Information report for OsATM3
Gene Details
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Functional Descriptions
- In the OsATM3 T-DNA insertion mutant, the fourth leaf fails to develop and the lateral roots are short.
- Promoter-β-glucuronidase staining of the transgenic line indicated that OsATM3 is highly expressed in lateral root primordia, root tip meristem zones, and shoot apical meristem regions.
- Massive cell death occurred in the OsATM3 root tip meristem zone.
- Quantitative RT-PCR revealed transcriptional reprogramming of the genes in the OsATM3 and RNAi lines involved in DNA repair and cell cycle arrest.
- Cytosolic iron-sulfur protein activities were significantly reduced in both OsATM3 and RNA interference (RNAi) transgenic lines.
- The expression profiles of many iron metabolism genes were altered in the OsATM3 and RNAi lines.
- Glutathione metabolism was impaired and reactive oxygen species (ROS), particularly superoxide, accumulated in OsATM3.
Functional Keywords
- leaf , root , shoot , cell-death , meristem , cell-cycle , R-protein , lateral-root , iron , shoot-apical-meristem , reactive-oxygen-species
Literature and News
Gene Resources
- UniProt: B9FRA8
- EMBL: AP000391, AP008212
- EnsemblPlants: Os06t0128300-01, Os06t0128300-03
- Gramene: Os06t0128300-01, Os06t0128300-03
- KEGG: dosa:Os06g0128300, osa:4339984
- Orthologous matrix: VFHIIPI
- InterPro: IPR003439, IPR003593, IPR011527
- PANTHER: PTHR24221, PTHR24221:SF402
- SUPFAM: SSF52540, SSF90123
- PROSITE: PS00211, PS50893, PS50929
- Gene3D: 1.20.1560.10, 3.40.50.300
- OrthoDB: B9FRA8
- SWISS-MODEL: B9FRA8
- Conserved Domain Database: cd03253, cd18582
Sequences
cDNA Sequence
- >LOC_Os06g03770.1
CACAAAAAAACAAAAAACAAAAAACGTAGCACCAGTAGCCGCCTTTTCCCCATCTCCACTGGCCGCCGCCGGCGACATCGCCGGCGCCGCCGAGCTCCACCGCTCCGATCCCACTCCGAACAGCCGAGCTGCGGTTTCCAAGGAACCGCGGGCGAGCCGAGCCCGACCCGTTATCAGCCCCGTTTTTTTAACGGGGCAGTGTCCAAGTCCAACTCCGCCTCTTCCACGCTTCGGCTTCCATCCAATCATCTGCATCGTCGTCGCCGGCGAGCGCCATGAGGCCGACCTCCCGCATACTGGCCGCGGGCCACCTCCTCCGCGGCTCACGCTCACGCTACGACCCCTCGCCGGTCGCCGCTGCCGCCCCCATATTCCGGCGGCCGCCGACCGTGCCGAGGCCTCTCCCGAGCCCTCTGCTCGGAGGCTTCGGGCCGAATTGTTGGGTTTATCCCGGCGACGGGAAGTATGCCCCCTTTGGTCGCCTCAGCTGCTTCATGTCGGACTCCACCTACCCGCCGCCTCCCCGCGATGTGAGAGGACATGCATTTTCCACATCTGCCAATGCTGTGGCAGTTGGGAAATCATCTGATGACAAAGTGAAGAAAGATATCTCCAAAAAGGATGTTGATGATCAGATAGCAGATACACAGATACTGAAAAACCTTGGGAAATACTTATTGTTGAATGATAGCCCGGATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGGTