Information report for OsTCP19
Gene Details
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Functional Descriptions
- Overexpression of OsTCP19 in Arabidopsis caused upregulation of IAA3, ABI3 and ABI4 and downregulation of LOX2, and led to developmental abnormalities like fewer lateral root formation.
- OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.
- Thus, OsTCP19 appears to be an important node in cell signaling which crosslinks stress and developmental pathways.
- Interactions of OsTCP19 with OsABI4 and OsULT1 further suggest its function in modulation of abscisic acid pathways and chromatin structure.
- Using a panel of diverse rice germplasm collected from different ecogeographical regions, we performed a genome-wide association study on the tillering response to nitrogen-the trait that is most closely correlated with nitrogen-use efficiency in rice-and identified OsTCP19 as a modulator of this tillering response through its transcriptional response to nitrogen and its targeting to the tiller-promoting gene DWARF AND LOW-TILLERING (DLT)3,4.
- A 29-bp insertion and/or deletion in the OsTCP19 promoter confers a differential transcriptional response and variation in the tillering response to nitrogen among rice varieties.
- The allele of OsTCP19 associated with a high tillering response to nitrogen is prevalent in wild rice populations, but has largely been lost in modern cultivars: this loss correlates with increased local soil nitrogen content, which suggests that it might have contributed to geographical adaptation in rice.
Functional Keywords
- root , abiotic-stress , stress , lateral-root , abscisic-acid , biotic-stress , node , nitrogen , tillering , dwarf
Literature and News
Gene Resources
- UniProt: Q67WL3
- EMBL: AK064240, AP014962
- AlphaFoldDB: Q67WL3
- EnsemblPlants: Os06t0226700-01
- Gramene: Os06t0226700-01
- KEGG: osa:4340553
- Orthologous matrix: PYRTVIG
- InterPro: IPR005333, IPR017887
- PANTHER: PTHR31072, PTHR31072:SF184
- PROSITE: PS51369
- OrthoDB: Q67WL3
- SWISS-MODEL: Q67WL3
- eggNOG: ENOG502QU5R
Homologs
- Hordeum vulgare: MLOC_60577.3, MLOC_60577.2
- Panicum virgatum: Pavir.4NG098900.1.p
- Setaria italica: Seita.4G097900.1.p, Seita.1G319500.1.p
- Setaria viridis: Sevir.4G097000.1.p, Sevir.1G325700.1.p
- Zea mays: GRMZM2G142751_P01, GRMZM2G113888_P01
Sequences
cDNA Sequence
- >LOC_Os06g12230.1
AATCCCGACAAAGTACACACACCATCGTCTCCCCCTCCTGCCTCGATGCTAGCTCTCCCATTCCCATCTCTCCACTCTCCCTCCTATCATATGCTCCTCCCTTCTCCACTCTTCTTCTCAAATCCTCTCTCTTCCTCTTCGTCCTCCTCCTCTTGCAACCAAAAAACACCATAAAATAGTAATCCCAATCCACAAGCTCACCTCTCTCTTGCACACACACACACCTGACACAACACTTACACATCATACCAGAAGAAAAACCAATTCGATTTTGCCAAATTACCTAGCTATAGCATATAGGTAGGTAGCTAGGTAGCTTGGTTTTCCCTAATAGCTCTAGCTTGATCTCTTTCTAGCTCTACCGGCGGCGTGGCGGCGGCGGCGGCGGCCGCACCACTCTACATCATCACGTACACCTGACCAGCTTAGCGGGAAGCCCCACAAGAAGAGTTTGTAGGTCACCAATCAGATCATCAGTTCATCTTTGTGGTTGTGTGGGTGTGTGTGTATATATATACCATGGCGTGAGAGTAGCCATGGATGTCACCGGAGACGGCGGAGGAGGAGGGCAACGGCCCAATTTCCCCCTGCAGCTCCTCGGGAAGAAGGAGGAGCAGACGTGCTCGACGTCGCAGACTGCCGGGGCGGGCGGCGGCGGCGTCGTGGGCGCGAATGGGTCGGCGGCGGCGGCGCCGCCGAAGCGGACGTCGACGAAGGACCGGCACACGAAGGTGGACGGGCGGGGGCGGCGCATCCGGATGCCGGCGATCTGCGCCGCGCGGGTGTTCCAGCTGACGCGGGAGCTCGGGCACAAGACCGACGGCGAGACCATCGAGTGGCTGCTGCAGCAGGCGGAGCCGGCGGTGATCGCGGCGACCGGGACGGGCACCATCCCGGCCAACTTCACCTCCCTCAACATCTCCCTCCGCTCCTCCGGCTCGTCGCTCTCCATCCCTTCTCACCTCCGCCTTGCCGGCTTGGCTGGCCCTCGCTTCGGCGGCGGCGCGCGGGCGGCGGACGCGTGGGACCGCGTCGTCGGCCTCGGGTTCGGCGGTGCGGCCGACGCCCCGTCCTCCGCCACCTCCTCCTCCTCGTCGCCGCTTCTGCTGAGCTTCCACTCCGGTAGCGTCGGCCTTGACGTGTCGCCGCCGTCGGCGTCGACCTCCCCGGCCGCCGCCGACCTCTCCCGGAAGCGGCGGTGGGAGCAAGAAATGCAGCAGCAGCAGCAGTACCAGCAGCAGATGGCCGGGTACACGCAGAGCCAAATTCCTGCGGGCACGGTGTGGATGGTGCCGAGCAGCAACGCGCAGGCCGCCGGTGGCGGCGCTCCGCCGGGAGGCGGCGGCGAGTCGATTTGGACGTTCCCGCAGTCAGGGAGCGGCGGCGGCGGCGGCGCGGCGACAGTGTACCGTGGCGTGCCAAGCGGACTACATTTCATGAACTTCCCGGCGACACCAATGGCGCTGCTCCCCGGCGGGCAGCAGCTCGGCCTCGCCGGCGCCGGCGGGGGTGGCGAGGGGCACCCGGGGATCCTCGCCGCGCTCAATGCCTACCGCGCACAGGCCGCGCAGCCGGACGCCGGCGCGGCGGCGCAGAATGGAGCGCAAGGCTCAAGTCAGCATCGTCAGCATCAGCATCACGGCGGCGGCGGCGGCGGCGGCGACGAGCGGCATGAGAGCATGAGCGCCAGCGACTCGTAGGGCTTCCGTTCCGTCCGGTGTGTGCCCCGCATTTTCTCTGGTTTTGATCTGTTCTTCTTTAATTTTCTCCGTTTTTGTTTGAGTTGTTGTCTACTAATGTCTATGGCTTTCTTCCTCGACCCATCATATATTCATGCAAGGATCATACAGTTGCATTCCATGCCATCTGCATAAAAATATCTTATTGTGTGCTCTTAAGAATGGATCACCAATTTCACCATGATAAAGCTCTTGCAAGTTGCAAGTGGTA
CDS Sequence
- >LOC_Os06g12230.1
ATGGATGTCACCGGAGACGGCGGAGGAGGAGGGCAACGGCCCAATTTCCCCCTGCAGCTCCTCGGGAAGAAGGAGGAGCAGACGTGCTCGACGTCGCAGACTGCCGGGGCGGGCGGCGGCGGCGTCGTGGGCGCGAATGGGTCGGCGGCGGCGGCGCCGCCGAAGCGGACGTCGACGAAGGACCGGCACACGAAGGTGGACGGGCGGGGGCGGCGCATCCGGATGCCGGCGATCTGCGCCGCGCGGGTGTTCCAGCTGACGCGGGAGCTCGGGCACAAGACCGACGGCGAGACCATCGAGTGGCTGCTGCAGCAGGCGGAGCCGGCGGTGATCGCGGCGACCGGGACGGGCACCATCCCGGCCAACTTCACCTCCCTCAACATCTCCCTCCGCTCCTCCGGCTCGTCGCTCTCCATCCCTTCTCACCTCCGCCTTGCCGGCTTGGCTGGCCCTCGCTTCGGCGGCGGCGCGCGGGCGGCGGACGCGTGGGACCGCGTCGTCGGCCTCGGGTTCGGCGGTGCGGCCGACGCCCCGTCCTCCGCCACCTCCTCCTCCTCGTCGCCGCTTCTGCTGAGCTTCCACTCCGGTAGCGTCGGCCTTGACGTGTCGCCGCCGTCGGCGTCGACCTCCCCGGCCGCCGCCGACCTCTCCCGGAAGCGGCGGTGGGAGCAAGAAATGCAGCAGCAGCAGCAGTACCAGCAGCAGATGGCCGGGTACACGCAGAGCCAAATTCCTGCGGGCACGGTGTGGATGGTGCCGAGCAGCAACGCGCAGGCCGCCGGTGGCGGCGCTCCGCCGGGAGGCGGCGGCGAGTCGATTTGGACGTTCCCGCAGTCAGGGAGCGGCGGCGGCGGCGGCGCGGCGACAGTGTACCGTGGCGTGCCAAGCGGACTACATTTCATGAACTTCCCGGCGACACCAATGGCGCTGCTCCCCGGCGGGCAGCAGCTCGGCCTCGCCGGCGCCGGCGGGGGTGGCGAGGGGCACCCGGGGATCCTCGCCGCGCTCAATGCCTACCGCGCACAGGCCGCGCAGCCGGACGCCGGCGCGGCGGCGCAGAATGGAGCGCAAGGCTCAAGTCAGCATCGTCAGCATCAGCATCACGGCGGCGGCGGCGGCGGCGGCGACGAGCGGCATGAGAGCATGAGCGCCAGCGACTCGTAG
Protein Sequence
- >LOC_Os06g12230.1
MDVTGDGGGGGQRPNFPLQLLGKKEEQTCSTSQTAGAGGGGVVGANGSAAAAPPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSLSIPSHLRLAGLAGPRFGGGARAADAWDRVVGLGFGGAADAPSSATSSSSSPLLLSFHSGSVGLDVSPPSASTSPAAADLSRKRRWEQEMQQQQQYQQQMAGYTQSQIPAGTVWMVPSSNAQAAGGGAPPGGGGESIWTFPQSGSGGGGGAATVYRGVPSGLHFMNFPATPMALLPGGQQLGLAGAGGGGEGHPGILAALNAYRAQAAQPDAGAAAQNGAQGSSQHRQHQHHGGGGGGGDERHESMSASDS*