Information report for OsSWN1
Gene Details
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Functional Descriptions
- OsSWN1 triggers the induction of polysaccharide and lignin biosynthetic gene expressions, however resulting in no significant impact on the lignin content in the transgenic plants.
Functional Keywords
Literature and News
- Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors . DOI: 10.1093/pcp/pcr123 ; PMID: 21908441
- Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis . DOI: 10.1111/ppl.12684 ; PMID: 29266248
- Lodging variation of weedy rice in China and its epigenetic influencing mechanisms . DOI: 10.1093/jxb/erac480 ; PMID: 36478231
Gene Resources
- UniProt: Q9SNM6
- EMBL: AF488413, AP014962
- AlphaFoldDB: Q9SNM6
- EnsemblPlants: Os06t0131700-01
- Gramene: Os06t0131700-01
- KEGG: osa:4340011
- Orthologous matrix: NIGTEWD
- InterPro: IPR003441, IPR036093
- PANTHER: PTHR31744, PTHR31744:SF221
- SUPFAM: SSF101941
- PROSITE: PS51005
- Gene3D: 2.170.150.80
- OrthoDB: Q9SNM6
- SWISS-MODEL: Q9SNM6
- eggNOG: ENOG502QSBA
Sequences
cDNA Sequence
- >LOC_Os06g04090.1
TTGTACCCCATCCGAGATCAATATCCATCCATCCATCACCACCTAGCAGCTCTACACCTCTCTCTTATATTAGCTCTCTCTCTCTCTCTACCCCCATTCATGCTCATCTCCTTCTAGCTTCCAGCTTAATCCCTTCCTTGTCAATGTTAATGGACAAACTCTGAGCATTGCACTACCCATCATCTCCTAGCTAGACTCACCTTAGCTTGTCTCTCTGCTGCTCCAGTGTGTGATTCTTTCTCCCATTTCCTGTTTGGTTTGCACTGAGTGAACAAGCAATTAAGCTTGGTAGTAGTAGTAGTTGTTGTATTGATCGATCGATCGATCTAGAGACGACGATGAGCATATCGGTGAACGGGCAGTCGGTGGTGCCACCGGGGTTCCGGTTCCACCCAACGGAGGAGGAGCTCCTGACATACTACCTGAAGAAGAAGGTGGCCTCGGAGCGCATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGAGAGGTGCAGGATTGGGTCAGGGCCGCAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCAACGGCGGCCGGCTTCTGGAAGGCCACCGGCCGCGACAAGGCCATCTACTCCAGCTCCAACCGCATCGGCATGCGCAAAACCCTCGTCTTCTACAAGGGCCGTGCCCCCCACGGCCAGAAATCAGACTGGATCATGCACGAGTACCGCCTCGACGACCCCTCCTCCGCCTCCGCCTCCGTCTCCGTCAACCTCCCCTCCTACTACTCTTCCTCCTCATCGTCATCTTCCCCAATGCACGGTGTCGCCGGAGACCAAGGAGCTCAGGAGGAAGGCTGGGTGATCTGCAGGGTGTTCAAGAAGAAGAACCTCGTGCACCACGGCGGCGGCGCCGCCGCGGCGAGCCACCACGCGGCGGCCAAGCTCGCGGCGGCGGCCATGGAGGGCAGCCCGAGCAACTGCTCGACGGTGACCGTTAGCGACCACGTCAAGGCGCAGATGCTGCACTCGTCCGCCAGCGACGACGCCCTCGACCACATCCTCCAGTACATGGGCCGCTCCGGCTGCAAGCAGGAGACCAAGCCGGCGGCGATGTCGGCGTCGTCGGCGGCAGCGGCGGCGGCGCTGGAGCAGCACCTCAGTACGCCTCAGTACGGCAAGTTCATGAAGCTTCCGCCGCTCGAGCACGTCGCCGGCGGCGTGGGCCTCCTGGCGGCGGCCGGCGGCGGCGGCGAGTACTGCTCCGCCGCCGACGCGTCGGGGATCGCCGACTGGGACACGCTGGACCGGCTCGCGGCGTCGTACGAGCTCAACGGCGCCCTCTCCGACGTCGCCTCCGGCAAGAACATGGCCGGCTTCTTCGACGTCGTCGATCAGCCCGCCGGCGCCGCCGCCTTCTCCTCCGGCGACGGCGACCTGTGGAGCCTTGCGCGGTCGGTGTCATCGTCGCTACACGCAGACTTGACGACCATGAATAACGTATAATAATTGGAGACAAGAGGTGACGATGGAGATGATGCATCTAGACGTGGATGGCGTATGCGTGCACTAACTCTACTCTTAATCTGGTCGGTCTACGCATATTGCATGCATGCATGGACGACGGTATTGTACGTACGTGATCAATAATTAATTACTAGTTAGGGTTCCAGCGAGAGTACAAGACGACGACGACGACACAATAGCTAGCTGAGCTGGCCATGTGAGCAAGCTCTAGACACTAGGTCAAGATCTAACCGTCGATCGATCTGAGCCGTTGATCGATCGATCGACGATGATGGTGTTGATCGATCGAATTATAGTGCAGTGGTCGAGCGAGTTGTTGTGTCGATCTGAAACAAGAGAGAGGAAAAAAAGAATTAAAAGGACGTACGGCGTGGTAGGAGAGAGAGAGAGAGAGCATATATAAATATTATGTATCTATATATTGTTATATATTGTACCTATAGCTTATTATATATCAAAGACATTTTTCTAGTGCAGCGAGGTGTGATTTCTTTTCTGATGATCATATCATATATATCATCATCGATCACTGATCACCGTGTGAGTGTACTAATTATTGTGTGATCGATCGCTCGATGGATGGATTAATAAACTAGTTGTGTGCCTGTGCGCGTGTTTTTTCAGA
CDS Sequence
- >LOC_Os06g04090.1
ATGAGCATATCGGTGAACGGGCAGTCGGTGGTGCCACCGGGGTTCCGGTTCCACCCAACGGAGGAGGAGCTCCTGACATACTACCTGAAGAAGAAGGTGGCCTCGGAGCGCATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGAGAGGTGCAGGATTGGGTCAGGGCCGCAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCAACGGCGGCCGGCTTCTGGAAGGCCACCGGCCGCGACAAGGCCATCTACTCCAGCTCCAACCGCATCGGCATGCGCAAAACCCTCGTCTTCTACAAGGGCCGTGCCCCCCACGGCCAGAAATCAGACTGGATCATGCACGAGTACCGCCTCGACGACCCCTCCTCCGCCTCCGCCTCCGTCTCCGTCAACCTCCCCTCCTACTACTCTTCCTCCTCATCGTCATCTTCCCCAATGCACGGTGTCGCCGGAGACCAAGGAGCTCAGGAGGAAGGCTGGGTGATCTGCAGGGTGTTCAAGAAGAAGAACCTCGTGCACCACGGCGGCGGCGCCGCCGCGGCGAGCCACCACGCGGCGGCCAAGCTCGCGGCGGCGGCCATGGAGGGCAGCCCGAGCAACTGCTCGACGGTGACCGTTAGCGACCACGTCAAGGCGCAGATGCTGCACTCGTCCGCCAGCGACGACGCCCTCGACCACATCCTCCAGTACATGGGCCGCTCCGGCTGCAAGCAGGAGACCAAGCCGGCGGCGATGTCGGCGTCGTCGGCGGCAGCGGCGGCGGCGCTGGAGCAGCACCTCAGTACGCCTCAGTACGGCAAGTTCATGAAGCTTCCGCCGCTCGAGCACGTCGCCGGCGGCGTGGGCCTCCTGGCGGCGGCCGGCGGCGGCGGCGAGTACTGCTCCGCCGCCGACGCGTCGGGGATCGCCGACTGGGACACGCTGGACCGGCTCGCGGCGTCGTACGAGCTCAACGGCGCCCTCTCCGACGTCGCCTCCGGCAAGAACATGGCCGGCTTCTTCGACGTCGTCGATCAGCCCGCCGGCGCCGCCGCCTTCTCCTCCGGCGACGGCGACCTGTGGAGCCTTGCGCGGTCGGTGTCATCGTCGCTACACGCAGACTTGACGACCATGAATAACGTATAA
Protein Sequence
- >LOC_Os06g04090.1
MSISVNGQSVVPPGFRFHPTEEELLTYYLKKKVASERIDLDVIRDVDLNKLEPWDIQERCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSSSNRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDPSSASASVSVNLPSYYSSSSSSSSPMHGVAGDQGAQEEGWVICRVFKKKNLVHHGGGAAAASHHAAAKLAAAAMEGSPSNCSTVTVSDHVKAQMLHSSASDDALDHILQYMGRSGCKQETKPAAMSASSAAAAAALEQHLSTPQYGKFMKLPPLEHVAGGVGLLAAAGGGGEYCSAADASGIADWDTLDRLAASYELNGALSDVASGKNMAGFFDVVDQPAGAAAFSSGDGDLWSLARSVSSSLHADLTTMNNV*