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTTGCAGCCCTTGCTGGTGCTGAAACTTCACTTGCATCATTCACAGAGGCTAATGCTACCCTATTGGCTCTCTTTGCAAGCCCAGCAGCTGTTCTGATTGGATATGGAATTGCACGATCGGGAGTATCAGCCTGTACAGAACTGCGAAATGCTGTCTTTTCTAAAGTGACATTGAGAGCCATCCGTTCAGTCTCCAGTACGGTATTTTCGCACTTGCATGAGCTTGATCTTCGTTATCATCTAAGCCGGCAAACTGGTGCCCTAAATCGCATAATTGATCGAGGTAGTCGTGCGATAAATTACATCCTTACAGTGATGGTGTTCAATGTTGTTCCCACAATATTGGAGATTGGTATGGTGTCAAGTATACTTGCATACAAATTTGGTTCCACCTTTGCTTGGATTACTTCAGTTTCTGTTGCTACTTATATTGCTTTCACCTTGGCTGTGACGCAGTGGCGGACCAAATTCAGGACAGCCATGAATAAAGCTGATAACGCTTCTAGCACAGTGGCAGTTGACTCCCTTCTGAACTATGAGACTGTCAAGTACTTCAACAATGAACAATTTGAAGTTGAGAAGTATGACAAATATTTAAAGAAGTATGAGGATGCTGCACTGAAAACCCAAAGTAGCCTTGCCTACCTGAACTTTGGACAAAATATCATATTTAGCTCGGCTTTATCCACGGCTATGGTTTTGAGTTCATACGGTGTAATGAGTGGTGCTCTGACTGTCGGTGATTTGGTTATGGTTAATGGTCTTCTATTCCAACTTTCTTTGCCTCTGAACTTCCTTGGAAGTGTCTATCGAGAATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGGAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAGGGAGGACGCATTGAATTTGAGAACGTGCATTTTGGGTACGTACCAGAAAGGAAGATTCTTAAGGGTGCCACGTTCACTGTACCTGCAGGAAAGAGTGTTGCAATCGTTGGAACTAGTGGCAGCGGAAAGTCAACCATACTTAGGCTTCTCTTCAGATTTTTTGACTCCTCTTCAGGATCTATTCGAATAGATGGGCAAGATATCCGAGAGGTGACACTGGATAGTCTCCGGAAGTGTATTGGTGTTGTACCGCAAGATACGGTACTTTTTAATGACACAATTAAGCATAATATACAATATGGGCGGTTATCAGCAACAGATGAGGAGGTTTATGACGTTGCCCGCCGGGCTGCTATTCATGATACAATTATGAACTTTCCTGACAAGTACAACACAGTTGTGGGAGAGCGAGGATTAAAGTTAAGCGGTGGGGAGAAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATTTTAAATTCTCTGAAGACTTTGTCCGTTGACCGTACCTCTATCTTTATTGCACATCGACTGACAACTGCAATGCAATGTGATGAGATTATTGTTTTGGAGAATGGGGAGGTAGTGGAACAAGGACCACATGATTTTCTGCTGTCAAAGGGTGGCCGATATGCTGAATTGTGGTCACAGCAGAATAACAGTGATGCCATCGATGCTGCCGCGGTTAGCTTAGAGGTTTCATAGACTATATACATAATTCCCTTTTGCAAGGGAAAATGCAAACCATATTTGAATGAAAGAAGGCTTCCCCATATCTGCATTGTAAATTGAATGGTTAGGTTTTTAGATATCGGGGAACAGAAATTTATAGCTTAGGAGCAAATAACTCCGTTTGAAAGAAAGCCAGGAGGCAAAATTTTCCTCTTTGAGGAAACACCCAACAGTTCGACATGTTTCCATGATGTAAGCATTTTTTTTACTAATCCAAGTAAATATTTTTTCCCACTAAATCCTATGACCGTGATCTGATCGA
CDS Sequence
- >LOC_Os06g03770.1
ATGAGGCCGACCTCCCGCATACTGGCCGCGGGCCACCTCCTCCGCGGCTCACGCTCACGCTACGACCCCTCGCCGGTCGCCGCTGCCGCCCCCATATTCCGGCGGCCGCCGACCGTGCCGAGGCCTCTCCCGAGCCCTCTGCTCGGAGGCTTCGGGCCGAATTGTTGGGTTTATCCCGGCGACGGGAAGTATGCCCCCTTTGGTCGCCTCAGCTGCTTCATGTCGGACTCCACCTACCCGCCGCCTCCCCGCGATGTGAGAGGACATGCATTTTCCACATCTGCCAATGCTGTGGCAGTTGGGAAATCATCTGATGACAAAGTGAAGAAAGATATCTCCAAAAAGGATGTTGATGATCAGATAGCAGATACACAGATACTGAAAAACCTTGGGAAATACTTATTGTTGAATGATAGCCCGGATTTCCGCTTCAGGCTTATATTGTCATTGGGCCTCTTAGTTGGGGCAAAGGTTATAAATGTTCAAGTGCCTTTCTTGTTTAAGCTTGCTGTCGATTGGCTTGCAGCCCTTGCTGGTGCTGAAACTTCACTTGCATCATTCACAGAGGCTAATGCTACCCTATTGGCTCTCTTTGCAAGCCCAGCAGCTGTTCTGATTGGATATGGAATTGCACGATCGGGAGTATCAGCCTGTACAGAACTGCGAAATGCTGTCTTTTCTAAAGTGACATTGAGAGCCATCCGTTCAGTCTCCAGTACGGTATTTTCGCACTTGCATGAGCTTGATCTTCGTTATCATCTAAGCCGGCAAACTGGTGCCCTAAATCGCATAATTGATCGAGGTAGTCGTGCGATAAATTACATCCTTACAGTGATGGTGTTCAATGTTGTTCCCACAATATTGGAGATTGGTATGGTGTCAAGTATACTTGCATACAAATTTGGTTCCACCTTTGCTTGGATTACTTCAGTTTCTGTTGCTACTTATATTGCTTTCACCTTGGCTGTGACGCAGTGGCGGACCAAATTCAGGACAGCCATGAATAAAGCTGATAACGCTTCTAGCACAGTGGCAGTTGACTCCCTTCTGAACTATGAGACTGTCAAGTACTTCAACAATGAACAATTTGAAGTTGAGAAGTATGACAAATATTTAAAGAAGTATGAGGATGCTGCACTGAAAACCCAAAGTAGCCTTGCCTACCTGAACTTTGGACAAAATATCATATTTAGCTCGGCTTTATCCACGGCTATGGTTTTGAGTTCATACGGTGTAATGAGTGGTGCTCTGACTGTCGGTGATTTGGTTATGGTTAATGGTCTTCTATTCCAACTTTCTTTGCCTCTGAACTTCCTTGGAAGTGTCTATCGAGAATCTAGGCAAAGCCTGATTGACATGAAGTCTATGTTTCAATTGCTTGAGGAAAAACCTGGAATAAAGGATGAACCACATGCACAGCCTTTGCAGTTCAAGGGAGGACGCATTGAATTTGAGAACGTGCATTTTGGGTACGTACCAGAAAGGAAGATTCTTAAGGGTGCCACGTTCACTGTACCTGCAGGAAAGAGTGTTGCAATCGTTGGAACTAGTGGCAGCGGAAAGTCAACCATACTTAGGCTTCTCTTCAGATTTTTTGACTCCTCTTCAGGATCTATTCGAATAGATGGGCAAGATATCCGAGAGGTGACACTGGATAGTCTCCGGAAGTGTATTGGTGTTGTACCGCAAGATACGGTACTTTTTAATGACACAATTAAGCATAATATACAATATGGGCGGTTATCAGCAACAGATGAGGAGGTTTATGACGTTGCCCGCCGGGCTGCTATTCATGATACAATTATGAACTTTCCTGACAAGTACAACACAGTTGTGGGAGAGCGAGGATTAAAGTTAAGCGGTGGGGAGAAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATTTTAAATTCTCTGAAGACTTTGTCCGTTGACCGTACCTCTATCTTTATTGCACATCGACTGACAACTGCAATGCAATGTGATGAGATTATTGTTTTGGAGAATGGGGAGGTAGTGGAACAAGGACCACATGATTTTCTGCTGTCAAAGGGTGGCCGATATGCTGAATTGTGGTCACAGCAGAATAACAGTGATGCCATCGATGCTGCCGCGGTTAGCTTAGAGGTTTCATAG
Protein Sequence
- >LOC_Os06g03770.1
MRPTSRILAAGHLLRGSRSRYDPSPVAAAAPIFRRPPTVPRPLPSPLLGGFGPNCWVYPGDGKYAPFGRLSCFMSDSTYPPPPRDVRGHAFSTSANAVAVGKSSDDKVKKDISKKDVDDQIADTQILKNLGKYLLLNDSPDFRFRLILSLGLLVGAKVINVQVPFLFKLAVDWLAALAGAETSLASFTEANATLLALFASPAAVLIGYGIARSGVSACTELRNAVFSKVTLRAIRSVSSTVFSHLHELDLRYHLSRQTGALNRIIDRGSRAINYILTVMVFNVVPTILEIGMVSSILAYKFGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYETVKYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNIIFSSALSTAMVLSSYGVMSGALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLEEKPGIKDEPHAQPLQFKGGRIEFENVHFGYVPERKILKGATFTVPAGKSVAIVGTSGSGKSTILRLLFRFFDSSSGSIRIDGQDIREVTLDSLRKCIGVVPQDTVLFNDTIKHNIQYGRLSATDEEVYDVARRAAIHDTIMNFPDKYNTVVGERGLKLSGGEKQRVSIARVFLKEPSILLCDEATSALDSTTEASILNSLKTLSVDRTSIFIAHRLTTAMQCDEIIVLENGEVVEQGPHDFLLSKGGRYAELWSQQNNSDAIDAAAVSLEVS*