Gene Details:

Functional Descriptions:

  • YPD1 was preferentially expressed in the leaf and encodes an LRR-Like1 (LRRL1) protein.
  • These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence.
  • YPD1 localized on the chloroplast membrane.
  • The YPD1 mutants exhibited a yellow and dwarf phenotype from germination, and premature senescence starting at tillering.
  • Moreover, the YPD1 mutants were sensitive to high light, which accelerated cell death and senescence.
  • Trypan blue staining, TUNEL experiments, NBT staining, and DAB staining demonstrated that the YPD1 mutants showed cell death and accumulated reactive oxygen species.

Literature:

Gene Resources:

  • NCBI ID:
  • UniProt accessions:

Sequences:

cDNA Sequence
  • >LOC_Os06g13050.1
    ATGGACACTCACCTCGTCGTCGTCCTGGCATTGCTCGCCGCCGCCGCCGCGGCGGAGGCCAAGATGTCGGCGGACTACTACAGCAAGACGTGCCCGCGCGCGGACCGGATCATCGCCGACGTGCTGGCGCAGAAGCAGATCTCCAACCCTACGACGGCGGCGGGCGTCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCGTGCTGGTCGCGTCCACCGCCGCGGCGCGCTCCGAGCGCGACGCCGACGTGAACCTGTCGCTCCCGGGTGACGCCTTCGACGCCCTGGCGCGCGCCAAGGCGGCGCTGGAGGTGGAGTGCCCGGGCGTCGTCTCCTGCGCCGACCTCCTCGCCGTCGCGGCGCGCGACCTCGTCACCATGACGGGGGGGCCCTACTACCCGCTCCGCCTCGGCCGCAAGGACGGGCTCTCCTCCTCGCCGTCGGCGCCCGACGCCGAGATCCCGCACGCCAACCTCACCGTCTCCCGCCTCGTCGCCGTGTTCGCCGCCAAGGGCTTCACCGTCCAGGACCTCGTCGCGCTCTCCGGCGCACACACCCTCGGCTTCTCCCATTGCAAGGAGTTCGCCGCCCGCATCTACGGCGGCGGCGGTGGCGGCGCCGACCCGACCATGAACCCGGCGCTCGCGAAGCGGCTGCAGGAGGCGTGCAGGGACTACCGGAGGGGCCCGACCATCGCGGCGTTCAACGACGTGATGACGCCGGGGAGGTTCGACAACATGTACTTCGTCAACCTCCGGCGAGGCCTCGGCCTCCTCGCCACCGACCAGGAGCTCTACGGCGACGCGCGGACGCGGCCGCACGTGGAGCGGTACGCCGCCAACGAGACGGCGTTCTTCGCCGACTTCGCGCGCGCCGCCCGGAGGCTCAGCCACCACGGCGTCAAGAACGGCGCCAACGGCGAGATTGGGGGCGGCGTGAACTTGCCTGATCTGTGGGTGATGTGGCTAGGCTTGGCAGCTAGAGGGACAACGCGATGGTCTGGTGACGATGTTGTGCAGAGGACAGTCATATGGAGGGTGGTTCAGAATTTGCTTCCCGGGAAGACAAAGGACCAGAGTTCTGGAGAATCTACCCCTTCTGGGATCATGTGGTCCTTTGCCGCTGGTTCCAATTTGTCAACATCTGCAAGCTTTAATGCTGAAAAGGAATCAAGGAAGAATTTAAATAAGTTCTATAAGGAAATCAGGACTCTGAAAAATGTTAACATGGCAGGTCGTCAATTTGGGGATGAGGGTCTGTTTTTTCTAGCAGAAAGCTTAGCCTATAACAAGAGTGCAGAAGAGGTAGACTTTTCTGGCAATGGGATAACAGCTGTGGGGATAGAAGCCTTTGATGGCATTCTTCAGATAAATACAGCCTTAAAATCTCTCAACTTATCTGGAAATGCCATTGGAGACGAAGGAGCTAAGTGTCTTTCAGATATATTGGTAGAGAATGTAGGTATCCAGAAGCTCCTATTGAACAGTACAAATATTGGAGACGAGGGGGCAAAAGCAATTTCGGATATGTTGAAAAAGAACAAGACGATACGTACTTTACAACTCAGCAACAACACAATAGAATACAGCGGTTTTGCAAGTATTGCAGAAGCACTCCTTGAGAATAATGTGCTACGGAGCTTATTTGTCAATGGCAACTATGGTGGTCCTCTTGGTGCATCCAGCCTAGCAAAAGGAATTCTAGGGAACAAAACTTTGAGGGAACTTCATTTGCATGGCAATGGTTTTGGGAATGAGGGAGTACGTGCATTGATGTCAGCGTTGTCTGCTCACAAAGGGAAGATCACTGTTTTGGATATTGGTAACAACAACATTACCTCTGAAGGTTCTCTTCATGTTGCTGAGTTCATCAAAAGGACAAAGTCTTTACTATGGCTCAGTCTATACATGAACGATATAAGTGATGAGGGAGCTGAAAAGGTTGCAGATGCTCTGAAACAGAATAAAACAATTTCTACTGTAGACTTGGGTGGTAATAACATTCACTCTAAAGGGGTAAGTGCAATAGCTGAAACTCTGAAGGATAATTCAGTGGTGACAACATTGGAGTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGATAGGTGTATCAGGTGCAGAATTTGTTGCTGATTGTTTGAAGTACAACACAACATTATCTACATTGGATTTGAGGGCAAATGGACTTGGAGATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGATCATGTATATGAGATGAGCGAAAAGGAAATAGACATTTTCTTTTAG
CDS Sequence
  • >LOC_Os06g13050.1
    ATGGACACTCACCTCGTCGTCGTCCTGGCATTGCTCGCCGCCGCCGCCGCGGCGGAGGCCAAGATGTCGGCGGACTACTACAGCAAGACGTGCCCGCGCGCGGACCGGATCATCGCCGACGTGCTGGCGCAGAAGCAGATCTCCAACCCTACGACGGCGGCGGGCGTCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCGTGCTGGTCGCGTCCACCGCCGCGGCGCGCTCCGAGCGCGACGCCGACGTGAACCTGTCGCTCCCGGGTGACGCCTTCGACGCCCTGGCGCGCGCCAAGGCGGCGCTGGAGGTGGAGTGCCCGGGCGTCGTCTCCTGCGCCGACCTCCTCGCCGTCGCGGCGCGCGACCTCGTCACCATGACGGGGGGGCCCTACTACCCGCTCCGCCTCGGCCGCAAGGACGGGCTCTCCTCCTCGCCGTCGGCGCCCGACGCCGAGATCCCGCACGCCAACCTCACCGTCTCCCGCCTCGTCGCCGTGTTCGCCGCCAAGGGCTTCACCGTCCAGGACCTCGTCGCGCTCTCCGGCGCACACACCCTCGGCTTCTCCCATTGCAAGGAGTTCGCCGCCCGCATCTACGGCGGCGGCGGTGGCGGCGCCGACCCGACCATGAACCCGGCGCTCGCGAAGCGGCTGCAGGAGGCGTGCAGGGACTACCGGAGGGGCCCGACCATCGCGGCGTTCAACGACGTGATGACGCCGGGGAGGTTCGACAACATGTACTTCGTCAACCTCCGGCGAGGCCTCGGCCTCCTCGCCACCGACCAGGAGCTCTACGGCGACGCGCGGACGCGGCCGCACGTGGAGCGGTACGCCGCCAACGAGACGGCGTTCTTCGCCGACTTCGCGCGCGCCGCCCGGAGGCTCAGCCACCACGGCGTCAAGAACGGCGCCAACGGCGAGATTGGGGGCGGCGTGAACTTGCCTGATCTGTGGGTGATGTGGCTAGGCTTGGCAGCTAGAGGGACAACGCGATGGTCTGGTGACGATGTTGTGCAGAGGACAGTCATATGGAGGGTGGTTCAGAATTTGCTTCCCGGGAAGACAAAGGACCAGAGTTCTGGAGAATCTACCCCTTCTGGGATCATGTGGTCCTTTGCCGCTGGTTCCAATTTGTCAACATCTGCAAGCTTTAATGCTGAAAAGGAATCAAGGAAGAATTTAAATAAGTTCTATAAGGAAATCAGGACTCTGAAAAATGTTAACATGGCAGGTCGTCAATTTGGGGATGAGGGTCTGTTTTTTCTAGCAGAAAGCTTAGCCTATAACAAGAGTGCAGAAGAGGTAGACTTTTCTGGCAATGGGATAACAGCTGTGGGGATAGAAGCCTTTGATGGCATTCTTCAGATAAATACAGCCTTAAAATCTCTCAACTTATCTGGAAATGCCATTGGAGACGAAGGAGCTAAGTGTCTTTCAGATATATTGGTAGAGAATGTAGGTATCCAGAAGCTCCTATTGAACAGTACAAATATTGGAGACGAGGGGGCAAAAGCAATTTCGGATATGTTGAAAAAGAACAAGACGATACGTACTTTACAACTCAGCAACAACACAATAGAATACAGCGGTTTTGCAAGTATTGCAGAAGCACTCCTTGAGAATAATGTGCTACGGAGCTTATTTGTCAATGGCAACTATGGTGGTCCTCTTGGTGCATCCAGCCTAGCAAAAGGAATTCTAGGGAACAAAACTTTGAGGGAACTTCATTTGCATGGCAATGGTTTTGGGAATGAGGGAGTACGTGCATTGATGTCAGCGTTGTCTGCTCACAAAGGGAAGATCACTGTTTTGGATATTGGTAACAACAACATTACCTCTGAAGGTTCTCTTCATGTTGCTGAGTTCATCAAAAGGACAAAGTCTTTACTATGGCTCAGTCTATACATGAACGATATAAGTGATGAGGGAGCTGAAAAGGTTGCAGATGCTCTGAAACAGAATAAAACAATTTCTACTGTAGACTTGGGTGGTAATAACATTCACTCTAAAGGGGTAAGTGCAATAGCTGAAACTCTGAAGGATAATTCAGTGGTGACAACATTGGAGTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGATAGGTGTATCAGGTGCAGAATTTGTTGCTGATTGTTTGAAGTACAACACAACATTATCTACATTGGATTTGAGGGCAAATGGACTTGGAGATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGATCATGTATATGAGATGAGCGAAAAGGAAATAGACATTTTCTTTTAG
Protein Sequence
  • >LOC_Os06g13050.1
    MDTHLVVVLALLAAAAAAEAKMSADYYSKTCPRADRIIADVLAQKQISNPTTAAGVLRLFFHDCFVGGCDASVLVASTAAARSERDADVNLSLPGDAFDALARAKAALEVECPGVVSCADLLAVAARDLVTMTGGPYYPLRLGRKDGLSSSPSAPDAEIPHANLTVSRLVAVFAAKGFTVQDLVALSGAHTLGFSHCKEFAARIYGGGGGGADPTMNPALAKRLQEACRDYRRGPTIAAFNDVMTPGRFDNMYFVNLRRGLGLLATDQELYGDARTRPHVERYAANETAFFADFARAARRLSHHGVKNGANGEIGGGVNLPDLWVMWLGLAARGTTRWSGDDVVQRTVIWRVVQNLLPGKTKDQSSGESTPSGIMWSFAAGSNLSTSASFNAEKESRKNLNKFYKEIRTLKNVNMAGRQFGDEGLFFLAESLAYNKSAEEVDFSGNGITAVGIEAFDGILQINTALKSLNLSGNAIGDEGAKCLSDILVENVGIQKLLLNSTNIGDEGAKAISDMLKKNKTIRTLQLSNNTIEYSGFASIAEALLENNVLRSLFVNGNYGGPLGASSLAKGILGNKTLRELHLHGNGFGNEGVRALMSALSAHKGKITVLDIGNNNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTISTVDLGGNNIHSKGVSAIAETLKDNSVVTTLELSYNPIGPEGVKALCDVLKFNGKIQTLKLGWCQIGVSGAEFVADCLKYNTTLSTLDLRANGLGDDGAICLARSFKIINESLTSLDLGFNEIRDDGAFALAQALKANEDLAVTSLNLANNFFTKFGQVALSEARDHVYEMSEKEIDIFF*