Information report for S5(ORF4)
Gene Details
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Functional Descriptions
Literature and News
- Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O. sativa L.) . DOI: 10.1007/BF00222200 ; PMID: 24173889
- A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice . DOI: 10.1073/pnas.0804761105 ; PMID: 18678896
- Molecular basis underlying the S5-dependent reproductive isolation and compatibility of indica/japonica rice hybrids . DOI: 10.1104/pp.111.189571 ; PMID: 22218926
- A genome-wide analysis of wide compatibility in rice and the precise location of the S5 locus in the molecular map . DOI: 10.1007/s001220050629
- Delimitation of the rice wide compatibility gene S5 ( n ) to a 40-kb DNA fragment . DOI: 10.1007/s00122-005-0033-0 ; PMID: 16177904
- Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives . DOI: 10.1111/j.1469-8137.2011.03691.x ; PMID: 21443693
- A killer-protector system regulates both hybrid sterility and segregation distortion in rice . DOI: 10.1126/science.1223702 ; PMID: 22984070
Gene Resources
- UniProt: Q0DDN3
- EMBL: AP003458, AP004687, AP008212
- AlphaFoldDB: Q0DDN3
- EnsemblPlants: Os06t0212900-01
- Gramene: Os06t0212900-01
- KEGG: dosa:Os06g0212900, osa:4340470
- Orthologous matrix: EGHVMNF
- InterPro: IPR013126, IPR043129
- PANTHER: PTHR19375
- SUPFAM: SSF53067
- Gene3D: 3.30.420.40, 3.90.640.10
- OrthoDB: Q0DDN3
- SWISS-MODEL: Q0DDN3
Sequences
cDNA Sequence
- >LOC_Os06g10990.1
ATAGTACCTGTGGGATCGAAAGGCACTGACGAACTCGATCAAGAAGGAGTAGTCCTATCATATAATTGCTGATTCAGTGATTCGATTCCGTCGAGACTCGAGAGGGAGGCGAAGCATGGGGCGTCGTCGTCTTCTGTTGAGCGATCTACTGCTGCTGCTGCTCATCGCCATCGCGGTGGCAGGGGCAGCGGCGGCGATCGCGATCCCAAGAGCGGCGCCGGCGTTCGGAGTTGAAACTGGGTGGCCGCCGGAGCACTGCTTGCGCTGCTTCGCTCCACCGGATGCCCCCTTCGTCCTGGGCGCCGCCGCGGCCATCCATCTCGGCAACACCAACTCCTGCATCGCCGGCTACGACGACGACGACGCTCCCCTGGGGGCCAAGCGTAGCTACTACCAGTTCTGCATCCCCTCCTGGGTAGCCCTCGCACACGACAATGGCACCGTCATCTCCGGCGAGGCCGCTATGAACCGCGCCGCCCTCAGCCCCTCCACAGCTGTCTCCGCCTTCATGCGCCTCCTACACAGAAGGGTGGAGGACGATGTGGTGAAGAGAGAGATAGAGCTTGTGCCGTACAAGTTTACCAAGATGCTGGGATGGGTCTCCGTCCAACTAGACACAGATGCTGAATTCTCTGTCGACCATCTCGCCGGCATCCTCATCTCCCACCTCAAGCACACGGCGGAGGCGCACCTGGGCCGCCACATCAACAATGCTGTCATCACCCTACCCAGTCGACTCAGCTACTCCGCCGATGGCAGGCAGGTCCTCAGCTCGGCGGCGAAGGAGTACAGCGGCTTCAGGGCCGTCAAGGTCGTCGACGAGCACATCGCGGCGGCCGCGGCGTATGGGCACCACACCAAGCAGGGTGACCGCAAGGCCATCCTTGTCTTCCATCTCGGCGGCCGCACCTCCCACGCAACCATCTTCAAGTTCGTCGACGGCACGGCTCGCCTCATCGCGACGCGAGCTCATCATTTCCTCGGAGGTGACGATTTCACGGCGAGGATCGTGGACCACATGGTGGAGCACATCAAGGAGCAGCATGGCAGGGACGTACGGCAGGAGGAGAAGGCAATGGTGAGGCTAAGGGTGGCGTGCGAGCACGCCAAGAAGGCACTGAGCGAGCAACAAGAGACCCTGGTGCAGATGGACTCGCTTCTGGACGACGGCGCGGTCTTCTCCGCGACGCTGACGCGGGCCAAGTTCGAGGAGCTCAACCACGACCTGTTGGACAGAGCCATGGCGCTGGTGAAGGAGGTGGTGGTGACGACGGGAGGAGTGGAGGTGGTGGACGAGGTTCTTGTCGTCGGCGGCAGCGCGAGGATTCCCAAGGTTCGTCAGCTCGTCAAGGACTACTTCAATGGCAACGGCAATGGCACGCACCCAAACAGTCGCGGTTGCAAGGGGCCGGTGGATGTGGAACCAGAGGATGCCGTGCTTCATGGCGCCGCGCTTCTTTCCCGTCCTCTACCTGTTGCAGAGGGAACAGCAGCAGCTCGGTCCATCGGTTCCGTCGGAGGCATCTGATCTCTCTCGTGTAGCTTATGCTTTGGCTACGACGATGAACCAAGGTGGGTGCGCTTCAGGTTGGAGCTTACAGTGAGTGTGGGTCATTCTTGCCTTCTGGAGTCGTTTTACTAGTTGTAACATGTAGCACTAACCACTAAATAATTGTTCATTTCCCTGTGAAATTCTGAATGAGACACCTCCTTTTGTCAAGTC
CDS Sequence
- >LOC_Os06g10990.1
ATGGGGCGTCGTCGTCTTCTGTTGAGCGATCTACTGCTGCTGCTGCTCATCGCCATCGCGGTGGCAGGGGCAGCGGCGGCGATCGCGATCCCAAGAGCGGCGCCGGCGTTCGGAGTTGAAACTGGGTGGCCGCCGGAGCACTGCTTGCGCTGCTTCGCTCCACCGGATGCCCCCTTCGTCCTGGGCGCCGCCGCGGCCATCCATCTCGGCAACACCAACTCCTGCATCGCCGGCTACGACGACGACGACGCTCCCCTGGGGGCCAAGCGTAGCTACTACCAGTTCTGCATCCCCTCCTGGGTAGCCCTCGCACACGACAATGGCACCGTCATCTCCGGCGAGGCCGCTATGAACCGCGCCGCCCTCAGCCCCTCCACAGCTGTCTCCGCCTTCATGCGCCTCCTACACAGAAGGGTGGAGGACGATGTGGTGAAGAGAGAGATAGAGCTTGTGCCGTACAAGTTTACCAAGATGCTGGGATGGGTCTCCGTCCAACTAGACACAGATGCTGAATTCTCTGTCGACCATCTCGCCGGCATCCTCATCTCCCACCTCAAGCACACGGCGGAGGCGCACCTGGGCCGCCACATCAACAATGCTGTCATCACCCTACCCAGTCGACTCAGCTACTCCGCCGATGGCAGGCAGGTCCTCAGCTCGGCGGCGAAGGAGTACAGCGGCTTCAGGGCCGTCAAGGTCGTCGACGAGCACATCGCGGCGGCCGCGGCGTATGGGCACCACACCAAGCAGGGTGACCGCAAGGCCATCCTTGTCTTCCATCTCGGCGGCCGCACCTCCCACGCAACCATCTTCAAGTTCGTCGACGGCACGGCTCGCCTCATCGCGACGCGAGCTCATCATTTCCTCGGAGGTGACGATTTCACGGCGAGGATCGTGGACCACATGGTGGAGCACATCAAGGAGCAGCATGGCAGGGACGTACGGCAGGAGGAGAAGGCAATGGTGAGGCTAAGGGTGGCGTGCGAGCACGCCAAGAAGGCACTGAGCGAGCAACAAGAGACCCTGGTGCAGATGGACTCGCTTCTGGACGACGGCGCGGTCTTCTCCGCGACGCTGACGCGGGCCAAGTTCGAGGAGCTCAACCACGACCTGTTGGACAGAGCCATGGCGCTGGTGAAGGAGGTGGTGGTGACGACGGGAGGAGTGGAGGTGGTGGACGAGGTTCTTGTCGTCGGCGGCAGCGCGAGGATTCCCAAGGTTCGTCAGCTCGTCAAGGACTACTTCAATGGCAACGGCAATGGCACGCACCCAAACAGTCGCGGTTGCAAGGGGCCGGTGGATGTGGAACCAGAGGATGCCGTGCTTCATGGCGCCGCGCTTCTTTCCCGTCCTCTACCTGTTGCAGAGGGAACAGCAGCAGCTCGGTCCATCGGTTCCGTCGGAGGCATCTGA
Protein Sequence
- >LOC_Os06g10990.1
MGRRRLLLSDLLLLLLIAIAVAGAAAAIAIPRAAPAFGVETGWPPEHCLRCFAPPDAPFVLGAAAAIHLGNTNSCIAGYDDDDAPLGAKRSYYQFCIPSWVALAHDNGTVISGEAAMNRAALSPSTAVSAFMRLLHRRVEDDVVKREIELVPYKFTKMLGWVSVQLDTDAEFSVDHLAGILISHLKHTAEAHLGRHINNAVITLPSRLSYSADGRQVLSSAAKEYSGFRAVKVVDEHIAAAAAYGHHTKQGDRKAILVFHLGGRTSHATIFKFVDGTARLIATRAHHFLGGDDFTARIVDHMVEHIKEQHGRDVRQEEKAMVRLRVACEHAKKALSEQQETLVQMDSLLDDGAVFSATLTRAKFEELNHDLLDRAMALVKEVVVTTGGVEVVDEVLVVGGSARIPKVRQLVKDYFNGNGNGTHPNSRGCKGPVDVEPEDAVLHGAALLSRPLPVAEGTAAARSIGSVGGI*