Information report for RNRL1;V3
Gene Details
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Functional Descriptions
- The virescent3 (V3) and stripe1 (st1) mutants in rice (Oryza sativa) produce chlorotic leaves in a growth stage-dependent manner under field conditions.
- Moreover, wild-type plants exposed to a low concentration of an RNR inhibitor, hydroxyurea, produce chlorotic leaves without growth retardation, reminiscent of V3 and st1 mutants.
- RNRL1 and RNRS1 are highly expressed in the shoot base and in young leaves, and the expression of the genes that function in plastid transcription/translation and in photosynthesis is altered in v3 and st1 mutants, indicating that a threshold activity of RNR is required for chloroplast biogenesis in developing leaves.
Functional Keywords
- growth , photosynthesis , shoot , chloroplast
Literature and News
Gene Resources
- UniProt: Q0DE83
- EMBL: AB023482, AP002864, AP008212
- EnsemblPlants: Os06t0168600-01
- Gramene: Os06t0168600-01
- KEGG: dosa:Os06g0168600, osa:4340258
- Orthologous matrix: IELPQHM
- InterPro: IPR000788, IPR005144, IPR008926
- PANTHER: PTHR11573, PTHR11573:SF6
- SUPFAM: SSF48168, SSF51998
- PROSITE: PS00089, PS51161
- Gene3D: 3.20.70.20
- OrthoDB: Q0DE83
- SWISS-MODEL: Q0DE83
- Conserved Domain Database: cd01679
Sequences
cDNA Sequence
- >LOC_Os06g07210.1
GCGGGAAACAGCTCCGCGCCCGCGCGCCAAACTTGCTCCAAATCGAAGTATTATTTTCTCTCGCGATTTCTCCGATTTTTTTTTCTAGCGATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCCCCCTCCTCCGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATCCAATCGCCGCGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTCGCCGGGTGGGGGGCGAAGATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAAGATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGTGCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGACGATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGCCCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTATGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGGTATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAATTAAGCAGCTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAGGAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTTCCTGATCTATTCATGCAAAGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAATGAAGCTCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATATGAGAGAGAGGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGAAAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATACAATCTCAACAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAATATGCGGCACAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTTGGCATGCCATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATTTACTTTCATTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCATCTGACAGATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAACTCTCTTCTTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAAGATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGATCTAAAAGCAATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCTGTTGATCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGAGTGCTTGGCGTGTGGAAGTTAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACTGGCTGATCATTTGGTCTCAATAACTGAAAAGGGAGCCCTTCGTGTAGTTTGTATGAGCTGATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTACTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTATTGACGTGTGGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTGTATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGTGATATTTTCAATTTGTTACTGTAATGGAATTTATCAGGAGCTGTACATCAGTGTGTGCAACATGATTACTTTTTCCG
CDS Sequence
- >LOC_Os06g07210.1
ATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAAGATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGTGCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGACGATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGCCCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTATGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGGTATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAATTAAGCAGCTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAGGAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTTCCTGATCTATTCATGCAAAGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAATGAAGCTCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATATGAGAGAGAGGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGAAAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATACAATCTCAACAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAATATGCGGCACAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTTGGCATGCCATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATTTACTTTCATTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCATCTGACAGATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAACTCTCTTCTTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAAGATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGATCTAAAAGCAATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCTGTTGATCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGAGTGCTTGGCGTGTGGAAGTTAG
Protein Sequence
- >LOC_Os06g07210.1
MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTASHPDYASLAARIAVSNLHKNTKKSFSETIKDMYGHFNERSGLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLADCWGDEFEKLYTKYEREGKAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLACGS*