Gene Details:
- MSU gene ID: LOC_Os06g10650
- RAPdb gene ID: Os06g0208700
- Gene Symbol: ORF1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Taken together with gene function annotation and expression profiles, it indicates that ORF1 (LOC_Os06g10650), encoding a tyrosine phosphatase family protein might be the causal candidate gene for seed germination under salt stress in the qGR6.2 locus.
- As reported previously, PTP family proteins have been reported to regulate signal transduction and control plant growth and development [33], and the PHD finger has been identified as one of the major families of histone reader domains, being involved in recognition of methylated H3K4 [34], so we speculated ORF1 (LOC_Os06g10650) and ORF5 (LOC_Os06g10690) might play similar functions in rice.
Function-related keywords:
Literature:
- Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress . DOI: 10.1186/s12870-020-02820-7 ; PMID: 33422012
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os06g10650.1
ACGCACAACACCACAGCGCTCATACCCGCTGCGCACACAAATCCGCCTCCTCTTCCGCTCGAATTTACGATTCTGCCCCCCTCCGCTCCACCGCGCGAAGGCGAAGCCGGTAGCCATGAAGCTGGAGGTGATGCCGAAGCAGAGGGCCATGGAGGCCGAGCAGAGGGAGGAGGCCATGGAGATGAGCGGGCTCGAGCTGTGGAAGCACGAGAAGCCCGCGTCCATGGTGGTGTTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCTTGTGCCGGCGGCGGCGGCCGCGGCCGCGGCGGCGTGTGGTGAGGAGGCGACGCTGGTGCCACCGCTCAACTTCGCGATGGTCGACGACGGCATCTTCCGCTCCGGCTTCCCCGCGGCCGCCAACTTCCGGTTCCTCAAGTCGCTCAACCTCCGCTCCATCGTGTACCTGTGCCCGGAGCCGTACCCGGAGACGAACGCGGAGTTCCTCGCCAAGAACGGGATCAAGCTCCACCAGTTCGGAATCGAGGGGCGCAAGGAACCATTCGTCAACATCCCTGACGACAAAATTCGAGAGGCGCTCAAAGTTGTCCTAGACGTAAAAAACCAACCTCTGCTTATTCACTGCAAGAGAGGCAAGCACCGCACCGGCTGCGTCGTGGGGTGCTTGAGGAAGCTTCAGAAATGGTGCTTGTCTTCAGTGTTCGACGAGTACCAGCGCTTCGCCGCTGCGAAGGCGAGGAGCACCGATCAGAGATTCATGGAGCTGTTCGACATCTCAAGCTTGAAGCACCTGACAGCTTCACATTGTTAACCAAGAGCGTGCGATTCGCGCTGTCTCCTCCTCTTTAAGTCCTAGCAAATCTCCCAAACCTATGATCTTCTCCCTGCAGCTACTGAATTTGATTCAGCAGTGAATAATTTTGGAACCCGTAGAATGAACCCCGTAAAAAAAGAAAATGTTTGTAATTGAGTTGAGAGTTCTAGTTTTCTCCTGCTTAGCTCCCTGCAGATCCTATGAACCAGACAGTTGTGGGTAGGATTGCAAGAGGTTTTTTCCCCATTTTTTTTTCTGGTAACTCTTGCGAGGAATTCACCAATTGTTTTCGGGTACTGAAAGCTGTACTCGAGCAGCATTGCTCGGCGGGAATGAACTTTCTCTTGATGCAAAAAAAGCTTGACTAGCTCTTCTTGCATGGATATATACATGATCATGTGCATTAACCGCAATA
CDS Sequence
- >LOC_Os06g10650.1
ATGAAGCTGGAGGTGATGCCGAAGCAGAGGGCCATGGAGGCCGAGCAGAGGGAGGAGGCCATGGAGATGAGCGGGCTCGAGCTGTGGAAGCACGAGAAGCCCGCGTCCATGGTGGTGTTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCTTGTGCCGGCGGCGGCGGCCGCGGCCGCGGCGGCGTGTGGTGAGGAGGCGACGCTGGTGCCACCGCTCAACTTCGCGATGGTCGACGACGGCATCTTCCGCTCCGGCTTCCCCGCGGCCGCCAACTTCCGGTTCCTCAAGTCGCTCAACCTCCGCTCCATCGTGTACCTGTGCCCGGAGCCGTACCCGGAGACGAACGCGGAGTTCCTCGCCAAGAACGGGATCAAGCTCCACCAGTTCGGAATCGAGGGGCGCAAGGAACCATTCGTCAACATCCCTGACGACAAAATTCGAGAGGCGCTCAAAGTTGTCCTAGACGTAAAAAACCAACCTCTGCTTATTCACTGCAAGAGAGGCAAGCACCGCACCGGCTGCGTCGTGGGGTGCTTGAGGAAGCTTCAGAAATGGTGCTTGTCTTCAGTGTTCGACGAGTACCAGCGCTTCGCCGCTGCGAAGGCGAGGAGCACCGATCAGAGATTCATGGAGCTGTTCGACATCTCAAGCTTGAAGCACCTGACAGCTTCACATTGTTAA
Protein Sequence
- >LOC_Os06g10650.1
MKLEVMPKQRAMEAEQREEAMEMSGLELWKHEKPASMVVFLPPPPPPPPLVPAAAAAAAAACGEEATLVPPLNFAMVDDGIFRSGFPAAANFRFLKSLNLRSIVYLCPEPYPETNAEFLAKNGIKLHQFGIEGRKEPFVNIPDDKIREALKVVLDVKNQPLLIHCKRGKHRTGCVVGCLRKLQKWCLSSVFDEYQRFAAAKARSTDQRFMELFDISSLKHLTASHC*