Information report for OsCOL16
Gene Details
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Functional Descriptions
- OsCOL16 expression exhibits a diurnal oscillation and serves as a transcription factor with transcriptional activation activity.
- We determined that OsCOL16 up-regulates the expression of the floral repressor Ghd7, leading to down-regulation of the expression of Ehd1, Hd3a, and RFT1.
- Moreover, genetic diversity and evolutionary analyses suggest that remarkable differences in flowering times correlate with two major alleles of OsCOL16.
Functional Keywords
Literature and News
Gene Resources
- UniProt: A3BAG5
- EMBL: CM000143
- AlphaFoldDB: A3BAG5
- EnsemblPlants: Os06t0264200-01
- Gramene: Os06t0264200-01
- KEGG: osa:4340698
Sequences
cDNA Sequence
- >LOC_Os06g15330.1
GTGTTCGTCCAGCCGCGACACGACACGACACGGGGACTGAAGGAGGAAGAAGAAGAGGAGTGGTAGATGAGCAGCACGGCGAAGGCGGCGGCCGCCGGGGCGGTGGGTGCCAAGTCGGCGCGGGCGTGCGACGGCTGCCTGCGCCGGCGGGCGAGGTGGTACTGCGCGGCGGACGACGCGTTCCTGTGCCAGGGGTGCGACACGTCGGTGCACTCCGCGAACCCGCTCGCGCGGCGCCACGAGCGGCTGCGGCTGCGGCCGTCGTCGCCGCCGCCGCTGGTGCCGCCGTCGGGGTCGGGGCGGCGCGACGAGGCCGTCCCCGCGGCGTGGTTCAAGCGCAAGGCGCGGACCCCGCGGTCGCACGCCGCCAAGAGCGCCGCCGCCTTCGGGCAGCTGCTGTCGAGGCGGCTCGTCGTCGTTCCCGAGGCGGCGGCTGGTAGTGGAGGGGACTCGCCGGAGGAGCGGAAGGACGAGGGGGAGATCGTGGAGGAGCAGGAGCAGCTGCTGTACCGCGTCCCCATCTTTGACCCGGCCCTCTCGGAGTTCTGCTCGCCGCCTCCCCTCGAGGACGCGGCGGCCGCCGTGTCCTGCTGCAATGAGGACGGCGCCGTCGAGAACCCGACGAAGCCGTCCATGACGACGACGACGGCTACAACGCCACCGCTCCAGTTCTTCCCCGACGGCCAAGCCAATTTCGGGCCGACCGACGCCGAGCTGAGGGAGTTCGCCGCCGACATGGAGGCCCTCCTCGGGCGTGGCCTGGACGACGGCAACGACGAGGACTCCTTCTGCATGGAGACGCTGGGGCTCATCGAGCCGGTGGACGACGACGCCGGGCGGGTCAAGGTGGAGGCCGACGGCGACGCCGGGATGACCCTAGCGTGGTGCCACGAGCTGGACACGGAGACATCGTCCGGCGAGATGCTGGACATCGACTTCGACTGCGGCTCACCTCAGGCGGCGACGACACCCGACGAGAAGGTCGGGAGCAGCGGGCCCGCCGCCGCCGACGACGACGCGCAGCTCCAGCAGAGCAACCTCGCCCTCAGCCTCAACTACGAGGCCATCATCGAGAGCTGGGGGACCTCGCCGTGGACCGACGGCGAGCGGCCGCACGTCAAGCTCGACGACTCCTGGCCCCGCGATTACTCGGGGGTGTGGATGGCGGCGGCAGGGGTGTTCGGGCACGGCGGCGAGGAGCAGGCGCTGACGCCGAGGCTGGGGATGGACGGCGGCAGGGAGGCGCGGGTGTCGAGGTACAGGGAGAAGCGGCGGACGCGGCTCTTCTCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGCCGCTTCGTCAAGCGCGCCGCCGCCGCCGCCACCGCCGCCGTCGCCACGGCGTGCGTCGCGTAGCGCTGCATGGCGGAAGTTTGATCTGCCGGCCGCGCGCTCGCCATGAAATCACACAAGAACAAAACAACTCGTCGAAACTGCATTAGTTTTAGCTGGTTTCTTTTACGGTCACACATGCGTCTTCTTTTTCCATCAGTTCACCATTGATGGTTGCTAAGGATCCAAGGACTTTTAATAATAATTATTACTATAATAATAATGATAATACTAAAAAGTGAATTGTACTATTTGTTGAGAGGTATACAGTACCCCTGCGCTCAATTGCTGAAAGTTTTGAAAGTTTTTTTCCTCCCTTCAGATTCAGGGGGTTGGTTGACAGTAGTAGCCTGTAGCTGTGCTGTATGCATATATGTCCATTGGTTGTCCTGCACGGGTACAGTTCGAGGCCAGGAGATATACATGTAAATCAATCAATCAATATATACAACTAATTGATTCAGTGATGACCTCATATGTTTGTTGAGTTGAATAGAAGTTCTTTCACTTTCTCCCAACTTTAAATTTTGAAAGGGGGATAAATTATTGTATGTATTCAGGATTGCAAAATACAAACTTTATTGGTAATCAGTTTTTGCTGAGGTATTTGTTCGAATAAAGTTATGGAATT
CDS Sequence
- >LOC_Os06g15330.1
ATGAGCAGCACGGCGAAGGCGGCGGCCGCCGGGGCGGTGGGTGCCAAGTCGGCGCGGGCGTGCGACGGCTGCCTGCGCCGGCGGGCGAGGTGGTACTGCGCGGCGGACGACGCGTTCCTGTGCCAGGGGTGCGACACGTCGGTGCACTCCGCGAACCCGCTCGCGCGGCGCCACGAGCGGCTGCGGCTGCGGCCGTCGTCGCCGCCGCCGCTGGTGCCGCCGTCGGGGTCGGGGCGGCGCGACGAGGCCGTCCCCGCGGCGTGGTTCAAGCGCAAGGCGCGGACCCCGCGGTCGCACGCCGCCAAGAGCGCCGCCGCCTTCGGGCAGCTGCTGTCGAGGCGGCTCGTCGTCGTTCCCGAGGCGGCGGCTGGTAGTGGAGGGGACTCGCCGGAGGAGCGGAAGGACGAGGGGGAGATCGTGGAGGAGCAGGAGCAGCTGCTGTACCGCGTCCCCATCTTTGACCCGGCCCTCTCGGAGTTCTGCTCGCCGCCTCCCCTCGAGGACGCGGCGGCCGCCGTGTCCTGCTGCAATGAGGACGGCGCCGTCGAGAACCCGACGAAGCCGTCCATGACGACGACGACGGCTACAACGCCACCGCTCCAGTTCTTCCCCGACGGCCAAGCCAATTTCGGGCCGACCGACGCCGAGCTGAGGGAGTTCGCCGCCGACATGGAGGCCCTCCTCGGGCGTGGCCTGGACGACGGCAACGACGAGGACTCCTTCTGCATGGAGACGCTGGGGCTCATCGAGCCGGTGGACGACGACGCCGGGCGGGTCAAGGTGGAGGCCGACGGCGACGCCGGGATGACCCTAGCGTGGTGCCACGAGCTGGACACGGAGACATCGTCCGGCGAGATGCTGGACATCGACTTCGACTGCGGCTCACCTCAGGCGGCGACGACACCCGACGAGAAGGTCGGGAGCAGCGGGCCCGCCGCCGCCGACGACGACGCGCAGCTCCAGCAGAGCAACCTCGCCCTCAGCCTCAACTACGAGGCCATCATCGAGAGCTGGGGGACCTCGCCGTGGACCGACGGCGAGCGGCCGCACGTCAAGCTCGACGACTCCTGGCCCCGCGATTACTCGGGGGTGTGGATGGCGGCGGCAGGGGTGTTCGGGCACGGCGGCGAGGAGCAGGCGCTGACGCCGAGGCTGGGGATGGACGGCGGCAGGGAGGCGCGGGTGTCGAGGTACAGGGAGAAGCGGCGGACGCGGCTCTTCTCCAAGAAGATCCGGTACGAGGTGCGCAAGCTCAACGCCGAGAAGCGGCCGCGGATGAAGGGCCGCTTCGTCAAGCGCGCCGCCGCCGCCGCCACCGCCGCCGTCGCCACGGCGTGCGTCGCGTAG
Protein Sequence
- >LOC_Os06g15330.1
MSSTAKAAAAGAVGAKSARACDGCLRRRARWYCAADDAFLCQGCDTSVHSANPLARRHERLRLRPSSPPPLVPPSGSGRRDEAVPAAWFKRKARTPRSHAAKSAAAFGQLLSRRLVVVPEAAAGSGGDSPEERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDGAVENPTKPSMTTTTATTPPLQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDSFCMETLGLIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAATTPDEKVGSSGPAAADDDAQLQQSNLALSLNYEAIIESWGTSPWTDGERPHVKLDDSWPRDYSGVWMAAAGVFGHGGEEQALTPRLGMDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAAAAATAAVATACVA*