Gene Details:
- MSU gene ID: LOC_Os06g13050
- RAPdb gene ID: Os06g0237502 ,Os06g0237600
- Gene Symbol: YPD1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- YPD1 was preferentially expressed in the leaf and encodes an LRR-Like1 (LRRL1) protein.
- These findings revealed that the novel rice LRRL1 protein YPD1 affects rice chloroplast development and leaf senescence.
- YPD1 localized on the chloroplast membrane.
- The YPD1 mutants exhibited a yellow and dwarf phenotype from germination, and premature senescence starting at tillering.
- Moreover, the YPD1 mutants were sensitive to high light, which accelerated cell death and senescence.
- Trypan blue staining, TUNEL experiments, NBT staining, and DAB staining demonstrated that the YPD1 mutants showed cell death and accumulated reactive oxygen species.
Function-related keywords:
- leaf , leaf-senescence , chloroplast , senescence , tillering , development , cell-death , dwarf , chloroplast-development , reactive-oxygen-species
Literature:
- The rice LRR-like1 protein YELLOW AND PREMATURE DWARF 1 is involved in leaf senescence induced by high light . DOI: 10.1093/jxb/eraa532 ; PMID: 33200773
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g13050.1
ATGGACACTCACCTCGTCGTCGTCCTGGCATTGCTCGCCGCCGCCGCCGCGGCGGAGGCCAAGATGTCGGCGGACTACTACAGCAAGACGTGCCCGCGCGCGGACCGGATCATCGCCGACGTGCTGGCGCAGAAGCAGATCTCCAACCCTACGACGGCGGCGGGCGTCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCGTGCTGGTCGCGTCCACCGCCGCGGCGCGCTCCGAGCGCGACGCCGACGTGAACCTGTCGCTCCCGGGTGACGCCTTCGACGCCCTGGCGCGCGCCAAGGCGGCGCTGGAGGTGGAGTGCCCGGGCGTCGTCTCCTGCGCCGACCTCCTCGCCGTCGCGGCGCGCGACCTCGTCACCATGACGGGGGGGCCCTACTACCCGCTCCGCCTCGGCCGCAAGGACGGGCTCTCCTCCTCGCCGTCGGCGCCCGACGCCGAGATCCCGCACGCCAACCTCACCGTCTCCCGCCTCGTCGCCGTGTTCGCCGCCAAGGGCTTCACCGTCCAGGACCTCGTCGCGCTCTCCGGCGCACACACCCTCGGCTTCTCCCATTGCAAGGAGTTCGCCGCCCGCATCTACGGCGGCGGCGGTGGCGGCGCCGACCCGACCATGAACCCGGCGCTCGCGAAGCGGCTGCAGGAGGCGTGCAGGGACTACCGGAGGGGCCCGACCATCGCGGCGTTCAACGACGTGATGACGCCGGGGAGGTTCGACAACATGTACTTCGTCAACCTCCGGCGAGGCCTCGGCCTCCTCGCCACCGACCAGGAGCTCTACGGCGACGCGCGGACGCGGCCGCACGTGGAGCGGTACGCCGCCAACGAGACGGCGTTCTTCGCCGACTTCGCGCGCGCCGCCCGGAGGCTCAGCCACCACGGCGTCAAGAACGGCGCCAACGGCGAGATTGGGGGCGGCGTGAACTTGCCTGATCTGTGGGTGATGTGGCTAGGCTTGGCAGCTAGAGGGACAACGCGATGGTCTGGTGACGATGTTGTGCAGAGGACAGTCATATGGAGGGTGGTTCAGAATTTGCTTCCCGGGAAGACAAAGGACCAGAGTTCTGGAGAATCTACCCCTTCTGGGATCATGTGGTCCTTTGCCGCTGGTTCCAATTTGTCAACATCTGCAAGCTTTAATGCTGAAAAGGAATCAAGGAAGAATTTAAATAAGTTCTATAAGGAAATCAGGACTCTGAAAAATGTTAACATGGCAGGTCGTCAATTTGGGGATGAGGGTCTGTTTTTTCTAGCAGAAAGCTTAGCCTATAACAAGAGTGCAGAAGAGGTAGACTTTTCTGGCAATGGGATAACAGCTGTGGGGATAGAAGCCTTTGATGGCATTCTTCAGATAAATACAGCCTTAAAATCTCTCAACTTATCTGGAAATGCCATTGGAGACGAAGGAGCTAAGTGTCTTTCAGATATATTGGTAGAGAATGTAGGTATCCAGAAGCTCCTATTGAACAGTACAAATATTGGAGACGAGGGGGCAAAAGCAATTTCGGATATGTTGAAAAAGAACAAGACGATACGTACTTTACAACTCAGCAACAACACAATAGAATACAGCGGTTTTGCAAGTATTGCAGAAGCACTCCTTGAGAATAATGTGCTACGGAGCTTATTTGTCAATGGCAACTATGGTGGTCCTCTTGGTGCATCCAGCCTAGCAAAAGGAATTCTAGGGAACAAAACTTTGAGGGAACTTCATTTGCATGGCAATGGTTTTGGGAATGAGGGAGTACGTGCATTGATGTCAGCGTTGTCTGCTCACAAAGGGAAGATCACTGTTTTGGATATTGGTAACAACAACATTACCTCTGAAGGTTCTCTTCATGTTGCTGAGTTCATCAAAAGGACAAAGTCTTTACTATGGCTCAGTCTATACATGAACGATATAAGTGATGAGGGAGCTGAAAAGGTTGCAGATGCTCTGAAACAGAATAAAACAATTTCTACTGTAGACTTGGGTGGTAATAACATTCACTCTAAAGGGGTAAGTGCAATAGCTGAAACTCTGAAGGATAATTCAGTGGTGACAACATTGGAGTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGATAGGTGTATCAGGTGCAGAATTTGTTGCTGATTGTTTGAAGTACAACACAACATTATCTACATTGGATTTGAGGGCAAATGGACTTGGAGATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGATCATGTATATGAGATGAGCGAAAAGGAAATAGACATTTTCTTTTAG
CDS Sequence
- >LOC_Os06g13050.1
ATGGACACTCACCTCGTCGTCGTCCTGGCATTGCTCGCCGCCGCCGCCGCGGCGGAGGCCAAGATGTCGGCGGACTACTACAGCAAGACGTGCCCGCGCGCGGACCGGATCATCGCCGACGTGCTGGCGCAGAAGCAGATCTCCAACCCTACGACGGCGGCGGGCGTCCTCCGCCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCGTGCTGGTCGCGTCCACCGCCGCGGCGCGCTCCGAGCGCGACGCCGACGTGAACCTGTCGCTCCCGGGTGACGCCTTCGACGCCCTGGCGCGCGCCAAGGCGGCGCTGGAGGTGGAGTGCCCGGGCGTCGTCTCCTGCGCCGACCTCCTCGCCGTCGCGGCGCGCGACCTCGTCACCATGACGGGGGGGCCCTACTACCCGCTCCGCCTCGGCCGCAAGGACGGGCTCTCCTCCTCGCCGTCGGCGCCCGACGCCGAGATCCCGCACGCCAACCTCACCGTCTCCCGCCTCGTCGCCGTGTTCGCCGCCAAGGGCTTCACCGTCCAGGACCTCGTCGCGCTCTCCGGCGCACACACCCTCGGCTTCTCCCATTGCAAGGAGTTCGCCGCCCGCATCTACGGCGGCGGCGGTGGCGGCGCCGACCCGACCATGAACCCGGCGCTCGCGAAGCGGCTGCAGGAGGCGTGCAGGGACTACCGGAGGGGCCCGACCATCGCGGCGTTCAACGACGTGATGACGCCGGGGAGGTTCGACAACATGTACTTCGTCAACCTCCGGCGAGGCCTCGGCCTCCTCGCCACCGACCAGGAGCTCTACGGCGACGCGCGGACGCGGCCGCACGTGGAGCGGTACGCCGCCAACGAGACGGCGTTCTTCGCCGACTTCGCGCGCGCCGCCCGGAGGCTCAGCCACCACGGCGTCAAGAACGGCGCCAACGGCGAGATTGGGGGCGGCGTGAACTTGCCTGATCTGTGGGTGATGTGGCTAGGCTTGGCAGCTAGAGGGACAACGCGATGGTCTGGTGACGATGTTGTGCAGAGGACAGTCATATGGAGGGTGGTTCAGAATTTGCTTCCCGGGAAGACAAAGGACCAGAGTTCTGGAGAATCTACCCCTTCTGGGATCATGTGGTCCTTTGCCGCTGGTTCCAATTTGTCAACATCTGCAAGCTTTAATGCTGAAAAGGAATCAAGGAAGAATTTAAATAAGTTCTATAAGGAAATCAGGACTCTGAAAAATGTTAACATGGCAGGTCGTCAATTTGGGGATGAGGGTCTGTTTTTTCTAGCAGAAAGCTTAGCCTATAACAAGAGTGCAGAAGAGGTAGACTTTTCTGGCAATGGGATAACAGCTGTGGGGATAGAAGCCTTTGATGGCATTCTTCAGATAAATACAGCCTTAAAATCTCTCAACTTATCTGGAAATGCCATTGGAGACGAAGGAGCTAAGTGTCTTTCAGATATATTGGTAGAGAATGTAGGTATCCAGAAGCTCCTATTGAACAGTACAAATATTGGAGACGAGGGGGCAAAAGCAATTTCGGATATGTTGAAAAAGAACAAGACGATACGTACTTTACAACTCAGCAACAACACAATAGAATACAGCGGTTTTGCAAGTATTGCAGAAGCACTCCTTGAGAATAATGTGCTACGGAGCTTATTTGTCAATGGCAACTATGGTGGTCCTCTTGGTGCATCCAGCCTAGCAAAAGGAATTCTAGGGAACAAAACTTTGAGGGAACTTCATTTGCATGGCAATGGTTTTGGGAATGAGGGAGTACGTGCATTGATGTCAGCGTTGTCTGCTCACAAAGGGAAGATCACTGTTTTGGATATTGGTAACAACAACATTACCTCTGAAGGTTCTCTTCATGTTGCTGAGTTCATCAAAAGGACAAAGTCTTTACTATGGCTCAGTCTATACATGAACGATATAAGTGATGAGGGAGCTGAAAAGGTTGCAGATGCTCTGAAACAGAATAAAACAATTTCTACTGTAGACTTGGGTGGTAATAACATTCACTCTAAAGGGGTAAGTGCAATAGCTGAAACTCTGAAGGATAATTCAGTGGTGACAACATTGGAGTTGAGCTATAATCCGATTGGGCCAGAGGGGGTAAAGGCTCTTTGTGATGTTCTCAAGTTCAATGGGAAAATCCAAACCCTTAAACTTGGTTGGTGCCAGATAGGTGTATCAGGTGCAGAATTTGTTGCTGATTGTTTGAAGTACAACACAACATTATCTACATTGGATTTGAGGGCAAATGGACTTGGAGATGATGGTGCTATCTGCTTGGCTCGAAGTTTCAAGATCATCAATGAATCTTTGACTTCACTTGACCTGGGCTTTAATGAGATTAGAGATGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGGTTGCTCTGTCTGAGGCACGGGATCATGTATATGAGATGAGCGAAAAGGAAATAGACATTTTCTTTTAG
Protein Sequence
- >LOC_Os06g13050.1
MDTHLVVVLALLAAAAAAEAKMSADYYSKTCPRADRIIADVLAQKQISNPTTAAGVLRLFFHDCFVGGCDASVLVASTAAARSERDADVNLSLPGDAFDALARAKAALEVECPGVVSCADLLAVAARDLVTMTGGPYYPLRLGRKDGLSSSPSAPDAEIPHANLTVSRLVAVFAAKGFTVQDLVALSGAHTLGFSHCKEFAARIYGGGGGGADPTMNPALAKRLQEACRDYRRGPTIAAFNDVMTPGRFDNMYFVNLRRGLGLLATDQELYGDARTRPHVERYAANETAFFADFARAARRLSHHGVKNGANGEIGGGVNLPDLWVMWLGLAARGTTRWSGDDVVQRTVIWRVVQNLLPGKTKDQSSGESTPSGIMWSFAAGSNLSTSASFNAEKESRKNLNKFYKEIRTLKNVNMAGRQFGDEGLFFLAESLAYNKSAEEVDFSGNGITAVGIEAFDGILQINTALKSLNLSGNAIGDEGAKCLSDILVENVGIQKLLLNSTNIGDEGAKAISDMLKKNKTIRTLQLSNNTIEYSGFASIAEALLENNVLRSLFVNGNYGGPLGASSLAKGILGNKTLRELHLHGNGFGNEGVRALMSALSAHKGKITVLDIGNNNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTISTVDLGGNNIHSKGVSAIAETLKDNSVVTTLELSYNPIGPEGVKALCDVLKFNGKIQTLKLGWCQIGVSGAEFVADCLKYNTTLSTLDLRANGLGDDGAICLARSFKIINESLTSLDLGFNEIRDDGAFALAQALKANEDLAVTSLNLANNFFTKFGQVALSEARDHVYEMSEKEIDIFF*