAAWFKRKARTPRSHAAKSAAAFGQLLSRRLVVVPEAAAGSGGDSPEERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDGAVENPTKPSMTTTTATTPPLQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDSFCMETLGLIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAATTPDEKVGSSGPAAADDDAQLQQSNLALSLNYEAIIESWGTSPWTDGERPHVKLDDSWPRDYSGVWMAAAGVFGHGGEEQALTPRLGMDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAAAAATAAVATACVA*