Information report for YPD1
Gene Details
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Functional Descriptions
- YPD1 was preferentially expressed in the leaf and encodes an LRR-Like1 (LRRL1) protein.
- These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence.
- YPD1 localized on the chloroplast membrane.
- The YPD1 mutants exhibited a yellow and dwarf phenotype from germination, and premature senescence starting at tillering.
- Moreover, the YPD1 mutants were sensitive to high light, which accelerated cell death and senescence.
- Trypan blue staining, TUNEL experiments, NBT staining, and DAB staining demonstrated that the YPD1 mutants showed cell death and accumulated reactive oxygen species.
Functional Keywords
Literature and News
Homologs
- Arabidopsis thaliana: AT3G49960, AT3G50990, AT3G49110
- Cicer arietinum: Ca_27049
- Citrullus lanatus: Cla97C09G183530
- Cucumis sativus: Csa_5G467900
- Glycine max: GLYMA_02G029800
Sequences
cDNA Sequence
- >LOC_Os06g13050.1
ATGGACACTCACCTCGTCGTCGTCCTGGCATTGCTCGCCGCCGCCGCCGCGGCGGAGGCCAAGATGTCGGCGGACTACTACAGCAAGACGTGCCCGCGCGCGGACCGGATCATCGCCGACGTGCTGGCGCAGAAGCAGATCTCCAACCCTACGACGGCGGCGGGCGTCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCGTGCTGGTCGCGTCCACCGCCGCGGCGCGCTCCGAGCGCGACGCCGACGTGAACCTGTCGCTCCCGGGTGACGCCTTCGACGCCCTGGCGCGCGCCAAGGCGGCGCTGGAGGTGGAGTGCCCGGGCGTCGTCTCCTGCGCCGACCTCCTCGCCGTCGCGGCGCGCGACCTCGTCACCATGACGGGGGGGCCCTACTACCCGCTCCGCCTCGGCCGCAAGGACGGGCTCTCCTCCTCGCCGTCGGCGCCCGACGCCGAGATCCCGCACGCCAACCTCACCGTCTCCCGCCTCGTCGCCGTGTTCGCCGCCAAGGGCTTCACCGTCCAGGACCTCGTCGCGCTCTCCGGCGCACACACCCTCGGCTTCTCCCATTGCAAGGAGTTCGCCGCCCGCATCTACGGCGGCGGCGGTGGCGGCGCCGACCCGACCATGAACCCGGCGCTCGCGAAGCGGCTGCAGGAGGCGTGCAGGGACTACCGGAGGGGCCCGACCATCGCGGCGTTCAACGACGTGATGACGCCGGGGAGGTTCGACAACATGTACTTCGTCAACCTCCGGCGAGGCCTCGGCCTCCTCGCCACCGACCAGGAGCTCTACGGCGACGCGCGGACGCGGCCGCACGTGGAGCGGTACGCCGCCAACGAGACGGCGTTCTTCGCCGACTTCGCGCGCGCCGCCCGGAGGCTCAGCCACCACGGCGTCAAGAACGGCGCCAACGGCGAGATTGGGGGCGGCGTGAACTTGCCTGATCTGTGGGTGATGTGGCTAGGCTTGGCAGCTAGAGGGACAACGCGATGGTCTGGTGACGATGTTGTGCAGAGGACAGTCATATGGAGGGTGGTTCAGAATTTGCTTCCCGGGAAGACAAAGGACCAGAGTTCTGGAGAATCTACCCCTTCTGGGATCATGTGGTCCTTTGCCGCTGGTTCCAATTTGTCAACATCTGCAAGCTTTAATGCTGAAAAGGAATCAAGGAAGAATTTAAATAAGTTCTATAAGGAAATCAGGACTCTGAAAAATGTTAACATGGCAGGTCGTCAATTTGGGGATGAGGGTCTGTTTTTTCTAGCAGAAAGCTTAGCCTATAACAAGAGTGCAGAAGAGGTAGACTTTTCTGGCAATGGGATAACAGCTGTGGGGATAGAAGCCTTTGATGGCATTCTTCAGATAAATACAGCCTTAAAATCTCTCAACTTATCTGGAAATGCCATTGGAGACGAAGGAGCTAAGTGTCTTTCAGATATATTGGTAGAGAATGTAGGTATCCAGAAGCTCCTATTGAACAGTACAAATATTGGAGACGAGGGGGCAAAAGCAATTTCGGATATGTTGAAAAAGAACAAGACGATACGTACTTTACAACTCAGCAACAACACAATAGAATACAGCGGTTTTGCAAGTATTGCAGAAGCACTCCTTGAGAATAATGTGCTACGGAGCTTATTTGTCAATGGCAACTATGGTGGTCCTCTTGGTGCATCCAGCCTAGCAAAAGGAATTCTAGGGAACAAAACTTTGAGGGAACTTCATTTGCATGGCAATGGTTTTGGGAATGAGGGAGTACGTGCATTGATGTCAGCGTTGTCTGCTCACAAAGGGAAGATCACTGTTTTGGATATTGGTAACAACAACATTACCTCTGAAGGTTCTCTTCATGTTGCTGAGTTCATCAAAAGGACAAAGTCTTTACTATGGCTCAGTCTATACATGAACGATATAAGTGATGAGGGAGCTGAAAAGGTTGCAGATGCTCTGAAACAGAATAAAACAATTTCTACTGTAGACTTGGGTGGTAATAACATTCACTCTAAAGGGGTAAGTGCAATAGCTGAAACTCTGAAGGATAATTCAGTGGTGACAACATTGGAGTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGATAGGTGTATCAGGTGCAGAATTTGTTGCTGATTGTTTGAAGTACAACACAACATTATCTACATTGGATTTGAGGGCAAATGGACTTGGAGATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGATCATGTATATGAGATGAGCGAAAAGGAAATAGACATTTTCTTTTAG
CDS Sequence
- >LOC_Os06g13050.1
ATGGACACTCACCTCGTCGTCGTCCTGGCATTGCTCGCCGCCGCCGCCGCGGCGGAGGCCAAGATGTCGGCGGACTACTACAGCAAGACGTGCCCGCGCGCGGACCGGATCATCGCCGACGTGCTGGCGCAGAAGCAGATCTCCAACCCTACGACGGCGGCGGGCGTCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCGTGCTGGTCGCGTCCACCGCCGCGGCGCGCTCCGAGCGCGACGCCGACGTGAACCTGTCGCTCCCGGGTGACGCCTTCGACGCCCTGGCGCGCGCCAAGGCGGCGCTGGAGGTGGAGTGCCCGGGCGTCGTCTCCTGCGCCGACCTCCTCGCCGTCGCGGCGCGCGACCTCGTCACCATGACGGGGGGGCCCTACTACCCGCTCCGCCTCGGCCGCAAGGACGGGCTCTCCTCCTCGCCGTCGGCGCCCGACGCCGAGATCCCGCACGCCAACCTCACCGTCTCCCGCCTCGTCGCCGTGTTCGCCGCCAAGGGCTTCACCGTCCAGGACCTCGTCGCGCTCTCCGGCGCACACACCCTCGGCTTCTCCCATTGCAAGGAGTTCGCCGCCCGCATCTACGGCGGCGGCGGTGGCGGCGCCGACCCGACCATGAACCCGGCGCTCGCGAAGCGGCTGCAGGAGGCGTGCAGGGACTACCGGAGGGGCCCGACCATCGCGGCGTTCAACGACGTGATGACGCCGGGGAGGTTCGACAACATGTACTTCGTCAACCTCCGGCGAGGCCTCGGCCTCCTCGCCACCGACCAGGAGCTCTACGGCGACGCGCGGACGCGGCCGCACGTGGAGCGGTACGCCGCCAACGAGACGGCGTTCTTCGCCGACTTCGCGCGCGCCGCCCGGAGGCTCAGCCACCACGGCGTCAAGAACGGCGCCAACGGCGAGATTGGGGGCGGCGTGAACTTGCCTGATCTGTGGGTGATGTGGCTAGGCTTGGCAGCTAGAGGGACAACGCGATGGTCTGGTGACGATGTTGTGCAGAGGACAGTCATATGGAGGGTGGTTCAGAATTTGCTTCCCGGGAAGACAAAGGACCAGAGTTCTGGAGAATCTACCCCTTCTGGGATCATGTGGTCCTTTGCCGCTGGTTCCAATTTGTCAACATCTGCAAGCTTTAATGCTGAAAAGGAATCAAGGAAGAATTTAAATAAGTTCTATAAGGAAATCAGGACTCTGAAAAATGTTAACATGGCAGGTCGTCAATTTGGGGATGAGGGTCTGTTTTTTCTAGCAGAAAGCTTAGCCTATAACAAGAGTGCAGAAGAGGTAGACTTTTCTGGCAATGGGATAACAGCTGTGGGGATAGAAGCCTTTGATGGCATTCTTCAGATAAATACAGCCTTAAAATCTCTCAACTTATCTGGAAATGCCATTGGAGACGAAGGAGCTAAGTGTCTTTCAGATATATTGGTAGAGAATGTAGGTATCCAGAAGCTCCTATTGAACAGTACAAATATTGGAGACGAGGGGGCAAAAGCAATTTCGGATATGTTGAAAAAGAACAAGACGATACGTACTTTACAACTCAGCAACAACACAATAGAATACAGCGGTTTTGCAAGTATTGCAGAAGCACTCCTTGAGAATAATGTGCTACGGAGCTTATTTGTCAATGGCAACTATGGTGGTCCTCTTGGTGCATCCAGCCTAGCAAAAGGAATTCTAGGGAACAAAACTTTGAGGGAACTTCATTTGCATGGCAATGGTTTTGGGAATGAGGGAGTACGTGCATTGATGTCAGCGTTGTCTGCTCACAAAGGGAAGATCACTGTTTTGGATATTGGTAACAACAACATTACCTCTGAAGGTTCTCTTCATGTTGCTGAGTTCATCAAAAGGACAAAGTCTTTACTATGGCTCAGTCTATACATGAACGATATAAGTGATGAGGGAGCTGAAAAGGTTGCAGATGCTCTGAAACAGAATAAAACAATTTCTACTGTAGACTTGGGTGGTAATAACATTCACTCTAAAGGGGTAAGTGCAATAGCTGAAACTCTGAAGGATAATTCAGTGGTGACAACATTGGAGTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGATAGGTGTATCAGGTGCAGAATTTGTTGCTGATTGTTTGAAGTACAACACAACATTATCTACATTGGATTTGAGGGCAAATGGACTTGGAGATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGATCATGTATATGAGATGAGCGAAAAGGAAATAGACATTTTCTTTTAG
Protein Sequence
- >LOC_Os06g13050.1
MDTHLVVVLALLAAAAAAEAKMSADYYSKTCPRADRIIADVLAQKQISNPTTAAGVLRLFFHDCFVGGCDASVLVASTAAARSERDADVNLSLPGDAFDALARAKAALEVECPGVVSCADLLAVAARDLVTMTGGPYYPLRLGRKDGLSSSPSAPDAEIPHANLTVSRLVAVFAAKGFTVQDLVALSGAHTLGFSHCKEFAARIYGGGGGGADPTMNPALAKRLQEACRDYRRGPTIAAFNDVMTPGRFDNMYFVNLRRGLGLLATDQELYGDARTRPHVERYAANETAFFADFARAARRLSHHGVKNGANGEIGGGVNLPDLWVMWLGLAARGTTRWSGDDVVQRTVIWRVVQNLLPGKTKDQSSGESTPSGIMWSFAAGSNLSTSASFNAEKESRKNLNKFYKEIRTLKNVNMAGRQFGDEGLFFLAESLAYNKSAEEVDFSGNGITAVGIEAFDGILQINTALKSLNLSGNAIGDEGAKCLSDILVENVGIQKLLLNSTNIGDEGAKAISDMLKKNKTIRTLQLSNNTIEYSGFASIAEALLENNVLRSLFVNGNYGGPLGASSLAKGILGNKTLRELHLHGNGFGNEGVRALMSALSAHKGKITVLDIGNNNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTISTVDLGGNNIHSKGVSAIAETLKDNSVVTTLELSYNPIGPEGVKALCDVLKFNGKIQTLKLGWCQIGVSGAEFVADCLKYNTTLSTLDLRANGLGDDGAICLARSFKIINESLTSLDLGFNEIRDDGAFALAQALKANEDLAVTSLNLANNFFTKFGQVALSEARDHVYEMSEKEIDIFF*